FFCP PHASE1:Hg19::chr14:50360253..50360273,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=382 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=659 | |||
|TSSclassifier=strong | |||
|UniProt=P62330 | |||
|association_with_transcript=-114bp_to_AF047432_5end | |||
|cluster_id=chr14:50360253..50360273,+ | |||
|description=CAGE_peak_12_at_ARF6_5end | |||
|id=chr14:50360253..50360273,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.36e-22!42;CL:0000860!6.23e-21!45;CL:0000839!1.15e-16!70;CL:0002194!7.70e-16!63;CL:0000576!7.70e-16!63;CL:0000040!7.70e-16!63;CL:0000559!7.70e-16!63;CL:0002009!8.76e-16!65;CL:0000557!4.37e-15!71;CL:0000766!8.44e-15!76;CL:0000738!3.06e-14!140;CL:0002031!1.25e-13!124;CL:0002087!2.75e-13!119;CL:0000037!7.47e-08!172;CL:0000566!7.47e-08!172;CL:0000763!1.37e-07!112;CL:0000049!1.37e-07!112;CL:0002032!1.95e-07!165;CL:0000837!1.95e-07!165;CL:0000063!2.26e-07!578;CL:0002393!2.67e-07!9;CL:0002397!2.67e-07!9;CL:0000988!2.86e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.14e-34;33!CL:0002057;2.14e-34;33!CL:0000576;4.66e-27;48!CL:0000473;2.80e-25;39!CL:0000234;2.80e-25;39!CL:0000766;1.99e-18;69!CL:0002393;4.33e-10;6!CL:0002397;4.33e-10;6!CL:0000763;1.27e-09;100!CL:0000767;3.10e-09;3!CL:0002087;1.39e-08;104!CL:0000875;9.59e-08;3!CL:0002396;9.59e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.21e-52,42;CL:0002057,1.21e-52,42;CL:0000473,7.85e-48,48;CL:0000234,7.85e-48,48;CL:0002009,3.34e-37,61;CL:0002194,2.57e-36,59;CL:0000576,2.57e-36,59;CL:0000040,2.57e-36,59;CL:0000559,2.57e-36,59;CL:0000839,1.04e-35,66;CL:0000766,5.34e-35,72;CL:0000557,4.78e-33,67;CL:0000763,2.71e-27,108;CL:0000049,2.71e-27,108;CL:0000738,3.47e-23,136;CL:0002031,1.79e-21,120;CL:0002087,5.65e-19,115;CL:0002032,8.22e-19,161;CL:0000837,8.22e-19,161;CL:0000037,1.42e-18,168;CL:0000988,5.43e-18,177;CL:0002393,5.76e-17,9;CL:0002397,5.76e-17,9;CL:0000767,2.85e-09,3;CL:0000875,3.27e-08,3;CL:0002396,3.27e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;9.13e-40;42!CL:0000049;4.70e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.65e-13!80;UBERON:0002390!8.52e-13!102;UBERON:0003061!8.52e-13!102;UBERON:0001474!2.03e-11!86;UBERON:0002193!3.99e-11!112;UBERON:0004765!2.01e-10!101;UBERON:0001434!2.01e-10!101;UBERON:0003081!1.57e-08!216;UBERON:0002405!1.16e-07!115;UBERON:0002204!2.66e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.85e-28,76;UBERON:0001474,2.58e-25,82;UBERON:0002405,8.01e-23,93;UBERON:0002390,9.76e-23,98;UBERON:0003061,9.76e-23,98;UBERON:0004765,3.01e-22,90;UBERON:0002193,3.62e-21,108;UBERON:0001434,4.10e-19,100;UBERON:0003081,2.44e-10,203;UBERON:0002204,3.21e-10,167 | |||
|phase1_expression=0.181678379270557,0,0.422863212287913,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0.655324116390517,1.31883489114227,0.123766352960047,0,0,0,0,0.487932798790507,0.123121058076788,0.204000691244253,0,0,0.136874425072884,0.627713197974014,0.152826811495903,0,0.157421562627358,2.75354993794233,3.0706351847777,5.10893206943051,0,0.30120591877825,0.369754010166788,0,0,0,0.553995408531877,1.80490002723128,1.73608696572681,0.223915474239924,0,0,3.05336301437086,1.13362783106643,1.94067248950253,2.78914844286822,1.6446715520873