FFCP PHASE1:Hg19::chr12:6875609..6875623,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:6875609..6875623,+
|short_description=p4@PTMS
|description=CAGE_peak_4_at_PTMS_5end
|association_with_transcript=66bp_to_ENST00000309083_5end
|EntrezGene...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5763 | |EntrezGene=5763 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9629 | |HGNC=9629 | ||
|TSSclassifier=strong | |||
|UniProt=P20962 | |UniProt=P20962 | ||
|association_with_transcript=66bp_to_ENST00000309083_5end | |||
|cluster_id=chr12:6875609..6875623,+ | |||
|description=CAGE_peak_4_at_PTMS_5end | |||
|id=chr12:6875609..6875623,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.85e-25!180;CL:0000220!5.72e-13!246;CL:0002321!1.11e-12!248;CL:0000183!1.75e-12!59;CL:0000680!2.42e-12!57;CL:0000056!2.42e-12!57;CL:0000355!2.42e-12!57;CL:0000222!1.89e-11!119;CL:0000393!1.97e-11!60;CL:0000211!1.97e-11!60;CL:0000057!2.21e-11!75;CL:0000187!2.63e-11!54;CL:0000192!1.02e-08!42;CL:0000514!1.02e-08!42;CL:0000359!2.42e-08!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;5.66e-08;32!CL:0000192;5.86e-07;43!CL:0000187;8.69e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.89e-13,250;CL:0000680,1.72e-12,58;CL:0000056,1.72e-12,58;CL:0000355,1.72e-12,58;CL:0000222,1.02e-11,121;CL:0000393,1.40e-11,61;CL:0000211,1.40e-11,61;CL:0000057,1.62e-11,76;CL:0000187,1.88e-11,55;CL:0000192,7.47e-09,43;CL:0000514,7.47e-09,43;CL:0000359,2.31e-08,32 | |||
|ontology_enrichment_development_v019=CL:0000514;5.86e-07;43!CL:0000355;8.50e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.95e-16!365;UBERON:0000468!1.20e-15!659;UBERON:0004872!2.03e-14!84;UBERON:0000467!2.07e-14!625;UBERON:0002049!2.70e-14!79;UBERON:0007798!2.70e-14!79;UBERON:0000480!2.87e-14!626;UBERON:0001981!1.62e-13!60;UBERON:0007500!1.62e-13!60;UBERON:0004537!1.62e-13!60;UBERON:0006965!1.62e-13!60;UBERON:0000119!1.67e-13!312;UBERON:0003914!1.79e-13!118;UBERON:0000481!2.27e-13!347;UBERON:0000055!2.30e-13!69;UBERON:0002100!3.95e-13!216;UBERON:0000483!6.68e-13!309;UBERON:0005256!1.09e-12!143;UBERON:0000914!1.24e-12!83;UBERON:0002329!1.24e-12!83;UBERON:0003077!1.24e-12!83;UBERON:0003059!1.24e-12!83;UBERON:0007282!1.24e-12!83;UBERON:0009618!1.24e-12!83;UBERON:0007285!1.24e-12!83;UBERON:0004290!1.87e-12!70;UBERON:0001637!1.31e-11!42;UBERON:0003509!1.31e-11!42;UBERON:0004572!1.31e-11!42;UBERON:0000486!1.65e-11!82;UBERON:0004535!3.31e-11!110;UBERON:0003104!3.82e-11!238;UBERON:0009142!3.82e-11!238;UBERON:0001134!1.12e-10!61;UBERON:0002036!1.12e-10!61;UBERON:0003082!1.12e-10!61;UBERON:0001009!1.18e-10!113;UBERON:0002385!1.64e-10!63;UBERON:0001015!1.64e-10!63;UBERON:0000383!1.64e-10!63;UBERON:0000477!2.41e-10!286;UBERON:0000923!4.67e-10!604;UBERON:0005291!4.67e-10!604;UBERON:0006598!4.67e-10!604;UBERON:0002532!4.67e-10!604;UBERON:0002050!4.77e-10!605;UBERON:0