FFCP PHASE1:Hg19::chr5:125758878..125758893,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65983 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24911 | |||
|TSSclassifier=strong | |||
|UniProt=B7Z3R1,B7Z1F2,Q96HH9 | |||
|association_with_transcript=9bp_to_ENST00000542322,ENST00000544396,NM_001146320,NM_001146321,NM_023927,uc003ktu.2,uc011cwv.1,uc011cww.1,uc011cwx.1_5end | |||
|cluster_id=chr5:125758878..125758893,+ | |||
|description=CAGE_peak_11_at_GRAMD3_5end | |||
|id=chr5:125758878..125758893,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002580;1.33e-11;3!CL:0002579;1.84e-11;3!CL:0002334;2.92e-10;12!CL:0000623;5.14e-10;3!CL:0000197;7.02e-10;6!CL:0000098;7.02e-10;6!CL:0002167;7.02e-10;6!CL:0002617;2.86e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,1.37e-11,3;CL:0002579,1.80e-11,3;CL:0000623,1.07e-10,3;CL:0000825,1.07e-10,3;CL:0002334,2.92e-10,12;CL:0000197,7.01e-10,6;CL:0000098,7.01e-10,6;CL:0002167,7.01e-10,6;CL:0002617,2.79e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.42e-14!57;UBERON:0005068!2.42e-14!57;UBERON:0006241!2.42e-14!57;UBERON:0007135!2.42e-14!57;UBERON:0007023!8.93e-14!115;UBERON:0002616!5.11e-12!59;UBERON:0002780!5.80e-12!41;UBERON:0001890!5.80e-12!41;UBERON:0006240!5.80e-12!41;UBERON:0003075!1.32e-11!86;UBERON:0007284!1.32e-11!86;UBERON:0001893!2.01e-11!34;UBERON:0003080!2.05e-11!42;UBERON:0002020!2.11e-11!34;UBERON:0003528!2.11e-11!34;UBERON:0002791!6.28e-11!33;UBERON:0002346!8.28e-11!90;UBERON:0001017!1.26e-10!82;UBERON:0005743!2.17e-10!86;UBERON:0000955!4.04e-10!69;UBERON:0006238!4.04e-10!69;UBERON:0001869!4.34e-10!32;UBERON:0000073!2.22e-08!94;UBERON:0001016!2.22e-08!94;UBERON:0003056!5.33e-08!61;UBERON:0002308!1.24e-07!9;UBERON:0000125!1.24e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.47e-14;6!UBERON:0002358;1.47e-14;6!UBERON:0003684;1.47e-14;6!UBERON:0001178;1.47e-14;6!UBERON:0004457;1.43e-09;9!UBERON:0000042;1.43e-09;9!UBERON:0000310;7.32e-09;10!UBERON:0001443;5.15e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.59e-14,6;UBERON:0002358,2.59e-14,6;UBERON:0003684,2.59e-14,6;UBERON:0001178,2.59e-14,6;UBERON:0001049,5.19e-10,56;UBERON:0005068,5.19e-10,56;UBERON:0006241,5.19e-10,56;UBERON:0007135,5.19e-10,56;UBERON:0000310,7.32e-09,10;UBERON:0001443,5.15e-08,11;UBERON:0000073,6.28e-08,53;UBERON:0002616,6.28e-08,53;UBERON:0004457,5.87e-07,12;UBERON:0000042,5.87e-07,12;UBERON:0001893,6.78e-07,34;UBERON:0003528,8.38e-07,34;UBERON:0002020,8.38e-07,34;UBERON:0001017,9.30e-07,81 | |||
|phase1_expression=10.9007027562334,5.1384125733836,10.4306259031019,1.0007329835313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.251085279189606,0.152826811495903,0.164201178899891,0,0,1.15148819429164,0.309632246632152,0,0,0,0,0,0,0.553995408531877,0.601633342410425,0.434021741431704,0,0,0,0.290796477559129,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0.689491361473237,0.645484683583826,0,0,0.545812300115692,0,1.53041946185451,0.320929027076094,0,0,0.199463657621632,0,3.19230162491442,0.56738522469114,0.622822248995575,0,0.521482918420201,0,2.42159801053347,1.84138817993782,0.316462387440884,0,0.425208599930087,0,0.112328631146495,0,0,0,0,0,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0,0,0,0,0,1.180258620683,0.393010762749165,0.822405995998037,1.17030546773475,0.977766799900771,0.473447805734733,1.94826728407911,0.668462741311041,0.294605907474837,1.32920336750173,1.08321545506006,0,0.520237390239513,0,0,0,0.444859689486181,0.802622484269139,0,0,0,1.37450978193052,0,0,0,0,0,0,0,0.236777252044017,0,2.01606743224732,2.13952156626806,1.30341963494519,0,0,0,0,0,0,0,0.486634870302636,0.189069634328136,0.221729397462564,0.263504357079378,0.261958150995425,0,0,0,0,0.132957960518865,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.976248230192678,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,0.379891534993739,0.397227542439656,0,0.354668382198357,0,0,0.24666754841716,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0.741800787835671,0,0,0,0,0.277064115484183,0.438977620880838,0.30648779579902,0.300476117813194,0.113432183160021,0.179389635688862,0.213557388818567,0.847727604638247,0,0.103052529238439,0.257640540045629,0.37223371266318,2.36286865137773,0.292311015483596,0.252433774244115,0.184099797284599,0,0,0.201504196455281,0.67824236924195,0,0,0,0,0,0,0,