FFCP PHASE1:Hg19::chr17:38504601..38504634,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5914 | |EntrezGene=5914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=9864 | |HGNC=9864 | ||
|TSSclassifier=strong | |||
|UniProt=P10276 | |UniProt=P10276 | ||
|association_with_transcript=33bp_to_X58685_5end | |association_with_transcript=33bp_to_X58685_5end | ||
|cluster_id=chr17:38504601..38504634,+ | |||
|coexpression_cluster_id=C13 | |coexpression_cluster_id=C13 | ||
|description=CAGE_peak_9_at_RARA_5end | |description=CAGE_peak_9_at_RARA_5end | ||
|id=chr17:38504601..38504634,+ | |id=chr17:38504601..38504634,+ | ||
|ontology_enrichment_celltype=CL:0000860;1.83e-32;33!CL:0002057;1.83e-32;33!CL:0000473;4.61e-22;39!CL:0000234;4.61e-22;39!CL:0000576;5.59e-21;48!CL:0000766;1.18e-18;69!CL:0000763;8.11e-10;100!CL:0000094;3.57e-09;8!CL:0000081;1.69e-08;11!CL:0000775;6.04e-08;3!CL:0000097;2.08e-07;5 | |ontology_enrichment_celltype=CL:0002057!5.72e-21!42;CL:0000860!1.72e-20!45;CL:0000766!2.20e-16!76;CL:0000557!1.52e-14!71;CL:0002009!1.58e-13!65;CL:0000839!3.29e-13!70;CL:0002194!9.33e-13!63;CL:0000576!9.33e-13!63;CL:0000040!9.33e-13!63;CL:0000559!9.33e-13!63;CL:0000763!1.96e-09!112;CL:0000049!1.96e-09!112;CL:0000738!2.45e-07!140 | ||
| | |ontology_enrichment_celltype_v019=CL:0000860;1.83e-32;33!CL:0002057;1.83e-32;33!CL:0000473;4.61e-22;39!CL:0000234;4.61e-22;39!CL:0000576;5.59e-21;48!CL:0000766;1.18e-18;69!CL:0000763;8.11e-10;100!CL:0000094;3.57e-09;8!CL:0000081;1.69e-08;11!CL:0000775;6.04e-08;3!CL:0000097;2.08e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,7.34e-42,42;CL:0002057,7.34e-42,42;CL:0000766,2.16e-39,72;CL:0000473,2.26e-35,48;CL:0000234,2.26e-35,48;CL:0000557,1.32e-31,67;CL:0000839,2.12e-30,66;CL:0002009,6.58e-27,61;CL:0002194,2.48e-26,59;CL:0000576,2.48e-26,59;CL:0000040,2.48e-26,59;CL:0000559,2.48e-26,59;CL:0000763,1.02e-24,108;CL:0000049,1.02e-24,108;CL:0000738,2.00e-20,136;CL:0000988,4.47e-16,177;CL:0002031,4.62e-16,120;CL:0002032,3.36e-15,161;CL:0000837,3.36e-15,161;CL:0000037,6.55e-15,168;CL:0002087,9.00e-13,115;CL:0000094,1.80e-09,8;CL:0002320,6.73e-09,361;CL:0000081,1.13e-08,11;CL:0000775,4.77e-08,3;CL:0002393,6.38e-08,9;CL:0002397,6.38e-08,9;CL:0000134,7.41e-08,354;CL:0000097,1.23e-07,5;CL:0002028,1.23e-07,5;CL:0000875,8.42e-07,3;CL:0002396,8.42e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.27e-29;42!CL:0000049;1.89e-08;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.27e-12!112;UBERON:0002371!6.84e-12!80;UBERON:0002390!1.06e-11!102;UBERON:0003061!1.06e-11!102;UBERON:0001474!8.47e-11!86;UBERON:0004765!3.46e-09!101;UBERON:0001434!3.46e-09!101;UBERON:0002405!9.63e-09!115;UBERON:0002204!1.92e-08!167;UBERON:0003081!6.74e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.34e-26,76;UBERON:0001474,7.04e-24,82;UBERON:0002390,9.00e-24,98;UBERON:0003061,9.00e-24,98;UBERON:0004765,3.95e-22,90;UBERON:0002193,1.69e-20,108;UBERON:0001434,4.31e-20,100;UBERON:0002405,8.13e-20,93;UBERON:0003081,1.63e-14,203;UBERON:0002204,3.31e-12,167;UBERON:0000926,3.44e-10,315;UBERON:0004120,3.44e-10,315;UBERON:0006603,3.44e-10,315;UBERON:0002384,8.70e-09,371 | |||
|phase1_expression=0.181678379270557,1.2846031433459,0.704772020479856,0,1.78784437770915,1.74467704820074,0,0,0,0,1.39560233594486,0,0,1.11389717664042,0.662794751455832,0,0,0,0.487932798790507,0.123121058076788,0,0.313454721478088,0,0.273748850145768,0,0.305653622991805,0.328402357799783,0.157421562627358,1.96682138424452,0,1.23852898652861,0,0.6024118375565,0,0,0,0,0.553995408531877,2.00544447470142,0,0.671746422719773,0,0.515151135268373,2.18097358169347,1.51150377475524,1.4555043671269,2.55671940596253,0.822335776043652,1.85823822537062,3.74000110018796,2.30544635876191,1.18241114944293,2.06847408441971,0,2.70852973188684,4.51781614902251,3.27487380069415,1.57306439111559,4.59125838556354,2.56743221660875,5.11469700639233,3.95821560224059,2.59302754908121,2.13112375266347,0.870627715885752,0.56738522469114,0.622822248995575,2.00998932205395,3.12889751052121,1.73751075764093,3.63239701580021,0.736555271975129,0.316462387440884,1.47878700418359,2.76385589954557,0.628975936525128,1.12328631146495,0.450530678524519,1.6072558669708,1.42506371870624,1.79025009479181,1.64397738388171,0,0,0,0,0,0,0,0,0,0,1.52909291250092,0,0.560508562981536,0,0,0,0,0.501559486172034,0.32592226663359,0,0,0.668462741311041,0.589211814949674,0.664601683750863,0.270803863765016,0.25618263945135,0.780356085359269,0.328875809207352,0.552700035571697,0.289803085735