FFCP PHASE1:Hg19::chr18:67873078..67873110,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr18:67873078..67873110,- to FFCP PHASE1:Hg19::chr18:67873078..67873110,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25914 | |EntrezGene=25914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18654 | |HGNC=18654 | ||
|TSSclassifier=strong | |||
|UniProt=Q86VV8,C9JTR3 | |UniProt=Q86VV8,C9JTR3 | ||
|association_with_transcript=-116bp_to_ENST00000255674,ENST00000437017,ENST00000454359,NM_173630,uc002lkp.2,uc002lkq.1,uc010xfb.1_5end | |||
|cluster_id=chr18:67873078..67873110,- | |||
|coexpression_cluster_id=C22 | |||
|description=CAGE_peak_5_at_RTTN_5end | |||
|id=chr18:67873078..67873110,- | |||
|ontology_enrichment_celltype=CL:0000738!4.03e-11!140;CL:0000791!3.78e-09!18;CL:0000789!3.78e-09!18;CL:0002420!3.78e-09!18;CL:0002419!3.78e-09!18;CL:0000790!3.78e-09!18;CL:0000542!1.01e-08!53;CL:0000051!1.01e-08!53;CL:0000838!1.10e-08!52;CL:0000037!1.31e-07!172;CL:0000566!1.31e-07!172;CL:0002031!1.48e-07!124;CL:0000084!6.86e-07!25;CL:0000827!6.86e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.06e-19;18!CL:0000789;5.06e-19;18!CL:0002419;5.06e-19;18!CL:0000084;2.14e-15;25!CL:0000624;1.13e-13;6!CL:0000542;2.27e-12;53!CL:0000623;1.35e-10;3!CL:0000226;1.60e-09;3!CL:0000842;1.60e-09;3!CL:0000625;1.70e-09;11!CL:0000236;6.69e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,4.08e-21,52;CL:0000738,5.64e-21,136;CL:0000542,1.31e-20,53;CL:0000051,1.31e-20,53;CL:0000791,3.69e-19,18;CL:0000789,3.69e-19,18;CL:0002420,3.69e-19,18;CL:0002419,3.69e-19,18;CL:0000790,3.69e-19,18;CL:0000037,2.77e-16,168;CL:0002087,6.52e-16,115;CL:0000084,1.83e-15,25;CL:0000827,1.83e-15,25;CL:0002031,5.48e-15,120;CL:0000988,5.68e-15,177;CL:0000624,1.20e-13,6;CL:0002032,5.21e-13,161;CL:0000837,5.21e-13,161;CL:0000623,1.17e-10,3;CL:0000825,1.17e-10,3;CL:0000226,8.10e-10,3;CL:0000842,8.10e-10,3;CL:0000625,1.25e-09,11;CL:0000236,2.60e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000790;5.06e-19;18!CL:0000051;2.27e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.10e-10!115;UBERON:0001049!2.66e-07!57;UBERON:0005068!2.66e-07!57;UBERON:0006241!2.66e-07!57;UBERON:0007135!2.66e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.56e-07;2!UBERON:0005058;6.56e-07;2!UBERON:0009113;6.56e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.04e-07,4;UBERON:0005058,2.04e-07,4;UBERON:0009113,2.04e-07,4;UBERON:0003295,2.04e-07,4;UBERON:0005562,2.04e-07,4 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0.631719873426831,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0.572471974262113,0.547497700291537,0.125542639594803,0.152826811495903,0.164201178899891,0.236132343941038,2.36018566109342,1.15148819429164,0.309632246632152,0,0,0.369754010166788,0.232401601740905,0.426507697462265,0.880801318004542,3.32397245119126,1.40381113229099,2.82114131930607,0,0.647787332037959,0.257575567634187,0.145398238779565,0,0,1.16214518452842,0,0,0.28769239232215,0.256160706529101,0.236482229888585,0,0.645484683583826,1.35426486594342,0,0,0.224723484445085,0,0,0,0,0.598390972864896,0,0,0,0.622822248995575,0,0.521482918420201,0.868755378820466,0,0,0.316462387440884,0.211255286311942,0,0,0,0,0.64290234678832,0,0.19891667719909,0.547992461293902,0,0.546138611262131,0,1.28019066769952,1.20118796110804,1.72425731986345,0,0,3.98449078376614,4.11066032559657,4.58727873750275,1.32171328579026,1.68152568894461,0.263384084775077,11.0157471263747,7.8602152549833,5.55124047298675,0.501559486172034,2.60737813306872,1.89379122293893,1.94826728407911,0.668462741311041,0.883817722424512,1.32920336750173,2.97884250141517,0.384273959177026,0.520237390239513,0.164437904603676,1.38175008892924,0.289803085735052,3.11401782640327,4.0131124213457,3.1360657141493,0.339928028092699,2.29932296161153,1.37450978193052,3.28925599625354,0,0.651083453856419,0.950452044448374,1.6563263098555,1.66382594500744,1.24930726552346,0.947109008176067,0,4.63695509416885,3.7441627409691,5.06885413589796,0,0,0.255725123687061,0,0.50133791063589,0,0.795285947051099,1.45990461090791,0.283604451492204,0,0.175669571386252,0.458426764241994,0,0,0,0,0,0.476981248610684,0.571994910780128,1.11437250398869,0,0,0,0,0,0,0,0,0,0.66944122552934,0.805658634218294,0,0,0,0,0.625098097988558,0,0.225222960966644,0,0,0,0,3.87780264148325,0,0,0,0.529636723252875,0,0.354668382198357,0,0,0,0.311211035399766,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0.117434498643765,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0.277064115484183,0,0,0,0.113432183160021,0.89694817844431,0,0,0.300091096084402,0.206105058476878,