FFCP PHASE1:Hg19::chr10:99185993..99186014,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:99185993..99186014,+ to FFCP PHASE1:Hg19::chr10:99185993..99186014,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5223 | |EntrezGene=5223 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8888 | |HGNC=8888 | ||
|TSSclassifier=strong | |||
|UniProt=P18669,Q6FHU2 | |UniProt=P18669,Q6FHU2 | ||
|association_with_transcript=-12bp_to_NM_002629,uc001knh.2,uc009xvo.2_5end | |||
|cluster_id=chr10:99185993..99186014,+ | |||
|coexpression_cluster_id=C3065 | |||
|description=CAGE_peak_1_at_PGAM1_5end | |||
|id=chr10:99185993..99186014,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.08e-21!180;CL:0000548!2.11e-14!679;CL:0000004!2.11e-14!679;CL:0000255!2.11e-14!679;CL:0000222!2.13e-14!119;CL:0000220!7.15e-14!246;CL:0002321!7.89e-14!248;CL:0000183!8.32e-14!59;CL:0000012!1.27e-13!682;CL:0000144!2.33e-13!625;CL:0000393!3.67e-13!60;CL:0000211!3.67e-13!60;CL:0000680!5.61e-13!57;CL:0000056!5.61e-13!57;CL:0000355!5.61e-13!57;CL:0002371!9.90e-13!591;CL:0000187!2.84e-12!54;CL:0000192!3.45e-12!42;CL:0000514!3.45e-12!42;CL:0000359!2.35e-11!32;CL:0000003!2.21e-08!722;CL:0000057!9.07e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.18e-10;32!CL:0000192;1.80e-08;43!CL:0000187;2.87e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.23e-14,121;CL:0002321,9.12e-14,250;CL:0000393,1.55e-12,61;CL:0000211,1.55e-12,61;CL:0000680,2.44e-12,58;CL:0000056,2.44e-12,58;CL:0000355,2.44e-12,58;CL:0000187,1.22e-11,55;CL:0000192,1.88e-11,43;CL:0000514,1.88e-11,43;CL:0000359,2.35e-11,32;CL:0000057,9.60e-07,76 | |||
|ontology_enrichment_development_v019=CL:0000514;1.80e-08;43!CL:0000355;7.31e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.56e-14!83;UBERON:0002329!2.56e-14!83;UBERON:0003077!2.56e-14!83;UBERON:0003059!2.56e-14!83;UBERON:0007282!2.56e-14!83;UBERON:0009618!2.56e-14!83;UBERON:0007285!2.56e-14!83;UBERON:0000486!5.06e-14!82;UBERON:0004290!2.78e-13!70;UBERON:0001637!7.87e-12!42;UBERON:0003509!7.87e-12!42;UBERON:0004572!7.87e-12!42;UBERON:0000119!4.80e-11!312;UBERON:0000483!2.07e-10!309;UBERON:0001134!2.71e-10!61;UBERON:0002036!2.71e-10!61;UBERON:0003082!2.71e-10!61;UBERON:0005256!5.19e-10!143;UBERON:0004872!5.51e-10!84;UBERON:0001981!1.05e-09!60;UBERON:0007500!1.05e-09!60;UBERON:0004537!1.05e-09!60;UBERON:0006965!1.05e-09!60;UBERON:0002385!1.26e-09!63;UBERON:0001015!1.26e-09!63;UBERON:0000383!1.26e-09!63;UBERON:0002049!2.60e-09!79;UBERON:0007798!2.60e-09!79;UBERON:0000055!1.32e-08!69;UBERON:0004573!1.64e-08!33;UBERON:0004571!1.64e-08!33;UBERON:0000475!1.93e-08!365;UBERON:0003914!2.09e-08!118;UBERON:0000064!1.34e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.72e-08;42!UBERON:0003509;3.72e-08;42!UBERON:0004572;3.72e-08;42!UBERON:0003914;1.03e-07;74!UBERON:0004573;1.11e-07;33!UBERON:0004571;1.11e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,7.73e-15,78;UBERON:0000486,1.75e-13,83;UBERON:0007524,5.52e-13,73;UBERON:0003077,5.72e-13,72;UBERON:0007285,5.72e-13,72;UBERON:0002329,1.04e-12,71;UBERON:0003059