FFCP PHASE1:Hg19::chr17:38498594..38498661,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5914 | |EntrezGene=5914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9864 | |HGNC=9864 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000394081_5end | |association_with_transcript=0bp_to_ENST00000394081_5end | ||
|cluster_id=chr17:38498594..38498661,+ | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_2_at_RARA_5end | |description=CAGE_peak_2_at_RARA_5end | ||
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|ontology_enrichment_celltype=CL:0002057!1.30e-24!42;CL:0000860!1.49e-20!45;CL:0000766!6.45e-18!76;CL:0000557!1.31e-14!71;CL:0002009!2.03e-13!65;CL:0002194!2.02e-12!63;CL:0000576!2.02e-12!63;CL:0000040!2.02e-12!63;CL:0000559!2.02e-12!63;CL:0000839!2.56e-12!70;CL:0000222!9.50e-12!119;CL:0000213!1.03e-07!57;CL:0000215!1.03e-07!57;CL:0000183!2.07e-07!59;CL:0000094!6.56e-07!8;CL:0000115!6.76e-07!35;CL:0002393!9.78e-07!9;CL:0002397!9.78e-07!9 | |ontology_enrichment_celltype=CL:0002057!1.30e-24!42;CL:0000860!1.49e-20!45;CL:0000766!6.45e-18!76;CL:0000557!1.31e-14!71;CL:0002009!2.03e-13!65;CL:0002194!2.02e-12!63;CL:0000576!2.02e-12!63;CL:0000040!2.02e-12!63;CL:0000559!2.02e-12!63;CL:0000839!2.56e-12!70;CL:0000222!9.50e-12!119;CL:0000213!1.03e-07!57;CL:0000215!1.03e-07!57;CL:0000183!2.07e-07!59;CL:0000094!6.56e-07!8;CL:0000115!6.76e-07!35;CL:0002393!9.78e-07!9;CL:0002397!9.78e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.92e-18;33!CL:0002057;2.92e-18;33!CL:0000576;2.34e-13;48!CL:0000473;2.06e-12;39!CL:0000234;2.06e-12;39!CL:0000766;1.79e-10;69!CL:0000094;3.88e-07;8 | |ontology_enrichment_celltype_v019=CL:0000860;2.92e-18;33!CL:0002057;2.92e-18;33!CL:0000576;2.34e-13;48!CL:0000473;2.06e-12;39!CL:0000234;2.06e-12;39!CL:0000766;1.79e-10;69!CL:0000094;3.88e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.61e-25,42;CL:0002057,1.61e-25,42;CL:0000766,4.43e-21,72;CL:0000473,6.31e-21,48;CL:0000234,6.31e-21,48;CL:0000557,2.10e-17,67;CL:0002009,3.57e-16,61;CL:0002194,4.62e-15,59;CL:0000576,4.62e-15,59;CL:0000040,4.62e-15,59;CL:0000559,4.62e-15,59;CL:0000839,8.55e-15,66;CL:0000222,1.86e-12,121;CL:0000048,2.67e-08,427;CL:0000763,5.03e-08,108;CL:0000049,5.03e-08,108;CL:0000213,1.01e-07,58;CL:0000215,1.01e-07,58;CL:0000723,1.31e-07,433;CL:0000034,3.27e-07,441;CL:0000115,3.97e-07,36;CL:0000094,4.03e-07,8;CL:0002393,6.11e-07,9;CL:0002397,6.11e-07,9;CL:0000187,9.06e-07,55 | |||
|ontology_enrichment_development_v019=CL:0002057;1.73e-18;42 | |ontology_enrichment_development_v019=CL:0002057;1.73e-18;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003081!2.37e-30!216;UBERON:0001009!4.31e-20!113;UBERON:0004535!9.46e-20!110;UBERON:0000926!4.13e-16!448;UBERON:0004120!4.13e-16!448;UBERON:0006603!4.13e-16!448;UBERON:0002193!1.93e-15!112;UBERON:0003914!3.98e-15!118;UBERON:0002204!1.89e-14!167;UBERON:0002049!8.78e-14!79;UBERON:0007798!8.78e-14!79;UBERON:0002405!9.53e-14!115;UBERON:0002390!1.08e-13!102;UBERON:0003061!1.08e-13!102;UBERON:0004872!2.81e-12!84;UBERON:0000468!3.33e-12!659;UBERON:0002371!1.14e-11!80;UBERON:0000467!1.73e-11!625;UBERON:0000480!3.24e-11!626;UBERON:0000055!3.25e-11!69;UBERON:0001981!2.24e-10!60;UBERON:0007500!2.24e-10!60;UBERON:0004537!2.24e-10!60;UBERON:0006