FFCP PHASE1:Hg19::chr17:38498236..38498251,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5914 | |EntrezGene=5914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9864 | |HGNC=9864 | ||
|TSSclassifier=strong | |||
|UniProt=F1D8N9,P10276 | |UniProt=F1D8N9,P10276 | ||
|association_with_transcript=-19bp_to_NM_001024809_5end | |association_with_transcript=-19bp_to_NM_001024809_5end | ||
|cluster_id=chr17:38498236..38498251,+ | |||
|coexpression_cluster_id=C104 | |||
|description=CAGE_peak_24_at_RARA_5end | |description=CAGE_peak_24_at_RARA_5end | ||
|id=chr17:38498236..38498251,+ | |id=chr17:38498236..38498251,+ | ||
|ontology_enrichment_celltype=CL:0002057!4.15e-07!42 | |ontology_enrichment_celltype=CL:0002057!4.15e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000771;2.02e-11;2!CL:0000650;3.18e-11;2!CL:1000500;3.18e-11;2!CL:1000618;3.18e-11;2!CL:1001318;3.18e-11;2!CL:0002363;3.18e-11;2!CL:0002173;3.18e-11;2!CL:0000094;5.83e-11;8!CL:0000081;3.19e-08;11!CL:0002615;6.56e-08;3!CL:0002567;6.56e-08;3!CL:0000775;6.56e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000771,2.02e-11,2;CL:0002363,3.70e-11,2;CL:0000008,3.70e-11,2;CL:0000650,4.09e-11,2;CL:1000500,4.09e-11,2;CL:1000618,4.09e-11,2;CL:1001318,4.09e-11,2;CL:0002173,4.09e-11,2;CL:0000094,5.15e-11,8;CL:0000081,2.92e-08,11;CL:0000775,5.54e-08,3;CL:0002567,5.93e-08,3;CL:0002615,8.29e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000008;3.18e-11;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.16e-08!115;UBERON:0003056!1.53e-07!61;UBERON:0002780!1.54e-07!41;UBERON:0001890!1.54e-07!41;UBERON:0006240!1.54e-07!41;UBERON:0001869!1.63e-07!32;UBERON:0003080!3.04e-07!42;UBERON:0002020!4.86e-07!34;UBERON:0003528!4.86e-07!34;UBERON:0001893!7.74e-07!34;UBERON:0003075!8.41e-07!86;UBERON:0007284!8.41e-07!86;UBERON:0002346!9.23e-07!90 | |ontology_enrichment_uberon=UBERON:0007023!7.16e-08!115;UBERON:0003056!1.53e-07!61;UBERON:0002780!1.54e-07!41;UBERON:0001890!1.54e-07!41;UBERON:0006240!1.54e-07!41;UBERON:0001869!1.63e-07!32;UBERON:0003080!3.04e-07!42;UBERON:0002020!4.86e-07!34;UBERON:0003528!4.86e-07!34;UBERON:0001893!7.74e-07!34;UBERON:0003075!8.41e-07!86;UBERON:0007284!8.41e-07!86;UBERON:0002346!9.23e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0003891;1.04e-20;4!UBERON:0003566;3.18e-11;2!UBERON:0003567;3.18e-11;2!UBERON:0003838;3.18e-11;2!UBERON:0003586;3.18e-11;2!UBERON:0005169;3.18e-11;2!UBERON:0002321;3.18e-11;2!UBERON:0001777;3.18e-11;2!UBERON:0005215;3.18e-11;2!UBERON:0002303;3.18e-11;2!UBERON:0002319;3.18e-11;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003891,1.56e-20,4;UBERON:0003566,3.70e-11,2;UBERON:0001777,3.70e-11,2;UBERON:0003567,4.09e-11,2;UBERON:0003838,4.09e-11,2;UBERON:0003586,4.09e-11,2;UBERON:0005169,4.09e-11,2;UBERON:0002321,4.09e-11,2;UBERON:0005215,4.09e-11,2;UBERON:0002303,4.09e-11,2;UBERON:0002319,4.09e-11,2 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0.218441372130172,0,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0.286235987131057,0.136874425072884,0,0,0,0,0.786728553697808,0,0,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0.257575567634187,0.145398238779565,0,0.242584061187816,0,0,0,0.28769239232215,0.256160706529101,0,0,0,0,0.564727018627814,0.545812300115692,0.224723484445085,0,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0.637812899895131,0.209658645508376,0.336985893439485,0.150176892841506,0,0.570025487482497,0.59675003159727,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0.205601498999509,0,0.32592226663359,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0.12786256184353,0,0,0.144846518960824,0,0,0.189069634328136,0.443458794925128,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367663080345869,0,0,0.22452937262617,0,0,0,0.183201743930407,3.9534125230819,0,0,0,0.12663051166458,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0.144366447761074,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0,7.92659743793288,0.25248486685276,0,0,1.17217447210047,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.385029108839245,0,0,0,0.167516265334349,0,1.49801404789436,0,0,0.24538298343828,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0.270946437543853,1.00337954770971,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0.290033387828457,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0.211107635297664,0,0,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0.717873024576814,0,0,0,0.0671834724867263,0,0,0,0.164831716762333,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0.315222829196793,0.209818352539992,0,0,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0.082092520749339,0,0.113312091520126,0,0,0.387848869084652,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0,0,0,0,0.303298235083296,0,0,0,0.144921028610825,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0.449803112163605,0,0,0,0.521745061811734,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0.212574920101683,0,0,0.318004350653419,0,0,0.352675943690684,0,0.0642292250964595,0,0.159633859057151,0.41023272848151,0.252071696221718,0.276629009856872,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0.327543835020193,0,0.135075169236789,0,0.206686796501184,0,0,0,0.496211178389