052,0.14828656316206,0,0,0.339928028092699,0,0,0,0,0,0,0.451725357233318,0.127986611154418,0,0.236777252044017,0.821127996921047,0,0.534880391567015,0.289648807765598,0,0.670700859703636,0.12786256184353,1.0843174571537,1.50401373190767,0.579386075843295,0,0,0.189069634328136,0.665188192387692,0.527008714158756,0.196468613246569,0.364295288292542,0,0,0.348259474598534,0.26591592103773,0,0,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0,0.825354125820202,0.208994966536811,0.258416759169329,0,0.33472061276467,0,0,0.488124115096339,0.367663080345869,0.81014194788176,0.267899184852239,0,0,0,0,0.366403487860815,1.31780417436063,0,0,0,1.01304409331664,0.132409180813219,0.286836620748814,0.354668382198357,0.560677600142307,0,1.48000529050296,0.311211035399766,0.538842688278752,0.326923806226917,0.151357427644931,0.576175924479999,0,0,0,0.298897361103602,0.23486899728753,0.323745888736263,0,0.204154171254893,0.368502951935304,0.413303124703062,1.18800285728205,0.741800787835671,0.910161361938026,0.718618141816238,0,0.125118519871964,0,0,0,0.300476117813194,0,0.179389635688862,0.213557388818567,0,0.300091096084402,0.103052529238439,0,0.744467425326359,0,0.194874010322397,0.252433774244115,0.184099797284599,0.969876340912871,0,0.10075209822764,0.339121184620975,0.386521706326594,0,0,0,0,0,0.10366105501537,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,0.236613600079688,0.168584690078102,0,0.441175890929576,0,0.237270619111097,0,0.196221465125346,0.38474715694639,1.4763109092493,0,0,0,1.26755034821831,0.982827216677626,0,0.441463099414651,0.245976877086227,0,0.439001141634502,0,0.201057944823262,0.0925884451585296,0,0,0,0,0.234817388471643,0.144366447761074,0,0.380508304469197,0,0.858486162094873,0.246217006087397,0,0,0,0,0.141775097242386,0.0895585227028483,0,0.383382679165211,0,1.58487181223807,3.7319060797339,3.89123874225796,2.77733353538036,0.063497894292169,0.381988425558278,0,1.71072446022705,0.205654985406647,0.300343057843917,0.857479297891735,0.224262168690721,0.87192013766656,0.07333828582095,0.129271715757778,0,1.690605505112,1.32969058292435,0,0,0,0,0.285955987316295,0.542621605391443,0,0,0,0,0,0,0.199945982364114,0,0.502257091432126,0,0.239624855491583,1.14861935834114,0,0.144781306667579,0.205476322550383,0,0,0,0.215627574859517,0.385029108839245,0,0,0,0,0,2.99602809578873,23.932916736322,6.21623270154053,0.12269149171914,0,0.813795071099207,0.831883446123229,0.892144943985809,0.473107245101804,0.468565659970853,0.300946099727719,0,1.03473071292505,0,0,0.0868836144680828,1.17480694477644,2.05886054286514,0.82707210449155,1.2942852049117,0.960548020230999,0.606255142892519,0,0,0.992431231275107,0.153461973288062,0.561320188866147,1.02511319404561,0,0.482561763430822,0,0.308419387605311,0.177561725313127,0.0821271560138091,0,0.232420756919918,0.604297247958111,1.40354529212299,0.184161977871793,0.574072240823034,0.728364672026868,0.262248829918848,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,0.769350375349168,0.656029291399411,2.60302715731442,0.721287081534056,0.0915694648183434,0.082509499920588,0,0,0,0.870036464629098,0.770243085573222,0.614014698904518,0.551346289938122,0.322260734604821,0.290033387828457,0,0.623224249527161,0.495854746082934,0.768760269460425,0.127612712494584,0.10115778085555,0.464845549297286,0.31481234683064,0,1.23213432070436,0.532306030317022,0.869932992075073,0.37064843820784,0,0,0,0.190630193923825,0,0.855877976067841,0.636406495851874,0,0,0.823611089208164,0.117812402345686,0.202182481573316,1.58510321173008,0.421258456238981,0,0.24371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| ||
|short_description=p9@RARA | |short_description=p9@RARA | ||
}} | }} |
Latest revision as of 01:21, 20 September 2015
Short description: | p9@RARA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_RARA_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 33bp_to_X58685_5end |
EntrezGene: | RARA |
HGNC: | 9864 |
UniProt: | P10276 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.34e-26 | 76 |
bone element | 7.04e-24 | 82 |
hematopoietic system | 9.00e-24 | 98 |
blood island | 9.00e-24 | 98 |
skeletal element | 3.95e-22 | 90 |
hemolymphoid system | 1.69e-20 | 108 |
skeletal system | 4.31e-20 | 100 |
immune system | 8.13e-20 | 93 |
lateral plate mesoderm | 1.63e-14 | 203 |
musculoskeletal system | 3.31e-12 | 167 |
mesoderm | 3.44e-10 | 315 |
mesoderm-derived structure | 3.44e-10 | 315 |
presumptive mesoderm | 3.44e-10 | 315 |
connective tissue | 8.70e-09 | 371 |