965!2.24e-10!60;UBERON:0000490!4.84e-09!138;UBERON:0001474!4.96e-09!86;UBERON:0002050!5.44e-09!605;UBERON:0005423!5.44e-09!605;UBERON:0000923!6.39e-09!604;UBERON:0005291!6.39e-09!604;UBERON:0006598!6.39e-09!604;UBERON:0002532!6.39e-09!604;UBERON:0000922!1.38e-08!612;UBERON:0001637!2.45e-07!42;UBERON:0003509!2.45e-07!42;UBERON:0004572!2.45e-07!42;UBERON:0004765!3.00e-07!101;UBERON:0001434!3.00e-07!101;UBERON:0002385!4.82e-07!63;UBERON:0001015!4.82e-07!63;UBERON:0000383!4.82e-07!63;UBERON:0005256!9.70e-07!143 | |ontology_enrichment_uberon=UBERON:0003081!2.37e-30!216;UBERON:0001009!4.31e-20!113;UBERON:0004535!9.46e-20!110;UBERON:0000926!4.13e-16!448;UBERON:0004120!4.13e-16!448;UBERON:0006603!4.13e-16!448;UBERON:0002193!1.93e-15!112;UBERON:0003914!3.98e-15!118;UBERON:0002204!1.89e-14!167;UBERON:0002049!8.78e-14!79;UBERON:0007798!8.78e-14!79;UBERON:0002405!9.53e-14!115;UBERON:0002390!1.08e-13!102;UBERON:0003061!1.08e-13!102;UBERON:0004872!2.81e-12!84;UBERON:0000468!3.33e-12!659;UBERON:0002371!1.14e-11!80;UBERON:0000467!1.73e-11!625;UBERON:0000480!3.24e-11!626;UBERON:0000055!3.25e-11!69;UBERON:0001981!2.24e-10!60;UBERON:0007500!2.24e-10!60;UBERON:0004537!2.24e-10!60;UBERON:0006965!2.24e-10!60;UBERON:0000490!4.84e-09!138;UBERON:0001474!4.96e-09!86;UBERON:0002050!5.44e-09!605;UBERON:0005423!5.44e-09!605;UBERON:0000923!6.39e-09!604;UBERON:0005291!6.39e-09!604;UBERON:0006598!6.39e-09!604;UBERON:0002532!6.39e-09!604;UBERON:0000922!1.38e-08!612;UBERON:0001637!2.45e-07!42;UBERON:0003509!2.45e-07!42;UBERON:0004572!2.45e-07!42;UBERON:0004765!3.00e-07!101;UBERON:0001434!3.00e-07!101;UBERON:0002385!4.82e-07!63;UBERON:0001015!4.82e-07!63;UBERON:0000383!4.82e-07!63;UBERON:0005256!9.70e-07!143 | ||
|ontology_enrichment_uberon_v019=UBERON:0001009;6.46e-07;112!UBERON:0004535;8.44e-07;109 | |ontology_enrichment_uberon_v019=UBERON:0001009;6.46e-07;112!UBERON:0004535;8.44e-07;109 | ||
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| ||
|short_description=p2@RARA | |short_description=p2@RARA | ||
}} | }} |
Latest revision as of 01:18, 20 September 2015
Short description: | p2@RARA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RARA_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000394081_5end |
EntrezGene: | RARA |
HGNC: | 9864 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.61e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.61e-25 | 42 |
myeloid leukocyte | 4.43e-21 | 72 |
defensive cell | 6.31e-21 | 48 |
phagocyte | 6.31e-21 | 48 |
granulocyte monocyte progenitor cell | 2.10e-17 | 67 |
macrophage dendritic cell progenitor | 3.57e-16 | 61 |
monopoietic cell | 4.62e-15 | 59 |
monocyte | 4.62e-15 | 59 |
monoblast | 4.62e-15 | 59 |
promonocyte | 4.62e-15 | 59 |
myeloid lineage restricted progenitor cell | 8.55e-15 | 66 |
mesodermal cell | 1.86e-12 | 121 |
multi fate stem cell | 2.67e-08 | 427 |
myeloid cell | 5.03e-08 | 108 |
common myeloid progenitor | 5.03e-08 | 108 |
lining cell | 1.01e-07 | 58 |
barrier cell | 1.01e-07 | 58 |
somatic stem cell | 1.31e-07 | 433 |
stem cell | 3.27e-07 | 441 |
endothelial cell | 3.97e-07 | 36 |
granulocyte | 4.03e-07 | 8 |
intermediate monocyte | 6.11e-07 | 9 |
CD14-positive, CD16-positive monocyte | 6.11e-07 | 9 |
muscle cell | 9.06e-07 | 55 |