,1.54853185447552,1.1507695692886,1.5369642391746,1.41889337933151,1.72372840368309,0.645484683583826,2.70852973188684,2.07066573496865,1.91034305040492,2.24723484445085,1.53041946185451,1.92557416245656,1.27867425159808,1.31940520074686,2.79249120670285,0.426224750532694,1.45104619314292,0.56738522469114,1.24564449799115,0.251248665256743,0,0.868755378820466,3.02699751316684,1.10483290796269,0.632924774881769,2.32380814943136,1.91343869968539,1.25795187305026,1.12328631146495,0.150176892841506,0,1.99508920618874,1.59133341759272,1.46131323011707,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0.263384084775077,0.196709770113833,0,1.02800749499755,1.67186495390678,1.30368906653436,0,0,1.6711568532776,0.883817722424512,1.32920336750173,0.812411591295047,2.43373507478783,2.73124629875744,0.657751618414705,1.10540007114339,1.44901542867526,0.444859689486181,0,0,0.793165398882963,0.383220493601921,0.34362744548263,0.506039384039006,0,0.651083453856419,0.950452044448374,0.150575119077773,0.511946444617674,0,0.710331756132051,1.64225599384209,0.604820229674197,0.802320587350522,0.289648807765598,0,0.670700859703636,0,0.361439152384566,0.50133791063589,0.434539556882471,0,0.973269740605272,0.0945348171640679,0.221729397462564,0.087834785693126,0.0654895377488563,1.45718115317017,0.370784442784429,0,0.174129737299267,0.398873881556595,0,1.14398982156026,0,0,0,0,0,0,0,0.417989933073621,0,0.35576626268671,0,0.402829317109147,0.760272105718513,0,0,0,0,0,0,1.53316637465883,0,0,0,0,0.872188104285069,0.993943903390637,0.25326102332916,0.397227542439656,0,0.709336764396714,0,0,0.98667019366864,0.311211035399766,0.134710672069688,0,0,0,0,0.312160076830321,0.570471821544449,1.04614076386261,0.117434498643765,0.161872944368132,0.140450806702248,0.204154171254893,0.122834317311768,0.206651562351531,0,0,0,0,0,0,0.277064115484183,0.877955241761676,0.30648779579902,0.751190294532984,0.340296549480063,0,0.213557388818567,0.211931901159562,0,0,0.257640540045629,0,0.168776332241266,0.0974370051611986,0,0,0,0,0.201504196455281,0.339121184620975,0,0.272746120590835,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0.643240938192885,0,0.464367928031979,0,0.118306800039844,0,0.241011029883482,0.441175890929576,0,0,0.269662616320329,0.196221465125346,0.38474715694639,0.738155454624648,0,0,0,0,0.982827216677626,0,0,0,0.171567810298526,0.109750285408626,0,0.703702806881416,0.555530670951178,0.325808305310325,0,0,0.115930404975077,0,0.288732895522148,0,0,0,0,0.738651018262192,0.234004265139238,0.148631162288728,0,0,0.141775097242386,1.88072897675981,0.290633938513962,0.766765358330422,0,0.44024217006613,0.207328115540772,0.144119953416961,0.25248486685276,0.063497894292169,0.381988425558278,0,0,0,0,0,0.224262168690721,0.43596006883328,0.5867062865676,0,0,0,0.26593811658487,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,0,0.479249710983165,0,0,1.59259437334337,0.205476322550383,0.358121926479791,0,0.197030760201927,0.862510299438069,1.02674429023799,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0.892144943985809,0.315404830067869,0,0.601892199455438,0,0,0,0.368738337083406,0.173767228936166,0,0,0.620304078368662,0.862856803274467,0.853820462427555