FFCP PHASE1:Hg19::chr5:125759230..125759241,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=65983 | |EntrezGene=65983 | ||
| Line 8: | Line 8: | ||
|UniProt=D6RFH3,D6R9P9 | |UniProt=D6RFH3,D6R9P9 | ||
|association_with_transcript=66bp_to_ENST00000505720,ENST00000513978,ENST00000514099_5end | |association_with_transcript=66bp_to_ENST00000505720,ENST00000513978,ENST00000514099_5end | ||
|cluster_id=chr5:125759230..125759241,+ | |||
|coexpression_cluster_id=C1274 | |coexpression_cluster_id=C1274 | ||
|description=CAGE_peak_6_at_GRAMD3_5end | |description=CAGE_peak_6_at_GRAMD3_5end | ||
Latest revision as of 01:13, 20 September 2015
| Short description: | p6@GRAMD3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_GRAMD3_5end |
| Coexpression cluster: | C1274_Preadipocyte_Olfactory_Adipocyte_amniotic_serous_spindle_mesodermal |
| Association with transcript: | 66bp_to_ENST00000505720, ENST00000513978, ENST00000514099_5end |
| EntrezGene: | GRAMD3 |
| HGNC: | 24911 |
| UniProt: | D6RFH3D6R9P9 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@GRAMD3 |
|---|
0
5
10
15
20
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| fibroblast | 2.04e-10 | 76 |
| skin fibroblast | 2.60e-08 | 23 |
Showing 1 to 2 of 2 entries
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 4.04e-26 | 56 |
| neural rod | 4.04e-26 | 56 |
| future spinal cord | 4.04e-26 | 56 |
| neural keel | 4.04e-26 | 56 |
| regional part of nervous system | 8.40e-23 | 53 |
| regional part of brain | 8.40e-23 | 53 |
| adult organism | 8.42e-22 | 114 |
| central nervous system | 1.72e-18 | 81 |
| neural plate | 2.53e-18 | 82 |
| presumptive neural plate | 2.53e-18 | 82 |
Showing 1 to 10 of 53 entries