005423!4.77e-10!605;UBERON:0004111!5.73e-10!241;UBERON:0000922!8.13e-10!612;UBERON:0000025!1.31e-09!194;UBERON:0004573!1.19e-08!33;UBERON:0004571!1.19e-08!33;UBERON:0000490!1.70e-08!138;UBERON:0003102!5.73e-07!95;UBERON:0000926!6.86e-07!448;UBERON:0004120!6.86e-07!448;UBERON:0006603!6.86e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;3.05e-08;42!UBERON:0003509;3.05e-08;42!UBERON:0004572;3.05e-08;42!UBERON:0004573;7.89e-08;33!UBERON:0004571;7.89e-08;33!UBERON:0007500;1.74e-07;56!UBERON:0001981;1.74e-07;56!UBERON:0004537;1.74e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,8.67e-15,78;UBERON:0004872,2.76e-14,83;UBERON:0002049,3.67e-14,78;UBERON:0007798,3.67e-14,78;UBERON:0007500,2.18e-13,59;UBERON:0001981,2.18e-13,59;UBERON:0004537,2.18e-13,59;UBERON:0006965,2.18e-13,59;UBERON:0003914,2.42e-13,117;UBERON:0000055,3.13e-13,68;UBERON:0002100,5.47e-13,199;UBERON:0000119,6.32e-13,309;UBERON:0003077,1.14e-12,72;UBERON:0007285,1.14e-12,72;UBERON:0002329,1.15e-12,71;UBERON:0003059,1.15e-12,71;UBERON:0007282,1.15e-12,71;UBERON:0004290,1.15e-12,71;UBERON:0009618,1.15e-12,71;UBERON:0007524,1.59e-12,73;UBERON:0000483,2.46e-12,306;UBERON:0005256,5.34e-12,122;UBERON:0003104,1.02e-11,160;UBERON:0009142,1.02e-11,160;UBERON:0000486,1.02e-11,83;UBERON:0001637,1.22e-11,42;UBERON:0003509,1.22e-11,42;UBERON:0004572,1.22e-11,42;UBERON:0004535,4.15e-11,109;UBERON:0001134,7.02e-11,62;UBERON:0002036,7.02e-11,62;UBERON:0003082,7.02e-11,62;UBERON:0002385,1.03e-10,64;UBERON:0001015,1.03e-10,64;UBERON:0000383,1.03e-10,64;UBERON:0001009,1.48e-10,112;UBERON:0000490,3.38e-10,148;UBERON:0004111,1.22e-09,240;UBERON:0000025,2.67e-09,192;UBERON:0005423,4.62e-09,581;UBERON:0000922,4.85e-09,592;UBERON:0004573,1.14e-08,33;UBERON:0004571,1.14e-08,33;UBERON:0000923,1.85e-08,560;UBERON:0010316,1.85e-08,560;UBERON:0005291,1.85e-08,560;UBERON:0006598,1.85e-08,560;UBERON:0010317,1.85e-08,560;UBERON:0002532,1.85e-08,560;UBERON:0002050,3.09e-08,564 | |||
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| ||
|short_description=p4@PTMS | |||
}} | }} |
Latest revision as of 02:40, 20 September 2015
Short description: | p4@PTMS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PTMS_5end |
Coexpression cluster: | NA |
Association with transcript: | 66bp_to_ENST00000309083_5end |
EntrezGene: | PTMS |
HGNC: | 9629 |
UniProt: | P20962 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.89e-13 | 250 |
muscle precursor cell | 1.72e-12 | 58 |
myoblast | 1.72e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.72e-12 | 58 |
mesodermal cell | 1.02e-11 | 121 |
electrically responsive cell | 1.40e-11 | 61 |
electrically active cell | 1.40e-11 | 61 |
fibroblast | 1.62e-11 | 76 |
muscle cell | 1.88e-11 | 55 |
smooth muscle cell | 7.47e-09 | 43 |
smooth muscle myoblast | 7.47e-09 | 43 |
vascular associated smooth muscle cell | 2.31e-08 | 32 |