,0.909382714338778,0,0.907170879989041,0.496215615637554,0.920771839728375,0.280660094433074,0,0,0.482561763430822,1.48418066444991,0,0.177561725313127,0.0821271560138091,0,0,0,0,0.920809889358963,0.114814448164607,0.546273504020151,0,1.80479845162965,0.847168708148562,0,0,0.422206515571503,0,0,0,0,0.270946437543853,1.00337954770971,1.27438136522519,0.831076008928724,0.671624264166535,1.09629938322967,1.0457418040996,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0.307007349452259,0.275673144969061,0,0.145016693914229,0.0852266274161009,0.178064071293475,0.826424576804891,0.576570202095319,0.255225424989168,0.708104465988849,0.464845549297286,0,0.6970372701606,0,0.532306030317022,0,0.55597265731176,0,0.372158369359667,0.316379424718726,0.38126038784765,0.511795582622668,0,0,0,0,0,0,0.808729926293264,1.58510321173008,0.842516912477962,0,0,0,0.136499911407986,0.141405431953713,0,0.551365343546124,0,0.876901770507525,0,0,0.202910376962704,0,0.563391205064483,0.143411352204052,0.294747123039363,0,0,0.633322905892992,0.329294892959902,0.379473173765715,0.349934720244983,0.288666338176536,0.670302275535787,1.08890984861323,0.188287601553558,0.43050537267123,0,2.66058092122005,1.1486170010348,0,0,0,0,1.23408681925858,0,0.540031437238115,0.79312517629427,0,0,0.245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| |||
|short_description=p12@ARF6 | |||
}} |
Latest revision as of 02:43, 20 September 2015
Short description: | p12@ARF6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_ARF6_5end |
Coexpression cluster: | NA |
Association with transcript: | -114bp_to_AF047432_5end |
EntrezGene: | ARF6 |
HGNC: | 659 |
UniProt: | P62330 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.21e-52 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.21e-52 | 42 |
defensive cell | 7.85e-48 | 48 |
phagocyte | 7.85e-48 | 48 |
macrophage dendritic cell progenitor | 3.34e-37 | 61 |
monopoietic cell | 2.57e-36 | 59 |
monocyte | 2.57e-36 | 59 |
monoblast | 2.57e-36 | 59 |
promonocyte | 2.57e-36 | 59 |
myeloid lineage restricted progenitor cell | 1.04e-35 | 66 |
myeloid leukocyte | 5.34e-35 | 72 |
granulocyte monocyte progenitor cell | 4.78e-33 | 67 |
myeloid cell | 2.71e-27 | 108 |
common myeloid progenitor | 2.71e-27 | 108 |
leukocyte | 3.47e-23 | 136 |
hematopoietic lineage restricted progenitor cell | 1.79e-21 | 120 |
nongranular leukocyte | 5.65e-19 | 115 |
hematopoietic oligopotent progenitor cell | 8.22e-19 | 161 |
hematopoietic multipotent progenitor cell | 8.22e-19 | 161 |
hematopoietic stem cell | 1.42e-18 | 168 |
hematopoietic cell | 5.43e-18 | 177 |
intermediate monocyte | 5.76e-17 | 9 |
CD14-positive, CD16-positive monocyte | 5.76e-17 | 9 |
basophil | 2.85e-09 | 3 |
non-classical monocyte | 3.27e-08 | 3 |
CD14-low, CD16-positive monocyte | 3.27e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.85e-28 | 76 |
bone element | 2.58e-25 | 82 |
immune system | 8.01e-23 | 93 |
hematopoietic system | 9.76e-23 | 98 |
blood island | 9.76e-23 | 98 |
skeletal element | 3.01e-22 | 90 |
hemolymphoid system | 3.62e-21 | 108 |
skeletal system | 4.10e-19 | 100 |
lateral plate mesoderm | 2.44e-10 | 203 |
musculoskeletal system | 3.21e-10 | 167 |