FFCP PHASE1:Hg19::chr5:130599735..130599802,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56990 | |EntrezGene=56990 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18547 | |HGNC=18547 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NRR3,D6REL0 | |UniProt=Q9NRR3,D6REL0 | ||
|association_with_transcript=0bp_to_ENST00000360515,ENST00000503291,ENST00000504701,ENST00000505065_5end | |association_with_transcript=0bp_to_ENST00000360515,ENST00000503291,ENST00000504701,ENST00000505065_5end | ||
|cluster_id=chr5:130599735..130599802,+ | |||
|coexpression_cluster_id=C175 | |coexpression_cluster_id=C175 | ||
|description=CAGE_peak_1_at_CDC42SE2_5end | |description=CAGE_peak_1_at_CDC42SE2_5end | ||
|id=chr5:130599735..130599802,+ | |id=chr5:130599735..130599802,+ | ||
|ontology_enrichment_celltype=CL:0000037!1.60e-56!172;CL:0000566!1.60e-56!172;CL:0000738!1.55e-53!140;CL:0002032!1.14e-52!165;CL:0000837!1.14e-52!165;CL:0000988!8.11e-51!182;CL:0002031!1.13e-42!124;CL:0002087!2.05e-41!119;CL:0000763!4.81e-29!112;CL:0000049!4.81e-29!112;CL:0000766!7.34e-25!76;CL:0000542!2.38e-21!53;CL:0000051!2.38e-21!53;CL:0000838!2.55e-21!52;CL:0000557!3.79e-21!71;CL:0000839!6.79e-20!70;CL:0002009!1.63e-18!65;CL:0002194!8.11e-18!63;CL:0000576!8.11e-18!63;CL:0000040!8.11e-18!63;CL:0000559!8.11e-18!63;CL:0002057!9.44e-17!42;CL:0000860!4.32e-15!45;CL:0000791!2.69e-12!18;CL:0000789!2.69e-12!18;CL:0002420!2.69e-12!18;CL:0002419!2.69e-12!18;CL:0000790!2.69e-12!18;CL:0000084!1.26e-11!25;CL:0000827!1.26e-11!25;CL:0000945!3.50e-09!24;CL:0000826!3.50e-09!24;CL:0000625!2.49e-08!11 | |ontology_enrichment_celltype=CL:0000037!1.60e-56!172;CL:0000566!1.60e-56!172;CL:0000738!1.55e-53!140;CL:0002032!1.14e-52!165;CL:0000837!1.14e-52!165;CL:0000988!8.11e-51!182;CL:0002031!1.13e-42!124;CL:0002087!2.05e-41!119;CL:0000763!4.81e-29!112;CL:0000049!4.81e-29!112;CL:0000766!7.34e-25!76;CL:0000542!2.38e-21!53;CL:0000051!2.38e-21!53;CL:0000838!2.55e-21!52;CL:0000557!3.79e-21!71;CL:0000839!6.79e-20!70;CL:0002009!1.63e-18!65;CL:0002194!8.11e-18!63;CL:0000576!8.11e-18!63;CL:0000040!8.11e-18!63;CL:0000559!8.11e-18!63;CL:0002057!9.44e-17!42;CL:0000860!4.32e-15!45;CL:0000791!2.69e-12!18;CL:0000789!2.69e-12!18;CL:0002420!2.69e-12!18;CL:0002419!2.69e-12!18;CL:0000790!2.69e-12!18;CL:0000084!1.26e-11!25;CL:0000827!1.26e-11!25;CL:0000945!3.50e-09!24;CL:0000826!3.50e-09!24;CL:0000625!2.49e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0002087;1.41e-12;104!CL:0000860;2.34e-12;33!CL:0002057;2.34e-12;33!CL:0000542;2.40e-12;53!CL:0000791;2.69e-12;18!CL:0000789;2.69e-12;18!CL:0002419;2.69e-12;18!CL:0000576;5.84e-12;48!CL:0000084;1.30e-11;25!CL:0000738;2.01e-11;136!CL:0000473;2.61e-11;39!CL:0000234;2.61e-11;39!CL:0000766;3.66e-11;69!CL:0000988;1.67e-09;177!CL:0000945;3.40e-09;24!CL:0000763;9.31e-09;100!CL:0000625;2.46e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.02e-58,168;CL:0000738,1.51e-55,136;CL:0002032,2.31e-54,161;CL:0000837,2.31e-54,161;CL:0000988,2.53e-53,177;CL:0002031,1.53e-44,120;CL:0002087,2.64e-43,115;CL:0000763,1.57e-30,108;CL:0000049,1.57e-30,108;CL:0000766,1.05e-26,72;CL:0000557,7.50e-23,67;CL:0000839,1.57e-21,66;CL:0000542,2.38e-21,53;CL:0000051,2.38e-21,53;CL:0000838,2.55e-21,52;CL:0002009,3.71e-20,61;CL:0002194,1.89e-19,59;CL:0000576,1.89e-19,59;CL:0000040,1.89e-19,59;CL:0000559,1.89e-19,59;CL:0000473,1.48e-17,48;CL:0000234,1.48e-17,48;CL:0000860,9.44e-17,42;CL:0002057,9.44e-17,42;CL:0000791,2.69e-12,18;CL:0000789,2.69e-12,18;CL:0002420,2.69e-12,18;CL:0002419,2.69e-12,18;CL:0000790,2.69e-12,18;CL:0000084,1.26e-11,25;CL:0000827,1.26e-11,25;CL:0000945,3.50e-09,24;CL:0000826,3.50e-09,24;CL:0000625,2.49e-08,11 | |||
