FFCP PHASE1:Hg19::chr12:6978028..6978039,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:6978028..6978039,+
|short_description=p3@TPI1
|description=CAGE_peak_3_at_TPI1_5end
|association_with_transcript=395bp_to_ENST00000495834_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7167 | |EntrezGene=7167 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12009 | |HGNC=12009 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=395bp_to_ENST00000495834_5end | |||
|cluster_id=chr12:6978028..6978039,+ | |||
|coexpression_cluster_id=C3324 | |||
|description=CAGE_peak_3_at_TPI1_5end | |||
|id=chr12:6978028..6978039,+ | |||
|ontology_enrichment_celltype=CL:0000192!6.41e-09!42;CL:0000514!6.41e-09!42;CL:0000393!6.59e-09!60;CL:0000211!6.59e-09!60;CL:0000183!8.40e-09!59;CL:0000359!8.54e-09!32;CL:0000680!1.16e-08!57;CL:0000056!1.16e-08!57;CL:0000355!1.16e-08!57;CL:0000187!1.21e-08!54;CL:0002321!3.61e-07!248;CL:0000222!5.03e-07!119;CL:0000220!5.97e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0000359;9.97e-11;32!CL:0000192;1.48e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.25e-11,32;CL:0000393,1.33e-10,61;CL:0000211,1.33e-10,61;CL:0000680,1.72e-10,58;CL:0000056,1.72e-10,58;CL:0000355,1.72e-10,58;CL:0000192,4.85e-10,43;CL:0000514,4.85e-10,43;CL:0000187,5.70e-10,55;CL:0002321,1.93e-08,250;CL:0000222,3.47e-08,121 | |||
|ontology_enrichment_development_v019=CL:0000514;1.48e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004290!3.50e-10!70;UBERON:0000914!1.48e-09!83;UBERON:0002329!1.48e-09!83;UBERON:0003077!1.48e-09!83;UBERON:0003059!1.48e-09!83;UBERON:0007282!1.48e-09!83;UBERON:0009618!1.48e-09!83;UBERON:0007285!1.48e-09!83;UBERON:0001134!2.70e-09!61;UBERON:0002036!2.70e-09!61;UBERON:0003082!2.70e-09!61;UBERON:0000486!7.39e-09!82;UBERON:0001981!1.00e-08!60;UBERON:0007500!1.00e-08!60;UBERON:0004537!1.00e-08!60;UBERON:0006965!1.00e-08!60;UBERON:0002385!1.05e-08!63;UBERON:0001015!1.05e-08!63;UBERON:0000383!1.05e-08!63;UBERON:0001637!1.83e-08!42;UBERON:0003509!1.83e-08!42;UBERON:0004572!1.83e-08!42;UBERON:0004872!2.18e-08!84;UBERON:0000055!2.66e-07!69;UBERON:0002049!3.50e-07!79;UBERON:0007798!3.50e-07!79;UBERON:0005256!8.96e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.13e-07;9!UBERON:0001557;3.13e-07;9!UBERON:0001637;5.09e-07;42!UBERON:0003509;5.09e-07;42!UBERON:0004572;5.09e-07;42!UBERON:0004573;8.58e-07;33!UBERON:0004571;8.58e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.41e-14,78;UBERON:0003077,8.40e-13,72;UBERON:0007285,8.40e-13,72;UBERON:0007524,1.91e-12,73;UBERON:0002329,2.65e-12,71;UBERON:0003059,2.65e-12,71;UBERON:0007282,2.65e-12,71;UBERON:0004290,2.65e-12,71;UBERON:0009618,2.65e-12,71;UBERON:0000486,1.42e-11,83;UBERON:0001637,5.39e-11,42;UBERON:0003509,5.39e-11,42;UBERON:0004572,5.39e-11,42;UBERON:0001134,7.08e-11,62;UBERON:0002036,7.08e-11,62;UBERON:0003082,7.08e-11,62;UBERON:0002385,3.42e-10,64;UBERON:0001015,3.42e-10,64;UBERON:0000383,3.42e-10,64;UBERON:0007500,9.16e-10,59;UBERON:0001981,9.16e-10,59;UBERON:0004537,9.16e-10,59;UBERON:0006965,9.16e-10,59;UBERON:0004872,1.18e-08,83;UBERON:0005256,1.29e-08,122;UBERON:0000490,3.60e-08,148;UBERON:0001737,5.93e-08,9;UBERON:0000055,1.01e-07,68;UBERON:0004573,1.79e-07,33;UBERON:0004571,1.79e-07,33;UBERON:0003914,3.02e-07,117;UBERON:0002049,3.74e-07,78;UBERON:0007798,3.74e-07,78 | |||
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| ||
|short_description=p3@TPI1 | |||
}} | }} |
Latest revision as of 05:58, 20 September 2015
Short description: | p3@TPI1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TPI1_5end |
Coexpression cluster: | C3324_Smooth_Tracheal_mucinous_Bronchial_chronic_iPS_testicular |
Association with transcript: | 395bp_to_ENST00000495834_5end |
EntrezGene: | TPI1 |
HGNC: | 12009 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.25e-11 | 32 |
electrically responsive cell | 1.33e-10 | 61 |
electrically active cell | 1.33e-10 | 61 |
muscle precursor cell | 1.72e-10 | 58 |
myoblast | 1.72e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.72e-10 | 58 |
smooth muscle cell | 4.85e-10 | 43 |
smooth muscle myoblast | 4.85e-10 | 43 |
muscle cell | 5.70e-10 | 55 |
embryonic cell | 1.93e-08 | 250 |
mesodermal cell | 3.47e-08 | 121 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.41e-14 | 78 |
paraxial mesoderm | 8.40e-13 | 72 |
presumptive paraxial mesoderm | 8.40e-13 | 72 |
dense mesenchyme tissue | 1.91e-12 | 73 |
somite | 2.65e-12 | 71 |
presomitic mesoderm | 2.65e-12 | 71 |
presumptive segmental plate | 2.65e-12 | 71 |
dermomyotome | 2.65e-12 | 71 |
trunk paraxial mesoderm | 2.65e-12 | 71 |
multilaminar epithelium | 1.42e-11 | 83 |
artery | 5.39e-11 | 42 |
arterial blood vessel | 5.39e-11 | 42 |
arterial system | 5.39e-11 | 42 |
skeletal muscle tissue | 7.08e-11 | 62 |
striated muscle tissue | 7.08e-11 | 62 |
myotome | 7.08e-11 | 62 |
muscle tissue | 3.42e-10 | 64 |
musculature | 3.42e-10 | 64 |
musculature of body | 3.42e-10 | 64 |
epithelial tube open at both ends | 9.16e-10 | 59 |
blood vessel | 9.16e-10 | 59 |
blood vasculature | 9.16e-10 | 59 |
vascular cord | 9.16e-10 | 59 |
splanchnic layer of lateral plate mesoderm | 1.18e-08 | 83 |
trunk mesenchyme | 1.29e-08 | 122 |
unilaminar epithelium | 3.60e-08 | 148 |
larynx | 5.93e-08 | 9 |
vessel | 1.01e-07 | 68 |
systemic artery | 1.79e-07 | 33 |
systemic arterial system | 1.79e-07 | 33 |
epithelial tube | 3.02e-07 | 117 |
vasculature | 3.74e-07 | 78 |
vascular system | 3.74e-07 | 78 |