0,0,0,0,0,1.85747171212792,0.721879481669586,0.118306800039844,0.168584690078102,0.241011029883482,0.441175890929576,0,0,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0.721832238805369,0,1.14152491340759,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0.492663237895943,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0.387815147273333,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0.239624855491583,0,0,0.579125226670317,0.61642896765115,1.07436577943937,0,1.77327684181734,1.94064817373566,1.92514554419623,0,0,0,0,0,0,0,0,0.12269149171914,0,0,3.95144636908534,7.49401752948079,9.46214490203608,14.8769597040746,0,0,0,0,0.184369168541703,0.260650843404249,0,0,0.206768026122887,0.862856803274467,0.106727557803444,0.303127571446259,0,0.30239029332968,6.4508030032882,10.5888761568763,9.26178311629143,4.99742682097234,7.67560873600055,7.88184213603677,0,0.154209693802656,0.355123450626254,0,0,0,0.120859449591622,0,0.276242966807689,0.229628896329213,0.182091168006717,0.131124414959424,0.451199612907412,0.308061348417659,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,0.356128142586949,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0.744316738719335,0,0.38126038784765,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0.487426979262569,0,0,0,1.13008116620243,0,0.66343897524122,0,0.578775534266688,0,0,0,0,0,0.0982490410131212,0.35667105148125,0,0.422215270595328,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0,0.111443384277478,0,0,0.296964680832639,0,0,1.40669416410513,0.222617410045812,0,0,0,0,0,0.102268682502155,0,1.86623752597084,0.269605053441981,0,0,0.0986434056369336,0,0,1.93866549219044,0.834912883456661,0,0,0,0,0,0,0,0,0,0,0.885741385813839,1.20596438625408,0,0.331737779793674,0.295547618953547,0.219385397153973,0,0,0.307801034015188,0.683652335082007,0,0,0,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0.889563386041866,0,0.208843899010911,1.55022605855557,0,0.937057782901357,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.174118413160805,0.17472666824203,0.687944129886466,0.19351266257817,0.219267951258557,0.164230914106418,0.193978032976839,0.264768380074501,0,0,0,0.379864775735272,0,0.160317640503067,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,1.23214841002794,0,0,0,0.558564802544508,0,0.717873024576814,0.399358000997982,0.429226048136571,0.446342914883745,0.0671834724867263,1.08089965062721,0,0,0,0,0,0.423366660328922,0.795229689809303,1.36203406111576,0.160753148465019,0.137539436597234,0,0.674921674654501,0.77380195455795,0.546746009922222,0,0.236417121897595,0.472091293214983,0.844802692155252,0,0.191915197319445,0,0,0,0,0,0,0,0,1.19271615249795,0,0,0,1.0342636508924,0.66116300871345,0,0,0.213574825135389,0,0,1.48849806543585,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0.610131324509816,1.001527445652,0,1.5530067215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| |||
|short_description=p11@GRAMD3 | |||
}} |
Latest revision as of 01:07, 20 September 2015
Short description: | p11@GRAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_GRAMD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 9bp_to_ENST00000542322, ENST00000544396, NM_001146320, NM_001146321, NM_023927, uc003ktu.2, uc011cwv.1, uc011cww.1, uc011cwx.1_5end |
EntrezGene: | GRAMD3 |
HGNC: | 24911 |
UniProt: | B7Z3R1B7Z1F2Q96HH9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 1.37e-11 | 3 |
omentum preadipocyte | 1.80e-11 | 3 |
natural killer cell | 1.07e-10 | 3 |
pro-NK cell | 1.07e-10 | 3 |
preadipocyte | 2.92e-10 | 12 |
receptor cell | 7.01e-10 | 6 |
sensory epithelial cell | 7.01e-10 | 6 |
olfactory epithelial cell | 7.01e-10 | 6 |
adipocyte of breast | 2.79e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.59e-14 | 6 |
peritoneum | 2.59e-14 | 6 |
abdominal cavity | 2.59e-14 | 6 |
visceral peritoneum | 2.59e-14 | 6 |
neural tube | 5.19e-10 | 56 |
neural rod | 5.19e-10 | 56 |
future spinal cord | 5.19e-10 | 56 |
neural keel | 5.19e-10 | 56 |
breast | 7.32e-09 | 10 |
chest | 5.15e-08 | 11 |
regional part of nervous system | 6.28e-08 | 53 |
regional part of brain | 6.28e-08 | 53 |
cavity lining | 5.87e-07 | 12 |
serous membrane | 5.87e-07 | 12 |
telencephalon | 6.78e-07 | 34 |
brain grey matter | 8.38e-07 | 34 |
gray matter | 8.38e-07 | 34 |
central nervous system | 9.30e-07 | 81 |