|ontology_enrichment_development_v019=CL:0002057;2.17e-12;42!CL:0000051;2.40e-12;53!CL:0000790;2.69e-12;18!CL:0000049;6.93e-09;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.21e-25!102;UBERON:0003061!9.21e-25!102;UBERON:0002193!7.96e-23!112;UBERON:0007023!1.73e-17!115;UBERON:0002371!4.68e-16!80;UBERON:0002405!2.18e-13!115;UBERON:0001474!6.34e-13!86;UBERON:0002780!2.30e-10!41;UBERON:0001890!2.30e-10!41;UBERON:0006240!2.30e-10!41;UBERON:0003080!2.48e-10!42;UBERON:0001049!1.39e-09!57;UBERON:0005068!1.39e-09!57;UBERON:0006241!1.39e-09!57;UBERON:0007135!1.39e-09!57;UBERON:0001893!2.38e-09!34;UBERON:0002020!3.96e-09!34;UBERON:0003528!3.96e-09!34;UBERON:0002791!5.00e-09!33;UBERON:0004765!5.79e-09!101;UBERON:0001434!5.79e-09!101;UBERON:0001869!7.10e-09!32;UBERON:0002619!2.49e-08!22;UBERON:0001950!1.15e-07!20;UBERON:0000178!1.15e-07!15;UBERON:0000179!1.15e-07!15;UBERON:0000463!1.15e-07!15;UBERON:0000956!3.61e-07!25;UBERON:0000203!3.61e-07!25;UBERON:0002616!5.40e-07!59 | |ontology_enrichment_uberon=UBERON:0002390!9.21e-25!102;UBERON:0003061!9.21e-25!102;UBERON:0002193!7.96e-23!112;UBERON:0007023!1.73e-17!115;UBERON:0002371!4.68e-16!80;UBERON:0002405!2.18e-13!115;UBERON:0001474!6.34e-13!86;UBERON:0002780!2.30e-10!41;UBERON:0001890!2.30e-10!41;UBERON:0006240!2.30e-10!41;UBERON:0003080!2.48e-10!42;UBERON:0001049!1.39e-09!57;UBERON:0005068!1.39e-09!57;UBERON:0006241!1.39e-09!57;UBERON:0007135!1.39e-09!57;UBERON:0001893!2.38e-09!34;UBERON:0002020!3.96e-09!34;UBERON:0003528!3.96e-09!34;UBERON:0002791!5.00e-09!33;UBERON:0004765!5.79e-09!101;UBERON:0001434!5.79e-09!101;UBERON:0001869!7.10e-09!32;UBERON:0002619!2.49e-08!22;UBERON:0001950!1.15e-07!20;UBERON:0000178!1.15e-07!15;UBERON:0000179!1.15e-07!15;UBERON:0000463!1.15e-07!15;UBERON:0000956!3.61e-07!25;UBERON:0000203!3.61e-07!25;UBERON:0002616!5.40e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.35e-08;22!UBERON:0001893;3.84e-08;34!UBERON:0001869;4.23e-08;32!UBERON:0002791;5.62e-08;32!UBERON:0003528;5.75e-08;34!UBERON:0002020;5.75e-08;34!UBERON:0002780;8.93e-08;41!UBERON:0001890;8.93e-08;41!UBERON:0001950;1.10e-07;20!UBERON:0000178;1.12e-07;15!UBERON:0000179;1.12e-07;15!UBERON:0000463;1.12e-07;15!UBERON:0000956;3.49e-07;25!UBERON:0000203;3.49e-07;25 | |||
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| ||
|short_description=p1@CDC42SE2 | |short_description=p1@CDC42SE2 | ||
}} | }} |
Latest revision as of 03:35, 20 September 2015
Short description: | p1@CDC42SE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDC42SE2_5end |
Coexpression cluster: | C175_Eosinophils_Neutrophils_CD4_Basophils_CD19_CD8_Natural |
Association with transcript: | 0bp_to_ENST00000360515, ENST00000503291, ENST00000504701, ENST00000505065_5end |
EntrezGene: | CDC42SE2 |
HGNC: | 18547 |
UniProt: | Q9NRR3D6REL0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.56e-26 | 98 |
blood island | 3.56e-26 | 98 |
hemolymphoid system | 4.84e-24 | 108 |
immune system | 6.32e-18 | 93 |
bone marrow | 2.89e-17 | 76 |
adult organism | 3.68e-17 | 114 |
bone element | 7.18e-14 | 82 |
skeletal element | 1.08e-11 | 90 |
regional part of forebrain | 2.30e-10 | 41 |
forebrain | 2.30e-10 | 41 |
anterior neural tube | 2.30e-10 | 41 |
future forebrain | 2.30e-10 | 41 |
neural tube | 1.40e-09 | 56 |
neural rod | 1.40e-09 | 56 |
future spinal cord | 1.40e-09 | 56 |
neural keel | 1.40e-09 | 56 |
telencephalon | 2.38e-09 | 34 |
brain grey matter | 3.96e-09 | 34 |
gray matter | 3.96e-09 | 34 |
regional part of nervous system | 5.20e-09 | 53 |
regional part of brain | 5.20e-09 | 53 |
cerebral hemisphere | 7.10e-09 | 32 |
regional part of telencephalon | 9.29e-09 | 32 |
skeletal system | 1.07e-08 | 100 |
regional part of cerebral cortex | 2.49e-08 | 22 |
neocortex | 1.15e-07 | 20 |
blood | 1.15e-07 | 15 |
haemolymphatic fluid | 1.15e-07 | 15 |
organism substance | 1.15e-07 | 15 |
cerebral cortex | 3.61e-07 | 25 |
pallium | 3.61e-07 | 25 |