FFCP PHASE1:Hg19::chr14:45553296..45553340,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55015 | |EntrezGene=55015 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20314 | |HGNC=20314 | ||
|TSSclassifier=strong | |||
|UniProt=Q86UA1,F8WB90,G3V5M7 | |UniProt=Q86UA1,F8WB90,G3V5M7 | ||
|association_with_transcript=0bp_to_ENST00000355765,ENST00000424478,ENST00000477626,ENST00000553605,ENST00000556782,NM_017922,uc001wvy.3,uc001wvz.3,uc010and.2_5end | |association_with_transcript=0bp_to_ENST00000355765,ENST00000424478,ENST00000477626,ENST00000553605,ENST00000556782,NM_017922,uc001wvy.3,uc001wvz.3,uc010and.2_5end | ||
|cluster_id=chr14:45553296..45553340,+ | |||
|coexpression_cluster_id=C2295 | |||
|description=CAGE_peak_1_at_PRPF39_5end | |description=CAGE_peak_1_at_PRPF39_5end | ||
|id=chr14:45553296..45553340,+ | |id=chr14:45553296..45553340,+ | ||
|ontology_enrichment_celltype=CL:0000838!1.07e-14!52;CL:0000542!2.28e-14!53;CL:0000051!2.28e-14!53;CL:0000791!3.01e-09!18;CL:0000789!3.01e-09!18;CL:0002420!3.01e-09!18;CL:0002419!3.01e-09!18;CL:0000790!3.01e-09!18;CL:0000084!1.06e-07!25;CL:0000827!1.06e-07!25;CL:0000945!2.94e-07!24;CL:0000826!2.94e-07!24;CL:0000625!4.24e-07!11 | |ontology_enrichment_celltype=CL:0000838!1.07e-14!52;CL:0000542!2.28e-14!53;CL:0000051!2.28e-14!53;CL:0000791!3.01e-09!18;CL:0000789!3.01e-09!18;CL:0002420!3.01e-09!18;CL:0002419!3.01e-09!18;CL:0000790!3.01e-09!18;CL:0000084!1.06e-07!25;CL:0000827!1.06e-07!25;CL:0000945!2.94e-07!24;CL:0000826!2.94e-07!24;CL:0000625!4.24e-07!11 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.74e-09;18!CL:0000789;2.74e-09;18!CL:0002419;2.74e-09;18!CL:0000542;1.27e-08;53!CL:0000084;1.09e-07;25!CL:0000945;2.46e-07;24!CL:0000625;4.11e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.07e-14,52;CL:0000542,2.28e-14,53;CL:0000051,2.28e-14,53;CL:0000791,3.01e-09,18;CL:0000789,3.01e-09,18;CL:0002420,3.01e-09,18;CL:0002419,3.01e-09,18;CL:0000790,3.01e-09,18;CL:0000084,1.06e-07,25;CL:0000827,1.06e-07,25;CL:0000945,2.94e-07,24;CL:0000826,2.94e-07,24;CL:0000625,4.24e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;2.74e-09;18!CL:0000051;1.27e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.99e-18!57;UBERON:0005068!3.99e-18!57;UBERON:0006241!3.99e-18!57;UBERON:0007135!3.99e-18!57;UBERON:0002780!3.94e-16!41;UBERON:0001890!3.94e-16!41;UBERON:0006240!3.94e-16!41;UBERON:0003080!4.12e-16!42;UBERON:0000073!1.26e-15!94;UBERON:0001016!1.26e-15!94;UBERON:0001017!4.78e-15!82;UBERON:0002616!7.81e-15!59;UBERON:0005743!7.18e-14!86;UBERON:0002020!8.48e-14!34;UBERON:0003528!8.48e-14!34;UBERON:0000955!1.29e-13!69;UBERON:0006238!1.29e-13!69;UBERON:0001893!3.11e-13!34;UBERON:0002791!3.35e-13!33;UBERON:0007023!5.02e-13!115;UBERON:0001869!1.57e-12!32;UBERON:0002346!7.12e-11!90;UBERON:0000956!1.50e-09!25;UBERON:0000203!1.50e-09!25;UBERON:0003075!2.49e-09!86;UBERON:0007284!2.49e-09!86;UBERON:0002619!2.68e-09!22;UBERON:0001950!2.39e-08!20;UBERON:0003056!6.70e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;3.40e-12;41!UBERON:0001890;3.40e-12;41!UBERON:0002791;6.52e-12;32!UBERON:0003528;8.45e-12;34!UBERON:0002020;8.45e-12;34!UBERON:0001869;1.47e-11;32!UBERON:0001893