0,0.37223371266318,0.337552664482532,0.0974370051611986,1.51460264546469,0.0920498986422993,0,0.355009592516614,0,0,0,0,0,0.121973706129595,0.265059536642971,0,0.414644220061482,0,0.36497735907583,0,0,0,0,0,0.354920400119532,0.168584690078102,0.241011029883482,0.441175890929576,0,0.237270619111097,0,0.196221465125346,1.15424147083917,0,0,0,0,0,0,0.590789906681404,0,0.245976877086227,0,0,0,0,0,0,0,0,0.231860809950154,0.117408694235822,0.144366447761074,0,0.380508304469197,0,0,0.246217006087397,0,0,0,0,0,0.179117045405697,0,0,0.985326475791887,0.880484340132261,2.69526550203004,2.88239906833923,2.5248486685276,2.03193261734941,0,3.51652341630141,0,0.411309970813294,0.300343057843917,0.857479297891735,0.112131084345361,0.43596006883328,0.22001485746285,0.258543431515556,0,0.845302752556,0.26593811658487,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,1.2162378064119,0,0,0,0,0,0.144781306667579,0.205476322550383,0.895304816199478,0.112085143993527,3.74358444383662,5.39068937148793,3.9786341246722,0,0,0,0,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0.178428988797162,0.157702415033935,0,0,0,0,0,0,0.173767228936166,0,0,1.44737618286021,3.45142721309787,1.81436848265855,0,0,0,0.248107807818777,0,0.280660094433074,0,0,0,0,0.154209693802656,0,0.164254312027618,0.519254429183621,0,0.241718899183244,0,0.368323955743585,0.114814448164607,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.618246069886334,0.27470839445503,0.247528499761764,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0.170453254832202,0.267096106940212,0,0,0,0.10115778085555,0,0,0,0,0.532306030317022,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0.117812402345686,0,0,0,0,0.487426979262569,0,0,0.282810863907425,0,0,0,0,0,0,0,0,0,0.286822704408103,0.0982490410131212,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0.507447609232169,0,1.13929437434833,0.714695326373367,0.822724546172388,0,0,0,0.854592569019785,0,0,0.185803175125719,0.28853842595289,0.355709216742071,1.27541018183058,0,0.383010740264733,0.211673582723883,0,0,0.456469358066384,0.313359791546046,0,0,0,0,0,0,0,0.894704431569664,0.333698283423817,0,0.278406173895242,0,0,0,1.4098700508785,0.37428108081644,0.586032717087576,0.242721043499027,0,0,0.47748896947538,0.296964680832639,0,0,0.281338832821026,0.667852230137435,0,0.63337622438398,0,0.276283915531148,0,0.306806047506464,0.369254416383208,0,0,0,0,0.789147245095469,0,0,0,0.278304294485554,0,0,0,0,0,0,0.236387681767936,0.344743373241465,0,0,0,0.361789315876224,1.52581736317083,0.884634079449797,0.295547618953547,0,0,0.41827123283581,0.923403102045565,0.341826167541004,0,0,0,0,0,0,0,0,0.332423363800313,0,0,0,0,0,0,0,0.424059214301822,0.216388639742091,0,0.0884575645033392,0.611030144933625,0,0,0.104421949505455,1.7524294574976,0,0.468528891450678,0,0,0.485560759068186,0.394584402849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| 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| ||
|short_description=p5@RTTN | |||
}} | }} |
Latest revision as of 07:06, 20 September 2015
Short description: | p5@RTTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RTTN_5end |
Coexpression cluster: | C22_CD4_CD8_Natural_Basophils_CD14_Peripheral_CD19 |
Association with transcript: | -116bp_to_ENST00000255674, ENST00000437017, ENST00000454359, NM_173630, uc002lkp.2, uc002lkq.1, uc010xfb.1_5end |
EntrezGene: | RTTN |
HGNC: | 18654 |
UniProt: | Q86VV8C9JTR3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 4.08e-21 | 52 |
leukocyte | 5.64e-21 | 136 |
lymphocyte | 1.31e-20 | 53 |
common lymphoid progenitor | 1.31e-20 | 53 |
mature alpha-beta T cell | 3.69e-19 | 18 |
alpha-beta T cell | 3.69e-19 | 18 |
immature T cell | 3.69e-19 | 18 |
mature T cell | 3.69e-19 | 18 |
immature alpha-beta T cell | 3.69e-19 | 18 |
hematopoietic stem cell | 2.77e-16 | 168 |
nongranular leukocyte | 6.52e-16 | 115 |
T cell | 1.83e-15 | 25 |
pro-T cell | 1.83e-15 | 25 |
hematopoietic lineage restricted progenitor cell | 5.48e-15 | 120 |
hematopoietic cell | 5.68e-15 | 177 |
CD4-positive, alpha-beta T cell | 1.20e-13 | 6 |
hematopoietic oligopotent progenitor cell | 5.21e-13 | 161 |
hematopoietic multipotent progenitor cell | 5.21e-13 | 161 |
natural killer cell | 1.17e-10 | 3 |
pro-NK cell | 1.17e-10 | 3 |
single nucleate cell | 8.10e-10 | 3 |
mononuclear cell | 8.10e-10 | 3 |
CD8-positive, alpha-beta T cell | 1.25e-09 | 11 |
B cell | 2.60e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.04e-07 | 4 |
hemolymphoid system gland | 2.04e-07 | 4 |
thymic region | 2.04e-07 | 4 |
pharyngeal gland | 2.04e-07 | 4 |
thymus primordium | 2.04e-07 | 4 |