294,0,0,0,0,0.606965604236632,0.227662191351298,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0.235479278551542,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0.173858272302579,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0.22589216407792,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0.375935671919414,0.322289439867886,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.303114792872958,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0.12729431655633,0,0,0,0,0.286888821570705,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0.214100523890983,0.140954404095971,1.0007329835313,0,0,0,0,0,0,0,0.218441372130172,0,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0.286235987131057,0.136874425072884,0,0,0,0,0.786728553697808,0,0,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0.257575567634187,0.145398238779565,0,0.242584061187816,0,0,0,0.28769239232215,0.256160706529101,0,0,0,0,0.564727018627814,0.545812300115692,0.224723484445085,0,0,0,0.329851300186716,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0.637812899895131,0.209658645508376,0.336985893439485,0.150176892841506,0,0.570025487482497,0.59675003159727,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0.205601498999509,0,0.32592226663359,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0.144824403882799,0,0.670700859703636,0.12786256184353,0,0,0.144846518960824,0,0,0.189069634328136,0.443458794925128,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367663080345869,0,0,0.22452937262617,0,0,0,0.183201743930407,3.9534125230819,0,0,0,0.12663051166458,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,1.03993478527958,0,0,0,0.144366447761074,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0.492663237895943,0.088048434013226,0,7.92659743793288,0.25248486685276,0,0,1.17217447210047,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.215627574859517,0.385029108839245,0,0,0,0.167516265334349,0,1.49801404789436,0,0,0.24538298343828,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0.270946437543853,1.00337954770971,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0.290033387828457,0,0,0,0.192190067365106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0.211107635297664,0,0,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0.108647371922008,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0.717873024576814,0,0,0,0.0671834724867263,0,0,0,0.164831716762333,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0.315222829196793,0.209818352539992,0,0,0,0,0,0,0,0.864221491201268,0.326587360109409,0,0.082092520749339,0,0.113312091520126,0,0,0.387848869084652,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0.1251909307065,0,0,0,0,0,0.303298235083296,0,0,0,0.144921028610825,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0.449803112163605,0,0,0,0.521745061811734,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0.212574920101683,0,0,0.318004350653419,0,0,0.352675943690684,0,0.0642292250964595,0,0.159633859057151,0.41023272848151,0.252071696221718,0.276629009856872,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0.327543835020193,0,0.135075169236789,0,0.206686796501184,0,0,0,0.496211178389294,0,0,0,0,0.606965604236632,0.227662191351298,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0.235479278551542,0.157115589916002,0,0,0,0,0.142953088353313,0,0,0.173858272302579,0,0,0,0,0,0,0,0.846774100381858,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0.22589216407792,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0.375935671919414,0.322289439867886,0,0,0,0,0,0,0,0,0.203974470572744,0,0,0,0,0,0,0,0.126698501011437,0,0,0,0,0.303114792872958,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0.12729431655633,0,0,0,0,0.286888821570705,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p24@RARA | |short_description=p24@RARA | ||
}} | }} |
Latest revision as of 01:16, 20 September 2015
Short description: | p24@RARA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_24_at_RARA_5end |
Coexpression cluster: | C104_Mast_Basophils_immature_CD14_CD34_eye_Natural |
Association with transcript: | -19bp_to_NM_001024809_5end |
EntrezGene: | RARA |
HGNC: | 9864 |
UniProt: | F1D8N9P10276 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eosinophil | 2.02e-11 | 2 |
keratocyte | 3.70e-11 | 2 |
migratory cranial neural crest cell | 3.70e-11 | 2 |
mesangial cell | 4.09e-11 | 2 |
kidney interstitial cell | 4.09e-11 | 2 |
juxtaglomerular complex cell | 4.09e-11 | 2 |
renal interstitial pericyte | 4.09e-11 | 2 |
extraglomerular mesangial cell | 4.09e-11 | 2 |
granulocyte | 5.15e-11 | 8 |
blood cell | 2.92e-08 | 11 |
neutrophil | 5.54e-08 | 3 |
light melanocyte | 5.93e-08 | 3 |
adipocyte of omentum tissue | 8.29e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
stroma | 1.56e-20 | 4 |
head connective tissue | 3.70e-11 | 2 |
substantia propria of cornea | 3.70e-11 | 2 |
abdomen connective tissue | 4.09e-11 | 2 |
abdominal segment connective tissue | 4.09e-11 | 2 |
trunk connective tissue | 4.09e-11 | 2 |
interstitial tissue | 4.09e-11 | 2 |
extraglomerular mesangium | 4.09e-11 | 2 |
kidney interstitium | 4.09e-11 | 2 |
juxtaglomerular apparatus | 4.09e-11 | 2 |
mesangium | 4.09e-11 | 2 |