FFCP PHASE1:Hg19::chr4:100484838..100484901,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=93587 | |EntrezGene=93587 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28403 | |HGNC=28403 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TBZ6,D6R954 | |UniProt=Q8TBZ6,D6R954 | ||
|association_with_transcript=0bp_to_ENST00000455368,ENST00000514547_5end | |association_with_transcript=0bp_to_ENST00000455368,ENST00000514547_5end | ||
|cluster_id=chr4:100484838..100484901,- | |||
|description=CAGE_peak_1_at_RG9MTD2_5end | |description=CAGE_peak_1_at_RG9MTD2_5end | ||
|id=chr4:100484838..100484901,- | |id=chr4:100484838..100484901,- | ||
|ontology_enrichment_celltype=CL:0000542!9.22e-12!53;CL:0000051!9.22e-12!53;CL:0000838!3.26e-11!52;CL:0000945!1.63e-09!24;CL:0000826!1.63e-09!24 | |ontology_enrichment_celltype=CL:0000542!9.22e-12!53;CL:0000051!9.22e-12!53;CL:0000838!3.26e-11!52;CL:0000945!1.63e-09!24;CL:0000826!1.63e-09!24 | ||
|ontology_enrichment_celltype_v019=CL:0000945;8.21e-10;24!CL:0000542;1.47e-07;53 | |ontology_enrichment_celltype_v019=CL:0000945;8.21e-10;24!CL:0000542;1.47e-07;53 | ||
|ontology_enrichment_celltype_v019_2=CL:0000542,7.25e-12,53;CL:0000051,7.25e-12,53;CL:0000838,2.58e-11,52;CL:0000945,1.47e-09,24;CL:0000826,1.47e-09,24 | |||
|ontology_enrichment_development_v019=CL:0000051;1.47e-07;53 | |ontology_enrichment_development_v019=CL:0000051;1.47e-07;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.90e-13!115;UBERON:0001049!5.51e-11!57;UBERON:0005068!5.51e-11!57;UBERON:0006241!5.51e-11!57;UBERON:0007135!5.51e-11!57;UBERON:0003080!2.54e-08!42;UBERON:0002780!5.27e-08!41;UBERON:0001890!5.27e-08!41;UBERON:0006240!5.27e-08!41;UBERON:0002616!5.99e-08!59;UBERON:0002020!1.43e-07!34;UBERON:0003528!1.43e-07!34;UBERON:0000955!1.54e-07!69;UBERON:0006238!1.54e-07!69;UBERON:0001893!2.27e-07!34;UBERON:0001017!2.34e-07!82;UBERON:0002791!4.23e-07!33 | |ontology_enrichment_uberon=UBERON:0007023!7.90e-13!115;UBERON:0001049!5.51e-11!57;UBERON:0005068!5.51e-11!57;UBERON:0006241!5.51e-11!57;UBERON:0007135!5.51e-11!57;UBERON:0003080!2.54e-08!42;UBERON:0002780!5.27e-08!41;UBERON:0001890!5.27e-08!41;UBERON:0006240!5.27e-08!41;UBERON:0002616!5.99e-08!59;UBERON:0002020!1.43e-07!34;UBERON:0003528!1.43e-07!34;UBERON:0000955!1.54e-07!69;UBERON:0006238!1.54e-07!69;UBERON:0001893!2.27e-07!34;UBERON:0001017!2.34e-07!82;UBERON:0002791!4.23e-07!33 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.14e-12,114;UBERON:0001049,8.31e-11,56;UBERON:0005068,8.31e-11,56;UBERON:0006241,8.31e-11,56;UBERON:0007135,8.31e-11,56;UBERON:0000073,1.89e-09,53;UBERON:0002616,1.89e-09,53;UBERON:0002780,4.82e-08,41;UBERON:0001890,4.82e-08,41;UBERON:0003080,4.82e-08,41;UBERON:0006240,4.82e-08,41;UBERON:0003528,1.33e-07,34;UBERON:0002020,1.33e-07,34;UBERON:0001893,2.11e-07,34;UBERON:0000955,2.51e-07,68;UBERON:0006238,2.51e-07,68;UBERON:0001017,5.16e-07,81 | |||
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| ||
|short_description=p1@RG9MTD2 | |short_description=p1@RG9MTD2 | ||
}} | }} |
Latest revision as of 01:42, 20 September 2015
Short description: | p1@RG9MTD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RG9MTD2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000455368, ENST00000514547_5end |
EntrezGene: | RG9MTD2 |
HGNC: | 28403 |
UniProt: | Q8TBZ6D6R954 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 7.25e-12 | 53 |
common lymphoid progenitor | 7.25e-12 | 53 |
lymphoid lineage restricted progenitor cell | 2.58e-11 | 52 |
lymphocyte of B lineage | 1.47e-09 | 24 |
pro-B cell | 1.47e-09 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.14e-12 | 114 |
neural tube | 8.31e-11 | 56 |
neural rod | 8.31e-11 | 56 |
future spinal cord | 8.31e-11 | 56 |
neural keel | 8.31e-11 | 56 |
regional part of nervous system | 1.89e-09 | 53 |
regional part of brain | 1.89e-09 | 53 |
regional part of forebrain | 4.82e-08 | 41 |
forebrain | 4.82e-08 | 41 |
anterior neural tube | 4.82e-08 | 41 |
future forebrain | 4.82e-08 | 41 |
brain grey matter | 1.33e-07 | 34 |
gray matter | 1.33e-07 | 34 |
telencephalon | 2.11e-07 | 34 |
brain | 2.51e-07 | 68 |
future brain | 2.51e-07 | 68 |
central nervous system | 5.16e-07 | 81 |