,1.04e-12,71;UBERON:0007282,1.04e-12,71;UBERON:0004290,1.04e-12,71;UBERON:0009618,1.04e-12,71;UBERON:0001637,7.87e-12,42;UBERON:0003509,7.87e-12,42;UBERON:0004572,7.87e-12,42;UBERON:0000119,4.19e-11,309;UBERON:0000483,1.82e-10,306;UBERON:0004872,4.98e-10,83;UBERON:0007500,8.84e-10,59;UBERON:0001981,8.84e-10,59;UBERON:0004537,8.84e-10,59;UBERON:0006965,8.84e-10,59;UBERON:0001134,8.93e-10,62;UBERON:0002036,8.93e-10,62;UBERON:0003082,8.93e-10,62;UBERON:0002049,2.35e-09,78;UBERON:0007798,2.35e-09,78;UBERON:0002385,3.85e-09,64;UBERON:0001015,3.85e-09,64;UBERON:0000383,3.85e-09,64;UBERON:0003914,1.01e-08,117;UBERON:0000055,1.18e-08,68;UBERON:0004573,1.64e-08,33;UBERON:0004571,1.64e-08,33;UBERON:0000490,1.18e-07,148;UBERON:0005256,4.46e-07,122;UBERON:0000025,5.57e-07,192 | |||
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| ||
|short_description=p1@PGAM1 | |||
}} | }} |
Latest revision as of 06:29, 20 September 2015
Short description: | p1@PGAM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PGAM1_5end |
Coexpression cluster: | C3065_anaplastic_Prostate_iPS_HES3GFP_Urothelial_Alveolar_H9 |
Association with transcript: | -12bp_to_NM_002629, uc001knh.2, uc009xvo.2_5end |
EntrezGene: | PGAM1 |
HGNC: | 8888 |
UniProt: | P18669Q6FHU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.23e-14 | 121 |
embryonic cell | 9.12e-14 | 250 |
electrically responsive cell | 1.55e-12 | 61 |
electrically active cell | 1.55e-12 | 61 |
muscle precursor cell | 2.44e-12 | 58 |
myoblast | 2.44e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.44e-12 | 58 |
muscle cell | 1.22e-11 | 55 |
smooth muscle cell | 1.88e-11 | 43 |
smooth muscle myoblast | 1.88e-11 | 43 |
vascular associated smooth muscle cell | 2.35e-11 | 32 |
fibroblast | 9.60e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 7.73e-15 | 78 |
multilaminar epithelium | 1.75e-13 | 83 |
dense mesenchyme tissue | 5.52e-13 | 73 |
paraxial mesoderm | 5.72e-13 | 72 |
presumptive paraxial mesoderm | 5.72e-13 | 72 |
somite | 1.04e-12 | 71 |
presomitic mesoderm | 1.04e-12 | 71 |
presumptive segmental plate | 1.04e-12 | 71 |
dermomyotome | 1.04e-12 | 71 |
trunk paraxial mesoderm | 1.04e-12 | 71 |
artery | 7.87e-12 | 42 |
arterial blood vessel | 7.87e-12 | 42 |
arterial system | 7.87e-12 | 42 |
cell layer | 4.19e-11 | 309 |
epithelium | 1.82e-10 | 306 |
splanchnic layer of lateral plate mesoderm | 4.98e-10 | 83 |
epithelial tube open at both ends | 8.84e-10 | 59 |
blood vessel | 8.84e-10 | 59 |
blood vasculature | 8.84e-10 | 59 |
vascular cord | 8.84e-10 | 59 |
skeletal muscle tissue | 8.93e-10 | 62 |
striated muscle tissue | 8.93e-10 | 62 |
myotome | 8.93e-10 | 62 |
vasculature | 2.35e-09 | 78 |
vascular system | 2.35e-09 | 78 |
muscle tissue | 3.85e-09 | 64 |
musculature | 3.85e-09 | 64 |
musculature of body | 3.85e-09 | 64 |
epithelial tube | 1.01e-08 | 117 |
vessel | 1.18e-08 | 68 |
systemic artery | 1.64e-08 | 33 |
systemic arterial system | 1.64e-08 | 33 |
unilaminar epithelium | 1.18e-07 | 148 |
trunk mesenchyme | 4.46e-07 | 122 |
tube | 5.57e-07 | 192 |