FFCP PHASE1:Hg19::chr17:39780634..39780644,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:39780634..39780644,-
|short_description=p4@KRT17
|description=CAGE_peak_4_at_KRT17_5end
|association_with_transcript=-86bp_to_ENST00000493253_5end
|Entre...") |
No edit summary |
||
(13 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3872 | |EntrezGene=3872 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6427 | |HGNC=6427 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-86bp_to_ENST00000493253_5end | |||
|cluster_id=chr17:39780634..39780644,- | |||
|coexpression_cluster_id=C544 | |||
|description=CAGE_peak_4_at_KRT17_5end | |||
|id=chr17:39780634..39780644,- | |||
|ontology_enrichment_celltype=CL:0002076!2.12e-32!43;CL:0000066!3.77e-27!254;CL:0000223!6.66e-25!59;CL:0002368!1.36e-17!13;CL:0002251!2.05e-17!21;CL:0002159!8.25e-17!13;CL:0000622!7.29e-12!5;CL:0000244!2.63e-10!4;CL:0000731!2.63e-10!4;CL:0000154!8.32e-10!6;CL:0002202!1.23e-09!9;CL:0002632!1.23e-09!9;CL:0002328!1.31e-08!3;CL:0000063!2.30e-08!578;CL:0000068!5.21e-08!3;CL:0000069!5.21e-08!3;CL:0000307!5.21e-08!3;CL:0000377!5.21e-08!3;CL:0002077!6.57e-08!33;CL:0002621!1.04e-07!3;CL:0002623!1.28e-07!3;CL:0000362!1.81e-07!8;CL:0002166!1.87e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.69e-34;13!CL:0002076;1.23e-28;42!CL:0002159;8.43e-20;14!CL:0002202;1.66e-18;9!CL:0002632;1.66e-18;9!CL:0002328;2.39e-15;3!CL:0000622;1.12e-14;5!CL:0000307;1.75e-14;3!CL:0002621;7.73e-14;3!CL:0000362;1.49e-12;9!CL:0000240;2.98e-12;6!CL:0000311;2.98e-12;6!CL:0000079;2.98e-12;6!CL:0000237;2.98e-12;6!CL:0000154;2.98e-12;6!CL:0000244;1.95e-11;4!CL:0000731;1.95e-11;4!CL:0000575;1.22e-10;2!CL:0002077;1.33e-10;34!CL:0000317;3.85e-10;2!CL:1000448;3.85e-10;2!CL:0002308;3.85e-10;2!CL:0002140;3.85e-10;2!CL:0002251;5.61e-10;20!CL:0000312;8.19e-09;5!CL:0000150;3.36e-08;9!CL:0002231;2.68e-07;3!CL:0002577;3.18e-07;3!CL:0002623;7.24e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.48e-35,42;CL:0002368,2.33e-34,13;CL:0000223,4.21e-24,58;CL:0000066,2.32e-21,253;CL:0002159,8.03e-20,14;CL:0002202,1.91e-18,9;CL:0002632,1.91e-18,9;CL:0002328,1.84e-15,3;CL:0000622,1.28e-14,5;CL:0000068,2.79e-14,3;CL:0000069,2.79e-14,3;CL:0000307,2.79e-14,3;CL:0000377,2.79e-14,3;CL:0002621,1.08e-13,3;CL:0000362,1.67e-12,9;CL:0000240,3.12e-12,6;CL:0000311,3.12e-12,6;CL:0000079,3.12e-12,6;CL:0000237,3.12e-12,6;CL:0000036,3.12e-12,6;CL:0000357,3.12e-12,6;CL:0000114,3.12e-12,6;CL:0000154,3.31e-12,6;CL:0002077,8.86e-12,34;CL:0000244,1.64e-11,4;CL:0000731,1.64e-11,4;CL:0000575,8.15e-11,2;CL:0000317,4.04e-10,2;CL:1000448,4.04e-10,2;CL:0002308,4.04e-10,2;CL:0002140,4.04e-10,2;CL:0002251,6.45e-10,20;CL:0002321,7.62e-09,250;CL:0000312,9.01e-09,5;CL:0000150,3.60e-08,9;CL:0002231,2.52e-07,3;CL:0002577,2.85e-07,3;CL:0002623,7.81e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000377;1.75e-14;3!CL:0000223;6.24e-14;58!CL:0000357;2.98e-12;6!CL:0000114;2.98e-12;6 | |||
|ontology_enrichment_disease=DOID:1749!6.59e-11!14;DOID:305!3.03e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!1.59e-21!72;UBERON:0004119!1.54e-18!169;UBERON:0000925!1.54e-18!169;UBERON:0006595!1.54e-18!169;UBERON:0000065!7.71e-15!53;UBERON:0000161!3.81e-12!35;UBERON:0000365!5.80e-12!5;UBERON:0008947!4.55e-11!38;UBERON:0003258!4.55e-11!38;UBERON:0000072!4.58e-11!46;UBERON:0001007!9.01e-11!155;UBERON:0001555!9.01e-11!155;UBERON:0007026!9.01e-11!155;UBERON:0003729!1.57e-10!5;UBERON:0000166!1.71e-10!21;UBERON:0001737!2.08e-10!9;UBERON:0005910!6.91e-10!6;UBERON:0007196!1.07e-09!14;UBERON:0001558!1.07e-09!14;UBERON:0000077!1.50e-09!130;UBERON:0005631!3.28e-09!14;UBERON:0000158!3.28e-09!14;UBERON:0000165!8.46e-09!28;UBERON:0000930!8.46e-09!28;UBERON:0004815!1.31e-08!3;UBERON:0002031!1.31e-08!3;UBERON:0003343!1.59e-08!4;UBERON:0004785!1.59e-08!4;UBERON:0003102!2.62e-08!95;UBERON:0003126!5.84e-08!7;UBERON:0001005!5.84e-08!7;UBERON:0004921!6.20e-08!129;UBERON:0004185!6.20e-08!129;UBERON:0003124!8.65e-08!7;UBERON:0001949!1.04e-07!3;UBERON:0001041!1.