FFCP PHASE1:Hg19::chr3:128444994..128445044,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7879 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9788 | |||
|TSSclassifier=strong | |||
|UniProt=C9J8S3 | |||
|association_with_transcript=0bp_to_ENST00000482525_5end | |||
|cluster_id=chr3:128444994..128445044,+ | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_1_at_RAB7A_5end | |||
|id=chr3:128444994..128445044,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.16e-26!76;CL:0000557!8.34e-24!71;CL:0000839!3.30e-22!70;CL:0002009!1.05e-21!65;CL:0002194!1.15e-21!63;CL:0000576!1.15e-21!63;CL:0000040!1.15e-21!63;CL:0000559!1.15e-21!63;CL:0002057!4.08e-21!42;CL:0000860!4.89e-18!45;CL:0000763!3.55e-14!112;CL:0000049!3.55e-14!112;CL:0000063!1.36e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.96e-19;33!CL:0002057;6.96e-19;33!CL:0000473;1.00e-18;39!CL:0000234;1.00e-18;39!CL:0000576;3.00e-14;48!CL:0000766;4.24e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.09e-29,72;CL:0000557,1.40e-26,67;CL:0000839,7.20e-25,66;CL:0000473,1.54e-24,48;CL:0000234,1.54e-24,48;CL:0002194,1.68e-24,59;CL:0000576,1.68e-24,59;CL:0000040,1.68e-24,59;CL:0000559,1.68e-24,59;CL:0002009,1.77e-24,61;CL:0000860,4.08e-21,42;CL:0002057,4.08e-21,42;CL:0000763,1.56e-15,108;CL:0000049,1.56e-15,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.27e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.86e-22!80;UBERON:0001474!1.17e-20!86;UBERON:0002405!3.60e-19!115;UBERON:0004765!1.90e-18!101;UBERON:0001434!1.90e-18!101;UBERON:0002193!1.26e-17!112;UBERON:0002390!3.80e-16!102;UBERON:0003061!3.80e-16!102;UBERON:0000467!4.90e-12!625;UBERON:0000480!1.11e-11!626;UBERON:0000062!3.31e-11!511;UBERON:0002204!1.21e-10!167;UBERON:0000468!1.27e-10!659;UBERON:0003081!3.15e-10!216;UBERON:0000923!3.38e-08!604;UBERON:0005291!3.38e-08!604;UBERON:0006598!3.38e-08!604;UBERON:0002532!3.38e-08!604;UBERON:0002050!5.16e-08!605;UBERON:0005423!5.16e-08!605;UBERON:0000922!2.83e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.55e-24,76;UBERON:0001474,8.23e-23,82;UBERON:0002405,3.55e-22,93;UBERON:0004765,1.08e-20,90;UBERON:0002193,3.27e-19,108;UBERON:0001434,3.76e-19,100;UBERON:0002390,9.76e-18,98;UBERON:0003061,9.76e-18,98;UBERON:0002204,5.60e-11,167;UBERON:0003081,8.92e-11,203;UBERON:0000926,8.86e-10,315;UBERON:0004120,8.86e-10,315;UBERON:0006603,8.86e-10,315;UBERON:0002050,9.29e-09,564;UBERON:0000923,1.52e-08,560;UBERON:0010316,1.52e-08,560;UBERON:0005291,1.52e-08,560;UBERON:0006598,1.52e-08,560;UBERON:0010317,1.52e-08,560;UBERON:0002532,1.52e-08,560;UBERON:0005423,4.37e-08,581;UBERON:0000922,2.19e-07,592 | |||
|phase1_expression=306.128069070888,330.99940993546,299.528108703939,202.148062673323,220.351819552653,178.829397440576,154.512925682669,196.464880635744,208.687316931671,209.365313899286,184.219508344721,186.985814543427,201.25420438831,160.1536607303,122.948426395057,149.928507658746,171.767940486833,138.758917173601,177.119605960954,162.15043348713,141.372479032267,136.979713285924,125.943834337665,115.248265911368,119.265507615063,174.298978511077,176.926770264633,189.929115309908,218.317173651142,165.046641181801,183.147473882918,139.752026120797,159.036725114916,141.985539904046,102.566573568319,109.754647480289,117.440175733939,222.152158821283,300.215037862802,237.843914304574,296.24017241942,352.39630862865,364.469428202374,318.131346449688,426.244064480977,341.800942213633,439.755737825555,576.046211118578,553.44528478955,485.912450632112,483.119092513884,502.761220743132,478.507004862427,670.013101560011,656.818459982558,443.122467283291,629.867394333508,442.255817387927,561.970026392977,631.588325285752,583.075458728726,346.343865196052,385.164322867371,366.553285458117,613.212121222198,761.43097153551,822.125368674159,502.497330513487,514.182157562319,503.226553181755,486.741200117229,663.268022413604,600.012686587917,291.109784537856,244.4949449598,252.219350546576,254.199692284518,240.733559224935,343.792029945054,169.01255703856,213.238677957425,214.81304482721,100.317859342954,84.1053461343682,82.7243606093106,89.6133467389665,82.8819693164546,84.488608673309,95.851506553805,85.8648379081828,123.51921429675,128.017707282865,136.471542440707,129.527902007445,154.700363382904,131.428658302763,115.075215516592,131.65860552097,124.594508393703,133.582009817152,106.25065892255,101.791278232968,74.0341567950063,133.358316891553,104.879703061042,119.406769180572,106.696722323416,112.464178719143,103.397181310103,111.160023512085,95.3407561361177,148.089376810612,130.788748708937,130.55992410778,123.351918089873,136.87768597866,120.331234991003,120.956860809886,138.401771534668,98.4367130261459,95.0581842630371,112.153341244908,106.15545894983,109.044592703564,96.1966