FFCP PHASE1:Hg19::chr5:130588734..130588761,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=56990 | |EntrezGene=56990 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18547 | |HGNC=18547 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000515533_5end | |association_with_transcript=0bp_to_ENST00000515533_5end | ||
|cluster_id=chr5:130588734..130588761,+ | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_CDC42SE2_5end | |description=CAGE_peak_3_at_CDC42SE2_5end | ||
|id=chr5:130588734..130588761,+ | |id=chr5:130588734..130588761,+ | ||
|ontology_enrichment_celltype=CL:0000738!3.63e-70!140;CL:0000037!3.74e-66!172;CL:0000566!3.74e-66!172;CL:0002032!1.60e-60!165;CL:0000837!1.60e-60!165;CL:0000988!8.33e-60!182;CL:0002031!1.88e-55!124;CL:0002087!1.91e-54!119;CL:0000542!1.95e-39!53;CL:0000051!1.95e-39!53;CL:0000838!1.29e-38!52;CL:0000766!6.78e-24!76;CL:0000763!3.54e-23!112;CL:0000049!3.54e-23!112;CL:0000084!6.93e-23!25;CL:0000827!6.93e-23!25;CL:0000791!3.18e-19!18;CL:0000789!3.18e-19!18;CL:0002420!3.18e-19!18;CL:0002419!3.18e-19!18;CL:0000790!3.18e-19!18;CL:0000839!7.29e-19!70;CL:0000557!2.93e-17!71;CL:0002194!5.21e-15!63;CL:0000576!5.21e-15!63;CL:0000040!5.21e-15!63;CL:0000559!5.21e-15!63;CL:0002009!7.45e-15!65;CL:0000945!2.59e-14!24;CL:0000826!2.59e-14!24;CL:0002057!5.65e-14!42;CL:0000625!1.32e-12!11;CL:0000134!1.40e-12!358;CL:0000860!2.58e-12!45;CL:0002320!1.27e-11!365;CL:0000094!1.09e-08!8;CL:0000219!2.13e-08!390;CL:0000236!2.35e-08!14;CL:0000624!2.28e-07!6 | |ontology_enrichment_celltype=CL:0000738!3.63e-70!140;CL:0000037!3.74e-66!172;CL:0000566!3.74e-66!172;CL:0002032!1.60e-60!165;CL:0000837!1.60e-60!165;CL:0000988!8.33e-60!182;CL:0002031!1.88e-55!124;CL:0002087!1.91e-54!119;CL:0000542!1.95e-39!53;CL:0000051!1.95e-39!53;CL:0000838!1.29e-38!52;CL:0000766!6.78e-24!76;CL:0000763!3.54e-23!112;CL:0000049!3.54e-23!112;CL:0000084!6.93e-23!25;CL:0000827!6.93e-23!25;CL:0000791!3.18e-19!18;CL:0000789!3.18e-19!18;CL:0002420!3.18e-19!18;CL:0002419!3.18e-19!18;CL:0000790!3.18e-19!18;CL:0000839!7.29e-19!70;CL:0000557!2.93e-17!71;CL:0002194!5.21e-15!63;CL:0000576!5.21e-15!63;CL:0000040!5.21e-15!63;CL:0000559!5.21e-15!63;CL:0002009!7.45e-15!65;CL:0000945!2.59e-14!24;CL:0000826!2.59e-14!24;CL:0002057!5.65e-14!42;CL:0000625!1.32e-12!11;CL:0000134!1.40e-12!358;CL:0000860!2.58e-12!45;CL:0002320!1.27e-11!365;CL:0000094!1.09e-08!8;CL:0000219!2.13e-08!390;CL:0000236!2.35e-08!14;CL:0000624!2.28e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000791;7.69e-32;18!CL:0000789;7.69e-32;18!CL:0002419;7.69e-32;18!CL:0000084;1.10e-31;25!CL:0000542;4.91e-25;53!CL:0000625;1.84e-20;11!CL:0000094;1.10e-13;8!CL:0002087;6.53e-13;104!CL:0000738;8.11e-12;136!CL:0000624;1.64e-11;6!CL:0000945;8.41e-11;24!CL:0000081;1.83e-09;11!CL:0000988;2.71e-07;177!CL:0000097;2.95e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.46e-56,136;CL:0000037,2.07e-46,168;CL:0000542,1.15e-44,53;CL:0000051,1.15e-44,53;CL:0000838,2.43e-43,52;CL:0000988,7.35e-43,177;CL:0002032,1.64e-40,161;CL:0000837,1.64e-40,161;CL:0002087,1.34e-38,115;CL:0002031,2.00e-38,120;CL:0000791,8.01e-32,18;CL:0000789,8.01e-32,18;CL:0002420,8.01e-32,18;CL:0002419,8.01e-32,18;CL:0000790,8.01e-32,18;CL:0000084,1.22e-31,25;CL:0000827,1.22e-31,25;CL:0000625,1.84e-20,11;CL:0000094,9.29e-14,8;CL:0000766,5.36e-12,72;CL:0000624,1.68e-11,6;CL:0000134,1.95e-11,354;CL:0000945,7.35e-11,24;CL:0000826,7.35e-11,24;CL:0002320,8.11e-11,361;CL:0000081,1.63e-09,11;CL:0000219,1.11e-08,386;CL:0000763,1.55e-08,108;CL:0000049,1.55e-08,108;CL:0000097,2.05e-07,5;CL:0002028,2.05e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000790;7.69e-32;18!CL:0000051;4.91e-25;53 | |||