86e-07!98;UBERON:0001557!2.49e-07!19;UBERON:0000062!7.93e-07!511;UBERON:0000064!8.53e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;2.39e-15;3!UBERON:0002031;2.39e-15;3!UBERON:0001949;7.73e-14;3!UBERON:0000486;2.73e-13;12!UBERON:0007196;7.47e-11;15!UBERON:0001558;7.47e-11;15!UBERON:0002419;3.85e-10;2!UBERON:0007771;3.85e-10;2!UBERON:0003297;3.85e-10;2!UBERON:0001821;3.85e-10;2!UBERON:0003487;3.85e-10;2!UBERON:0001820;3.85e-10;2!UBERON:0005911;6.46e-10;36!UBERON:0002185;2.19e-09;5!UBERON:0004807;2.44e-09;22!UBERON:0000365;3.10e-09;5!UBERON:0000065;4.87e-08;44!UBERON:0010371;5.22e-08;31!UBERON:0005910;9.20e-08;6!UBERON:0001003;2.01e-07;15!UBERON:0007376;2.01e-07;15!UBERON:0005178;3.34e-07;34!UBERON:0002224;3.34e-07;34!UBERON:0005181;6.11e-07;35!UBERON:0000485;8.20e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.84e-15,3;UBERON:0002031,1.84e-15,3;UBERON:0001949,1.08e-13,3;UBERON:0001004,3.58e-12,74;UBERON:0004119,4.01e-12,160;UBERON:0000925,4.01e-12,160;UBERON:0006595,4.01e-12,160;UBERON:0007196,8.10e-11,15;UBERON:0001558,8.10e-11,15;UBERON:0002419,4.04e-10,2;UBERON:0007771,4.04e-10,2;UBERON:0003297,4.04e-10,2;UBERON:0001821,4.04e-10,2;UBERON:0003487,4.04e-10,2;UBERON:0001820,4.04e-10,2;UBERON:0005089,4.04e-10,2;UBERON:0005088,4.04e-10,2;UBERON:0002185,1.87e-09,5;UBERON:0003102,2.30e-09,99;UBERON:0000365,2.70e-09,5;UBERON:0000065,2.88e-08,54;UBERON:0005157,3.15e-08,47;UBERON:0005631,5.38e-08,14;UBERON:0000158,5.38e-08,14;UBERON:0005910,8.22e-08,6;UBERON:0005178,1.59e-07,34;UBERON:0002224,1.59e-07,34;UBERON:0001003,2.15e-07,15;UBERON:0007376,2.15e-07,15;UBERON:0007383,2.15e-07,15;UBERON:0005181,2.83e-07,35;UBERON:0004807,3.91e-07,28;UBERON:0005153,6.16e-07,37 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67768489791571,3.614471025339,5.54631015250181,0,0,0,0,0.401088894940283,0,0,0,0,0,0,0,0,0,0,0.575384784644301,0.256160706529101,0.47296445977717,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0.217188844705117,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91436230634034,6.3033355273353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,1.09098448236334,2.00763216772303,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0.330881918197182,0,0.71181185733329,0.134831308160164,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0,0,0,3.18275827685014,2.24803506515239,1.60846355858609,1.75918045801206,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.839910640994298,1.55952606966625,2.14940454486836,0.871901815541886,2.68367875415648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.33440328590885,0,2.41912234663744,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40607764363942,4.51196845785892,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,3.25030123018261,0,0,0,0,0,0,0,0,0,2.64455864577565,2.11409074101617,2.04180339991335,7.18220244074405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02066436723575,4.69211592875051,1.08890984861323,0,2.58303223602738,5.05414427002877,3.54744122829341,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62618933211459,0,2.15012491469462,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95193241990045,0,0.113942055847001,0,0,0.108647371922008,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881931576729399,0.522355239482415,0,0,0.387025325156341,0.219267951258557,0.0821154570532092,0,0,0,0,0,0.0633107959558787,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,0,4.47818665771911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34804281319486,0,0,0,0,1.72723677587501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.61602375474167,3.11038630016486,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0.917142992608395,0.577628330751691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07216164163037,1.87790324803345,0.691259661814092,0,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32120120187355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.870866991587845,0,0,0.0717222053926763,0.665320713092027,0