FFCP PHASE1:Hg19::chr2:216003325..216003359,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26154 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14637 | |||
|TSSclassifier=strong | |||
|UniProt=Q86UK0 | |||
|association_with_transcript=-174bp_to_ENST00000272895,NM_173076,uc002vew.2,uc010zjn.1_5end | |||
|cluster_id=chr2:216003325..216003359,- | |||
|coexpression_cluster_id=C4181 | |||
|description=CAGE_peak_1_at_ABCA12_5end | |||
|id=chr2:216003325..216003359,- | |||
|ontology_enrichment_celltype=CL:0002076!5.23e-28!43;CL:0000066!7.12e-25!254;CL:0000223!7.44e-24!59;CL:0002251!3.56e-16!21;CL:0002368!3.18e-11!13;CL:0000622!8.86e-09!5;CL:0002159!2.40e-08!13;CL:0002327!3.82e-08!4;CL:0000154!3.29e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.66e-18;42!CL:0002251;2.15e-13;20!CL:0000622;7.05e-13;5!CL:0002327;7.06e-12;4!CL:0002368;1.32e-11;13!CL:0000154;1.14e-10;6!CL:0002621;1.21e-08;3!CL:0002623;3.06e-08;3!CL:0000362;2.47e-07;9!CL:0000240;3.29e-07;6!CL:0000311;3.29e-07;6!CL:0000079;3.29e-07;6!CL:0000237;3.29e-07;6!CL:0000150;5.56e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,8.70e-22,42;CL:0000223,2.91e-19,58;CL:0000066,1.90e-17,253;CL:0002251,2.36e-13,20;CL:0000622,8.12e-13,5;CL:0002327,7.88e-12,4;CL:0002368,1.41e-11,13;CL:0000154,1.28e-10,6;CL:0002621,1.12e-08,3;CL:0002623,3.14e-08,3;CL:0000362,2.49e-07,9;CL:0000240,3.40e-07,6;CL:0000311,3.40e-07,6;CL:0000079,3.40e-07,6;CL:0000237,3.40e-07,6;CL:0000036,3.40e-07,6;CL:0000357,3.40e-07,6;CL:0000114,3.40e-07,6;CL:0000150,5.98e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;7.98e-10;58!CL:0000357;3.29e-07;6!CL:0000114;3.29e-07;6 | |||
|ontology_enrichment_disease=DOID:1749!7.08e-15!14;DOID:305!2.26e-13!106;DOID:0050687!3.25e-10!143;DOID:5093!6.19e-08!4;DOID:1612!6.19e-08!4 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.88e-14;14!DOID:5093;1.67e-11;4!DOID:1612;1.67e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,7.83e-14,14;DOID:5093,1.67e-11,4;DOID:1612,1.67e-11,4;DOID:305,1.25e-09,106;DOID:0050687,7.35e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001004!8.43e-15!72;UBERON:0004119!2.34e-13!169;UBERON:0000925!2.34e-13!169;UBERON:0006595!2.34e-13!169;UBERON:0000166!1.02e-10!21;UBERON:0000065!3.17e-10!53;UBERON:0005631!8.39e-10!14;UBERON:0000158!8.39e-10!14;UBERON:0001007!1.31e-09!155;UBERON:0001555!1.31e-09!155;UBERON:0007026!1.31e-09!155;UBERON:0000077!5.08e-09!130;UBERON:0001041!1.75e-08!98;UBERON:0003729!1.98e-08!5;UBERON:0000165!2.04e-08!28;UBERON:0000930!2.04e-08!28;UBERON:0000161!2.09e-08!35;UBERON:0001911!3.82e-08!4;UBERON:0005333!3.82e-08!4;UBERON:0008425!3.82e-08!4;UBERON:0005311!3.82e-08!4;UBERON:0000344!1.04e-07!12;UBERON:0003124!1.07e-07!7;UBERON:0005178!2.14e-07!34;UBERON:0002224!2.14e-07!34;UBERON:0004921!3.07e-07!129;UBERON:0004185!3.07e-07!129;UBERON:0003343!3.12e-07!4;UBERON:0004785!3.12e-07!4;UBERON:0005181!4.46e-07!35;UBERON:0000072!7.73e-07!46;UBERON:0000915!7.85e-07!52 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;7.06e-12;4!UBERON:0000161;8.36e-12;19!UBERON:0000166;8.36e-12;19!UBERON:0000165;1.23e-10;28!UBERON:0003729;5.15e-09;13!UBERON:0000344;5.53e-09;20!UBERON:0001949;1.21e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,4.89e-12,22;UBERON:0001911,7.88e-12,4;UBERON:0005333,7.88e-12,4;UBERON:0008425,7.88e-12,4;UBERON:0005311,7.88e-12,4;UBERON:0001004,4.78e-11,74;UBERON:0000165,4.00e-10,29;UBERON:0000930,4.00e-10,29;UBERON:0000161,2.14e-09,36;UBERON:0003729,5.68e-09,13;UBERON:0000344,6.11e-09,20;UBERON:0001949,1.12e-08,3;UBERON:0004119,1.50e-08,160;UBERON:0000925,1.50e-08,160;UBERON:0006595,1.50e-08,160;UBERON:0005631,5.94e-08,14;UBERON:0000158,5.94e-08,14;UBERON:0004923,5.00e-07,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.655324116390517,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20936304141395,3.20192298854788,1.81034797021462,0,0,0.464448369948228,0,0.6024118375565,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.63826047591912,4.90943017063502,6.02289650316908,0,0,0,0.414644220061482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,9.32877425973317,8.99214026060957,4.72486170334665,1.11106134190236,0,0,0,0,0,0,0,0,2.37061319387782,7.72637545885385,0,0,0,0,0.16798212819886,0.283550194484773,32.0619511276197,18.6005720648936,3.06706143332169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.909382714338778,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,24.2173000901407,0,0,0,0,3.61972084390749,0,0,0.73886140225013,0,0,0,0,0,0,1.78413391131527,0.831076008928724,0,0,0,0,0,0,0