594453063,110.574976704556,95.2508476428414,105.23871996331,139.068901807424,106.880410065506,204.797767703728,112.677744430211,189.364454090268,149.274369934826,142.881304531229,202.350586988271,664.063765787668,198.547027083475,141.51862129461,124.833650771424,131.400839396917,148.464782076657,237.156232678445,219.504390128382,563.089727990876,586.294825486633,543.532142601121,115.667952788091,133.84680912255,132.238870473325,186.637900517336,142.798942787617,160.378911742709,205.206782918415,187.096748549618,204.68782320341,163.225068865249,218.878995016422,275.007321056827,311.624890483908,201.817487871683,186.266665901036,210.381493606522,219.494858966484,174.180518794578,192.262314995624,203.199082226684,226.912133173894,111.921145350095,129.100129701266,131.905255629893,332.086651938879,562.281383015072,207.580768819846,148.097641605205,221.223503878021,266.14245343457,160.341670998587,206.062330057245,144.094143236573,152.651063893478,220.274120736524,296.584116735977,151.414795406329,178.336936296783,264.118711240405,127.33487931008,167.539823761165,216.951253397073,213.926933079168,254.511102979717,126.94669303391,129.498355494505,153.231830112153,171.48950385411,146.172837601004,243.538866231279,269.676648603026,228.721909582665,688.081989625148,229.23918723938,119.013632565525,160.902416555346,391.768659294635,195.784018912854,206.26628657274,241.132084545088,194.309329753116,156.427762320688,158.886697281014,207.693263136371,116.735436376832,213.009577935853,165.405226709294,169.366339261747,174.852280201952,233.26419035591,164.839254581407,202.693876810343,208.685059353086,140.228789044063,218.027540564614,197.198968857097,268.825846750146,241.380316722889,284.796963221281,164.542529568824,119.54185102598,136.644076814554,145.332799131549,186.717429647965,102.193660541232,79.7892614882061,162.7399573628,92.550397306162,192.248322205239,158.091606485639,137.354194846259,138.5766152442,139.545386302536,129.374830015098,135.303134781384,141.413288990214,139.01107871313,144.811441262505,131.198780518719,285.666160939739,239.813433203892,174.918954815845,167.589930979518,147.035840393324,132.68167425148,145.925106950307,98.4462711694671,180.547027781291,202.621583962559,306.752047717108,120.269875985653,231.015578601928,211.842362522716,244.682037288054,172.62917435641,122.681640721482,214.819040418817,172.943006609365,271.55328823858,210.658408222358,214.035921263923,97.9853453469501,92.7165055062462,324.51401402319,382.596973502654,336.946844908547,182.780976274215,255.668799118664,251.509022507994,202.402261308437,214.487846623304,166.004700078536,2660.87414787599,345.854248803952,286.112799446265,283.483948371163,275.082262436082,405.688046632668,331.183964959027,273.116651999409,176.204619403386,311.56730289107,299.141685612542,571.367038828526,410.960424125747,252.856839923302,261.67100380915,281.812340351956,135.9094494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143.935253044152 | |||
|short_description=p1@RAB7A | |||
}} |
Latest revision as of 07:21, 20 September 2015
Short description: | p1@RAB7A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAB7A_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 0bp_to_ENST00000482525_5end |
EntrezGene: | RAB7A |
HGNC: | 9788 |
UniProt: | C9J8S3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.09e-29 | 72 |
granulocyte monocyte progenitor cell | 1.40e-26 | 67 |
myeloid lineage restricted progenitor cell | 7.20e-25 | 66 |
defensive cell | 1.54e-24 | 48 |
phagocyte | 1.54e-24 | 48 |
monopoietic cell | 1.68e-24 | 59 |
monocyte | 1.68e-24 | 59 |
monoblast | 1.68e-24 | 59 |
promonocyte | 1.68e-24 | 59 |
macrophage dendritic cell progenitor | 1.77e-24 | 61 |
classical monocyte | 4.08e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.08e-21 | 42 |
myeloid cell | 1.56e-15 | 108 |
common myeloid progenitor | 1.56e-15 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.55e-24 | 76 |
bone element | 8.23e-23 | 82 |
immune system | 3.55e-22 | 93 |
skeletal element | 1.08e-20 | 90 |
hemolymphoid system | 3.27e-19 | 108 |
skeletal system | 3.76e-19 | 100 |
hematopoietic system | 9.76e-18 | 98 |
blood island | 9.76e-18 | 98 |
musculoskeletal system | 5.60e-11 | 167 |
lateral plate mesoderm | 8.92e-11 | 203 |
mesoderm | 8.86e-10 | 315 |
mesoderm-derived structure | 8.86e-10 | 315 |
presumptive mesoderm | 8.86e-10 | 315 |
embryonic structure | 9.29e-09 | 564 |
germ layer | 1.52e-08 | 560 |
germ layer / neural crest | 1.52e-08 | 560 |
embryonic tissue | 1.52e-08 | 560 |
presumptive structure | 1.52e-08 | 560 |
germ layer / neural crest derived structure | 1.52e-08 | 560 |
epiblast (generic) | 1.52e-08 | 560 |
developing anatomical structure | 4.37e-08 | 581 |
embryo | 2.19e-07 | 592 |