FFCP PHASE1:Hg19::chr17:38172022..38172056,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1440 | |EntrezGene=1440 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2438 | |HGNC=2438 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=322bp_to_ENST00000479880_5end | |association_with_transcript=322bp_to_ENST00000479880_5end | ||
|cluster_id=chr17:38172022..38172056,+ | |||
|description=CAGE_peak_3_at_CSF3_5end | |description=CAGE_peak_3_at_CSF3_5end | ||
|id=chr17:38172022..38172056,+ | |id=chr17:38172022..38172056,+ | ||
|ontology_enrichment_celltype=CL:0002139!2.85e-19!24;CL:0000222!3.61e-17!119;CL:0000115!8.56e-16!35;CL:0000071!2.38e-14!18;CL:0002546!2.38e-14!18;CL:0002078!3.39e-12!44;CL:0000680!1.26e-11!57;CL:0000056!1.26e-11!57;CL:0000355!1.26e-11!57;CL:0000188!1.27e-09!9;CL:0000187!3.35e-09!54;CL:1000413!6.59e-09!9;CL:0000183!9.64e-09!59;CL:0002543!1.24e-08!6;CL:0000220!2.67e-08!246;CL:0002321!4.24e-08!248;CL:0000213!7.81e-08!57;CL:0000215!7.81e-08!57;CL:0000393!1.33e-07!60;CL:0000211!1.33e-07!60;CL:0000515!2.99e-07!4 | |ontology_enrichment_celltype=CL:0002139!2.85e-19!24;CL:0000222!3.61e-17!119;CL:0000115!8.56e-16!35;CL:0000071!2.38e-14!18;CL:0002546!2.38e-14!18;CL:0002078!3.39e-12!44;CL:0000680!1.26e-11!57;CL:0000056!1.26e-11!57;CL:0000355!1.26e-11!57;CL:0000188!1.27e-09!9;CL:0000187!3.35e-09!54;CL:1000413!6.59e-09!9;CL:0000183!9.64e-09!59;CL:0002543!1.24e-08!6;CL:0000220!2.67e-08!246;CL:0002321!4.24e-08!248;CL:0000213!7.81e-08!57;CL:0000215!7.81e-08!57;CL:0000393!1.33e-07!60;CL:0000211!1.33e-07!60;CL:0000515!2.99e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000056;2.92e-16;4!CL:0000515;1.88e-12;3!CL:0000115;3.04e-12;36!CL:0002139;1.65e-11;24!CL:0002138;1.02e-10;6!CL:0000680;2.59e-09;7!CL:0000317;2.68e-08;2!CL:1000448;2.68e-08;2!CL:0002308;2.68e-08;2!CL:0002140;2.68e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000515,1.57e-16,4;CL:0000115,8.30e-13,36;CL:0002139,1.82e-11,24;CL:0005020,1.45e-10,6;CL:0002138,1.45e-10,6;CL:0005022,1.45e-10,6;CL:0000222,4.34e-10,121;CL:0002078,9.73e-10,45;CL:0000317,3.01e-08,2;CL:1000448,3.01e-08,2;CL:0002308,3.01e-08,2;CL:0002140,3.01e-08,2;CL:0000213,5.19e-07,58;CL:0000215,5.19e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000515;2.92e-16;4!CL:0005022;1.02e-10;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!2.29e-21!69;UBERON:0002049!4.21e-18!79;UBERON:0007798!4.21e-18!79;UBERON:0001981!6.19e-16!60;UBERON:0007500!6.19e-16!60;UBERON:0004537!6.19e-16!60;UBERON:0006965!6.19e-16!60;UBERON:0000486!6.69e-16!82;UBERON:0004290!8.41e-15!70;UBERON:0004872!1.87e-14!84;UBERON:0001986!2.38e-14!18;UBERON:0004638!2.38e-14!18;UBERON:0004852!2.38e-14!18;UBERON:0000914!3.31e-14!83;UBERON:0002329!3.31e-14!83;UBERON:0003077!3.31e-14!83;UBERON:0003059!3.31e-14!83;UBERON:0007282!3.31e-14!83;UBERON:0009618!3.31e-14!83;UBERON:0007285!3.31e-14!83;UBERON:0002385!4.75e-14!63;UBERON:0001015!4.75e-14!63;UBERON:0000383!4.75e-14!63;UBERON:0001134!8.09e-14!61;UBERON:0002036!8.09e-14!61;UBERON:0003082!8.09e-14!61;UBERON:0000490!4.99e-13!138;UBERON:0004535!1.63e-12!110;UBERON:0000487!2.01e-12!22;UBERON:0001009!7.66e-12!113;UBERON:0006914!8.77e-12!25;UBERON:0001637!3.50e-11!42;UBERON:0003509!3.50e-11!42;UBERON:0004572!3.50e-11!42;UBERON:0002465!1.73e-10!10;UBERON:0000483!4.96e-09!309;UBERON:0003915!6.59e-09!9;UBERON:0004700!6.59e-09!9;UBERON:0001917!6.59e-09!9;UBERON:0000119!9.49e-09!312;UBERON:0001473!1.09e-08!8;UBERON:0004536!1.09e-08!8;UBERON:0006558!1.09e-08!8;UBERON:0000926!1.24e-08!448;UBERON:0004120!1.24e-08!448;UBERON:0006603!1.24e-08!448;UBERON:0003104!1.46e-08!238;UBERON:0009142!1.46e-08!238;UBERON:0004573!2.12e-08!33;UBERON:0004571!2.12e-08!33;UBERON:0000468!3.48e-08!659;UBERON:0003914!6.65e-08!118;UBERON:0000467!1.21e-07!625;UBERON:0000480!1.41e-07!626;UBERON:0000477!2.44e-07!286;UBERON:0005256!4.00e-07!143;UBERON:0001638!4.35e-07!9;UBERON:0003920!4.35e-07!9;UBERON:0004582!4.35e-07!9;UBERON:0004111!6.33e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0000007;4.01e-09;2!UBERON:0001134;1.34e-08;16!UBERON:0002036;1.34e-08;16!UBERON:0002419;2.68e-08;2!UBERON:0007771;2.68e-08;2!UBERON:0003297;2.68e-08;2!UBERON:0001821;2.68e-08;2!UBERON:0003487;2.68e-08;2!UBERON:0001820;2.68e-08;2!UBERON:0001473;4.80e-08;8!UBERON:0004536;4.80e-08;8!UBERON:0006558;4.80e-08;8!UBERON:0000055;2.95e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,8.86e-11,68;UBERON:0000007,4.02e-09,2;UBERON:0002049,6.15e-09,78;UBERON:0007798,6.15e-09,78;UBERON:0002419,3.01e-08,2;UBERON:0007771,3.01e-08,2;UBERON:0003297,3.01e-08,2;UBERON:0001821,3.01e-08,2;UBERON:0003487,3.01e-08,2;UBERON:0001820,3.01e-08,2;UBERON:0005089,3.01e-08,2;UBERON:0005088,3.01e-08,2;UBERON:0001473,6.23e-08,8;UBERON:0004536,6.23e-08,8;UBERON:0006558,6.23e-08,8;UBERON:0007503,7.91e-08,78;UBERON:0000486,3.43e-07,83;UBERON:0004535,4.04e-07,109;UBERON:0007500,6.50e-07,59;UBERON:0001981,6.50e-07,59;UBERON:0004537,6.50e-07,59;UBERON:0006965,6.50e-07,59;UBERON:0004872,6.70e-07,83;UBERON:0001009,7.92e-07,112 | |||
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|short_description=p3@CSF3 | |short_description=p3@CSF3 | ||
}} | }} |
Latest revision as of 23:36, 19 September 2015
Short description: | p3@CSF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CSF3_5end |
Coexpression cluster: | NA |
Association with transcript: | 322bp_to_ENST00000479880_5end |
EntrezGene: | CSF3 |
HGNC: | 2438 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skeletal muscle myoblast | 1.57e-16 | 4 |
endothelial cell | 8.30e-13 | 36 |
endothelial cell of vascular tree | 1.82e-11 | 24 |
lymphangioblast | 1.45e-10 | 6 |
endothelial cell of lymphatic vessel | 1.45e-10 | 6 |
vascular lymphangioblast | 1.45e-10 | 6 |
mesodermal cell | 4.34e-10 | 121 |
meso-epithelial cell | 9.73e-10 | 45 |
sebum secreting cell | 3.01e-08 | 2 |
epithelial cell of sweat gland | 3.01e-08 | 2 |
epithelial cell of skin gland | 3.01e-08 | 2 |
acinar cell of sebaceous gland | 3.01e-08 | 2 |
lining cell | 5.19e-07 | 58 |
barrier cell | 5.19e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
vessel | 8.86e-11 | 68 |
pituitary gland | 4.02e-09 | 2 |
vasculature | 6.15e-09 | 78 |
vascular system | 6.15e-09 | 78 |
skin gland | 3.01e-08 | 2 |
epidermis gland | 3.01e-08 | 2 |
gland of integumental system | 3.01e-08 | 2 |
sebaceous gland | 3.01e-08 | 2 |
skin sebaceous gland | 3.01e-08 | 2 |
sweat gland | 3.01e-08 | 2 |
sweat gland placode | 3.01e-08 | 2 |
sebaceous gland placode | 3.01e-08 | 2 |
lymphatic vessel | 6.23e-08 | 8 |
lymph vasculature | 6.23e-08 | 8 |
lymphatic part of lymphoid system | 6.23e-08 | 8 |
epithelial vesicle | 7.91e-08 | 78 |
multilaminar epithelium | 3.43e-07 | 83 |
cardiovascular system | 4.04e-07 | 109 |
epithelial tube open at both ends | 6.50e-07 | 59 |
blood vessel | 6.50e-07 | 59 |
blood vasculature | 6.50e-07 | 59 |
vascular cord | 6.50e-07 | 59 |
splanchnic layer of lateral plate mesoderm | 6.70e-07 | 83 |
circulatory system | 7.92e-07 | 112 |