|ontology_enrichment_disease=DOID:2531!1.20e-08!51;DOID:0060083!1.20e-08!51;DOID:0060058!8.01e-07!10 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.86e-26!102;UBERON:0003061!2.86e-26!102;UBERON:0002193!9.64e-24!112;UBERON:0002371!5.05e-15!80;UBERON:0001474!7.52e-13!86;UBERON:0007023!8.32e-13!115;UBERON:0002405!1.55e-12!115;UBERON:0002384!1.11e-10!375;UBERON:0000178!7.68e-09!15;UBERON:0000179!7.68e-09!15;UBERON:0000463!7.68e-09!15;UBERON:0004765!9.77e-09!101;UBERON:0001434!9.77e-09!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.78e-15;15!UBERON:0000179;4.78e-15;15!UBERON:0000463;4.78e-15;15!UBERON:0002390;5.27e-08;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.30e-15,15;UBERON:0000179,4.30e-15,15;UBERON:0000463,4.30e-15,15;UBERON:0002390,1.08e-14,98;UBERON:0003061,1.08e-14,98;UBERON:0002193,2.70e-13,108;UBERON:0002384,5.56e-10,371;UBERON:0002370,1.99e-07,4;UBERON:0005058,1.99e-07,4;UBERON:0009113,1.99e-07,4;UBERON:0003295,1.99e-07,4;UBERON:0005562,1.99e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36881557818649,1.88831355734875,1.18066171970519,5.11373559903575,12.666370137208,1.70297735647684,0,0,0,3.87336002901508,1.56386155736164,0.293600439334847,2.21598163412751,2.20598892217156,2.38711957787437,1.56740831967947,4.21061765824673,2.06060454107349,0.290796477559129,0,0.727752183563449,0.232429036905685,0.411167888021826,0.619412741790207,0.575384784644301,0.768482119587302,1.41889337933151,0.344745680736619,0,0,0.188242339542605,0.545812300115692,0.224723484445085,0,1.28371610830437,0,0.989553900560148,0.598390972864896,0.426224750532694,0.870627715885752,2.26954089876456,1.24564449799115,0,0,0.868755378820466,0.605399502633369,1.84138817993782,2.21523671208619,0.422510572623884,0.850417199860174,0.628975936525128,1.12328631146495,0.150176892841506,2.25015821375912,0.570025487482497,0.99458338599545,0.91332076882317,5.27988733383968,3.82297027883492,3.55803701545422,0.426730222566507,2.00197993518006,1.72425731986345,1.32208974556972,0,0.569212969109448,2.34894875748376,2.29363936875137,0,1.12101712596307,0.526768169550154,18.0972988504726,12.1833336452241,16.4481199199607,17.3873955206305,7.17028986593899,4.2610302516126,3.89653456815823,42.0017422457104,22.3900489680876,22.817991142113,36.0169138807471,30.741916734162,28.3529377680535,8.71520894399483,11.3303507292198,17.3881851441032,10.6766325476683,11.7717964359474,8.36284190439814,19.8291349720741,27.2086550457364,16.4941173831662,44.278446103413,23.5738406599832,23.4390043388311,23.7613011112094,15.8103875031661,22.1416837297144,32.4819889036099,19.8892891716974,18.064815932263,16.7333596876528,18.453373509062,15.2065624076939,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0.324547393654683,0.870648686496336,0.398873881556595,1.43094374583205,1.14398982156026,2.60020250930695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.7670626154095,11.6334079244498,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,1.7658523976586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492434012174795,0,0,0,0,0,0,0,0,2.46331618947972,1.49682337822484,1.65862492432618,2.01767934783746,1.8936365013957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,8.40638579951455,13.0040301733272,12.075144192133,10.6524720112191,0,0,0,0.167516265334349,0,14.9801404789436,8.97484377612075,22.3784377255459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9925455151275,6.47142602455851,8.96511485548932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,1.0457418040996,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,5.58192370155386,11.4695581071356,9.68400218196076,13.1027476501784,14.3976795580168,13.6179395350471,12.9607544937148,5.55187623405989,0,0,0,2.9728508020115,0.865615277858669,0.142283686696828,4.78278818186467,0,0,0.211673582723883,0.324621940274555,2.80797178113459,1.59764275323235,0.313359791546046,0,0,0.642352300414798,0.201799707