;3.47e-11;34!UBERON:0000073;2.32e-10;53!UBERON:0002616;2.32e-10;53!UBERON:0000956;1.67e-09;25!UBERON:0000203;1.67e-09;25!UBERON:0002619;3.00e-09;22!UBERON:0001950;2.72e-08;20!UBERON:0001016;1.75e-07;83!UBERON:0001017;3.78e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,4.12e-18,56;UBERON:0005068,4.12e-18,56;UBERON:0006241,4.12e-18,56;UBERON:0007135,4.12e-18,56;UBERON:0000073,6.42e-17,53;UBERON:0002616,6.42e-17,53;UBERON:0001016,9.39e-17,89;UBERON:0002780,3.94e-16,41;UBERON:0001890,3.94e-16,41;UBERON:0003080,3.94e-16,41;UBERON:0006240,3.94e-16,41;UBERON:0001017,5.61e-15,81;UBERON:0003528,8.48e-14,34;UBERON:0002020,8.48e-14,34;UBERON:0000955,1.49e-13,68;UBERON:0006238,1.49e-13,68;UBERON:0001893,3.11e-13,34;UBERON:0002791,5.97e-13,32;UBERON:0007023,1.34e-12,114;UBERON:0001869,1.57e-12,32;UBERON:0002346,7.32e-12,86;UBERON:0003075,3.09e-10,82;UBERON:0007284,3.09e-10,82;UBERON:0000956,1.50e-09,25;UBERON:0000203,1.50e-09,25;UBERON:0002619,2.68e-09,22;UBERON:0001950,2.39e-08,20;UBERON:0003056,2.84e-08,61 | |||
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|short_description=p1@PRPF39 | |short_description=p1@PRPF39 | ||
}} | }} |
Latest revision as of 01:12, 20 September 2015
Short description: | p1@PRPF39 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PRPF39_5end |
Coexpression cluster: | C2295_CD4_CD8_cerebellum_Small_pituitary_Mast_cord |
Association with transcript: | 0bp_to_ENST00000355765, ENST00000424478, ENST00000477626, ENST00000553605, ENST00000556782, NM_017922, uc001wvy.3, uc001wvz.3, uc010and.2_5end |
EntrezGene: | PRPF39 |
HGNC: | 20314 |
UniProt: | Q86UA1F8WB90G3V5M7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.07e-14 | 52 |
lymphocyte | 2.28e-14 | 53 |
common lymphoid progenitor | 2.28e-14 | 53 |
mature alpha-beta T cell | 3.01e-09 | 18 |
alpha-beta T cell | 3.01e-09 | 18 |
immature T cell | 3.01e-09 | 18 |
mature T cell | 3.01e-09 | 18 |
immature alpha-beta T cell | 3.01e-09 | 18 |
T cell | 1.06e-07 | 25 |
pro-T cell | 1.06e-07 | 25 |
lymphocyte of B lineage | 2.94e-07 | 24 |
pro-B cell | 2.94e-07 | 24 |
CD8-positive, alpha-beta T cell | 4.24e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
neural tube | 4.12e-18 | 56 |
neural rod | 4.12e-18 | 56 |
future spinal cord | 4.12e-18 | 56 |
neural keel | 4.12e-18 | 56 |
regional part of nervous system | 6.42e-17 | 53 |
regional part of brain | 6.42e-17 | 53 |
nervous system | 9.39e-17 | 89 |
regional part of forebrain | 3.94e-16 | 41 |
forebrain | 3.94e-16 | 41 |
anterior neural tube | 3.94e-16 | 41 |
future forebrain | 3.94e-16 | 41 |
central nervous system | 5.61e-15 | 81 |
brain grey matter | 8.48e-14 | 34 |
gray matter | 8.48e-14 | 34 |
brain | 1.49e-13 | 68 |
future brain | 1.49e-13 | 68 |
telencephalon | 3.11e-13 | 34 |
regional part of telencephalon | 5.97e-13 | 32 |
adult organism | 1.34e-12 | 114 |
cerebral hemisphere | 1.57e-12 | 32 |
neurectoderm | 7.32e-12 | 86 |
neural plate | 3.09e-10 | 82 |
presumptive neural plate | 3.09e-10 | 82 |
cerebral cortex | 1.50e-09 | 25 |
pallium | 1.50e-09 | 25 |
regional part of cerebral cortex | 2.68e-09 | 22 |
neocortex | 2.39e-08 | 20 |
pre-chordal neural plate | 2.84e-08 | 61 |