.9273691048295,0,0,4.01985876597321,5.20048196829217,0,0,0,0,0,0,0,0,0,18.3466256050686,11.5314040419064,6.50824833722379,13.0493537303659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23377295992253,0.670302275535787,1.08890984861323,0.753150406214233,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,3.18552280775341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30998378285754,0,0,0,0,10.5047573284584,2.67268212749375,9.21482106297696,0,0,0,0,0,0,0,0,0,2.95403533106567,0,0.449341755736634,40.2797643020121,0,0,0,0,0,0,0,14.3235268596878,79.5885999965381,0,1.593108275997,1.77977555204936,0.709163045303809,0,0,0,0,0,0,0,0,0,0,13.3846794507459,1.30815439456455,0,6.45578932286568,0,0,1.91400695839152,0.549585560411174,4.26427820814908,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0.593042257361244,0,0,0,0,0,0,33.8499790752515,0,0.394584402849391,0,0,0,0.300646838828985,0,0,0,0,0,3.9845336444171,0.138674673013139,0.173559738335131,1.7638631534588,0.174118413160805,0.34945333648406,0,0,0,0,2.42472541221049,0,0.90392296312213,0,0,0,1.36885967914362,0.0801588202515337,0,0.599428828746391,0.576361668616424,0,0,0,0,6.36373893465348,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,4.72445172258151,7.7380195455795,0,6.70869375198532,0.0788057072991982,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02652102730598,3.52407511158336,0.213574825135389,0,0,0,0,0,20.4269202486458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02496607435179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.3093966793111,13.6856997207254,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.040657389199,8.02194118764634,2.01771458373847,0.577628330751691,0,0,0,0,0,0,1.83334686136996,0,0,0,0,0,0,0,0,0.496211178389294,0,3.44958554626907,0,0,0.606965604236632,3.41493287026946,2.12885688390333,0,0.171488009437418,0,0,0,0,0,0,0,0,0.647782773655864,0,0,0,0,0,0,2.07216164163037,1.7071847709395,13.1339335744677,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,2.91426595835484,0,0,0,0,0,0.150962843566674,0,0,0,0,0.942706188406504,0,0,0,0,0,0,3.39799930144758,13.7486532726356,11.6455307666178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.36757959813938,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0.31037357147929,0,0,0,4.13661821004227,0.342233301085281,2.1552656964668,5.4508876098434,0.665320713092027,7.16348763776576,0,0,0,0,0,1.22068853494722,0,0,4.16739039994203 | |||
|short_description=p1@ABCA12 | |||
}} |
Latest revision as of 01:37, 20 September 2015
Short description: | p1@ABCA12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ABCA12_5end |
Coexpression cluster: | C4181_breast_ductal_bile_Mammary_Prostate_oral_malignant |
Association with transcript: | -174bp_to_ENST00000272895, NM_173076, uc002vew.2, uc010zjn.1_5end |
EntrezGene: | ABCA12 |
HGNC: | 14637 |
UniProt: | Q86UK0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 8.70e-22 | 42 |
endodermal cell | 2.91e-19 | 58 |
epithelial cell | 1.90e-17 | 253 |
epithelial cell of alimentary canal | 2.36e-13 | 20 |
acinar cell | 8.12e-13 | 5 |
mammary gland epithelial cell | 7.88e-12 | 4 |
respiratory epithelial cell | 1.41e-11 | 13 |
protein secreting cell | 1.28e-10 | 6 |
gingival epithelial cell | 1.12e-08 | 3 |
acinar cell of salivary gland | 3.14e-08 | 3 |
epidermal cell | 2.49e-07 | 9 |
stratified squamous epithelial cell | 3.40e-07 | 6 |
keratin accumulating cell | 3.40e-07 | 6 |
stratified epithelial cell | 3.40e-07 | 6 |
keratinizing barrier epithelial cell | 3.40e-07 | 6 |
epithelial fate stem cell | 3.40e-07 | 6 |
stratified epithelial stem cell | 3.40e-07 | 6 |
surface ectodermal cell | 3.40e-07 | 6 |
glandular epithelial cell | 5.98e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
oral opening | 4.89e-12 | 22 |
mammary gland | 7.88e-12 | 4 |
mammary bud | 7.88e-12 | 4 |
mammary ridge | 7.88e-12 | 4 |
mammary placode | 7.88e-12 | 4 |
respiratory system | 4.78e-11 | 74 |
mouth | 4.00e-10 | 29 |
stomodeum | 4.00e-10 | 29 |
orifice | 2.14e-09 | 36 |
mouth mucosa | 5.68e-09 | 13 |
mucosa | 6.11e-09 | 20 |
gingival epithelium | 1.12e-08 | 3 |
endoderm-derived structure | 1.50e-08 | 160 |
endoderm | 1.50e-08 | 160 |
presumptive endoderm | 1.50e-08 | 160 |
extraembryonic membrane | 5.94e-08 | 14 |
membranous layer | 5.94e-08 | 14 |
organ component layer | 5.00e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 7.83e-14 | 14 |
thoracic cancer | 1.67e-11 | 4 |
breast cancer | 1.67e-11 | 4 |
carcinoma | 1.25e-09 | 106 |
cell type cancer | 7.35e-07 | 143 |