191048,1.70338495076131,0.343505344755765,2.15068535015921,2.01308497103174,2.0021897005429,0.781552381608161,0,0,0,0,0,0,0.293016358543788,0,3.56618829687931,0,0.23874448473769,0.296964680832639,0,0,0.140669416410513,0,0.988823245360557,0,0.597743964753209,2.48655523978033,0,0,0.984678443688556,0,0,0,0,0.295930216910801,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0.120596438625408,0,0,0,0,0,0,0.461701551022782,0,0,1.34636466614658,0,0.31900115973192,0.183195186803725,1.06606955203727,7.15353087370155,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0.442287822516696,0,0,0,0,0.337005664903385,0,0.234264445725339,0.364909578431332,0,0,0,1.20990716048664,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,0,0,0,0.189932387867636,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31443677139657,0,0.229160424011684,0,0.199679000498991,0.429226048136571,0.446342914883745,0.134366944973453,0,0,0,0,0,0,0.0846733320657845,0,0.408610218334727,0,0,0,0.2249738915515,0,0.182248669974074,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0.574647645245373,0,0,0.146552233678082,0,0,0.13223260174269,0,0,3.31040978959853,0,1.24271716604159,0.992332043623902,0,3.16660755790329,0,0,0.5013797880454,0,0,0,0,0,0.250381861413,0,0.221858103073705,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,1.55888247071511,0.664324201566815,0.981392365535065,0,0,0,0.19998739585493,0.640150378164845,0.861074898304078,0,0,0,0,0,0,0,0,0.33946505990805,0.212574920101683,0.247871528518004,0,0,1.57723490002507,0,0,0,0.128458450192919,0,0,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.0634158101939068,0,0,0.496211178389294,0,0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| ||
|short_description=p3@CDC42SE2 | |short_description=p3@CDC42SE2 | ||
}} | }} |
Latest revision as of 03:32, 20 September 2015
Short description: | p3@CDC42SE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CDC42SE2_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000515533_5end |
EntrezGene: | CDC42SE2 |
HGNC: | 18547 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 5.46e-56 | 136 |
hematopoietic stem cell | 2.07e-46 | 168 |
lymphocyte | 1.15e-44 | 53 |
common lymphoid progenitor | 1.15e-44 | 53 |
lymphoid lineage restricted progenitor cell | 2.43e-43 | 52 |
hematopoietic cell | 7.35e-43 | 177 |
hematopoietic oligopotent progenitor cell | 1.64e-40 | 161 |
hematopoietic multipotent progenitor cell | 1.64e-40 | 161 |
nongranular leukocyte | 1.34e-38 | 115 |
hematopoietic lineage restricted progenitor cell | 2.00e-38 | 120 |
mature alpha-beta T cell | 8.01e-32 | 18 |
alpha-beta T cell | 8.01e-32 | 18 |
immature T cell | 8.01e-32 | 18 |
mature T cell | 8.01e-32 | 18 |
immature alpha-beta T cell | 8.01e-32 | 18 |
T cell | 1.22e-31 | 25 |
pro-T cell | 1.22e-31 | 25 |
CD8-positive, alpha-beta T cell | 1.84e-20 | 11 |
granulocyte | 9.29e-14 | 8 |
myeloid leukocyte | 5.36e-12 | 72 |
CD4-positive, alpha-beta T cell | 1.68e-11 | 6 |
mesenchymal cell | 1.95e-11 | 354 |
lymphocyte of B lineage | 7.35e-11 | 24 |
pro-B cell | 7.35e-11 | 24 |
connective tissue cell | 8.11e-11 | 361 |
blood cell | 1.63e-09 | 11 |
motile cell | 1.11e-08 | 386 |
myeloid cell | 1.55e-08 | 108 |
common myeloid progenitor | 1.55e-08 | 108 |
mast cell | 2.05e-07 | 5 |
basophil mast progenitor cell | 2.05e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
blood | 4.30e-15 | 15 |
haemolymphatic fluid | 4.30e-15 | 15 |
organism substance | 4.30e-15 | 15 |
hematopoietic system | 1.08e-14 | 98 |
blood island | 1.08e-14 | 98 |
hemolymphoid system | 2.70e-13 | 108 |
connective tissue | 5.56e-10 | 371 |
thymus | 1.99e-07 | 4 |
hemolymphoid system gland | 1.99e-07 | 4 |
thymic region | 1.99e-07 | 4 |
pharyngeal gland | 1.99e-07 | 4 |
thymus primordium | 1.99e-07 | 4 |