.325613074443898,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67768489791571,3.614471025339,5.54631015250181,0,0,0,0,0.401088894940283,0,0,0,0,0,0,0,0,0,0,0.575384784644301,0.256160706529101,0.47296445977717,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0.217188844705117,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91436230634034,6.3033355273353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,1.09098448236334,2.00763216772303,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0.330881918197182,0,0.71181185733329,0.134831308160164,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0,0,0,0,3.18275827685014,2.24803506515239,1.60846355858609,1.75918045801206,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.839910640994298,1.55952606966625,2.14940454486836,0.871901815541886,2.68367875415648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.33440328590885,0,2.41912234663744,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40607764363942,4.51196845785892,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,3.25030123018261,0,0,0,0,0,0,0,0,0,2.64455864577565,2.11409074101617,2.04180339991335,7.18220244074405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02066436723575,4.69211592875051,1.08890984861323,0,2.58303223602738,5.05414427002877,3.54744122829341,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.62618933211459,0,2.15012491469462,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95193241990045,0,0.113942055847001,0,0,0.108647371922008,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.881931576729399,0.522355239482415,0,0,0.387025325156341,0.219267951258557,0.0821154570532092,0,0,0,0,0,0.0633107959558787,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,0,4.47818665771911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34804281319486,0,0,0,0,1.72723677587501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.61602375474167,3.11038630016486,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0.917142992608395,0.577628330751691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07216164163037,1.87790324803345,0.691259661814092,0,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32120120187355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.870866991587845,0,0,0.0717222053926763,0.665320713092027,0.325613074443898,0,0,0,0,0,0,0,0,0 | ||
|short_description=p4@KRT17 | |||
}} | }} |
Latest revision as of 06:47, 20 September 2015
Short description: | p4@KRT17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_KRT17_5end |
Coexpression cluster: | C544_nasal_Keratinocyte_Esophageal_Urothelial_Placental_Corneal_Prostate |
Association with transcript: | -86bp_to_ENST00000493253_5end |
EntrezGene: | KRT17 |
HGNC: | 6427 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.84e-15 | 3 |
epithelium of bronchus | 1.84e-15 | 3 |
gingival epithelium | 1.08e-13 | 3 |
respiratory system | 3.58e-12 | 74 |
endoderm-derived structure | 4.01e-12 | 160 |
endoderm | 4.01e-12 | 160 |
presumptive endoderm | 4.01e-12 | 160 |
tracheobronchial tree | 8.10e-11 | 15 |
lower respiratory tract | 8.10e-11 | 15 |
skin gland | 4.04e-10 | 2 |
epidermis gland | 4.04e-10 | 2 |
gland of integumental system | 4.04e-10 | 2 |
sebaceous gland | 4.04e-10 | 2 |
skin sebaceous gland | 4.04e-10 | 2 |
sweat gland | 4.04e-10 | 2 |
sweat gland placode | 4.04e-10 | 2 |
sebaceous gland placode | 4.04e-10 | 2 |
bronchus | 1.87e-09 | 5 |
surface structure | 2.30e-09 | 99 |
urothelium | 2.70e-09 | 5 |
respiratory tract | 2.88e-08 | 54 |
epithelial fold | 3.15e-08 | 47 |
extraembryonic membrane | 5.38e-08 | 14 |
membranous layer | 5.38e-08 | 14 |
transitional epithelium | 8.22e-08 | 6 |
thoracic cavity element | 1.59e-07 | 34 |
thoracic cavity | 1.59e-07 | 34 |
skin epidermis | 2.15e-07 | 15 |
outer epithelium | 2.15e-07 | 15 |
enveloping layer of ectoderm | 2.15e-07 | 15 |
thoracic segment organ | 2.83e-07 | 35 |
respiratory system epithelium | 3.91e-07 | 28 |
epithelial bud | 6.16e-07 | 37 |