FFCP PHASE1:Hg19::chr5:121414004..121414025,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4015 | |EntrezGene=4015 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6664 | |HGNC=6664 | ||
|TSSclassifier=strong | |||
|UniProt=P28300 | |UniProt=P28300 | ||
|association_with_transcript=-24bp_to_ENST00000231004_5end | |association_with_transcript=-24bp_to_ENST00000231004_5end | ||
|cluster_id=chr5:121414004..121414025,- | |||
|coexpression_cluster_id=C421 | |coexpression_cluster_id=C421 | ||
|description=CAGE_peak_3_at_LOX_5end | |description=CAGE_peak_3_at_LOX_5end | ||
|id=chr5:121414004..121414025,- | |id=chr5:121414004..121414025,- | ||
|ontology_enrichment_celltype=CL:0000359;1.32e-13;32!CL:0000192;2.37e-12;43!CL:0000057;2.87e-11;73!CL:0002620;3.16e-11;23!CL:0000187;2.48e-10;55!CL:0000134;4.09e-09;55!CL:0002334;9.64e-09;12!CL:0000048;1.09e-08;58!CL:0002320;1.53e-08;188!CL:0000723;1.75e-08;61!CL:0000393;2.02e-08;61!CL:0000211;2.02e-08;61 | |ontology_enrichment_celltype=CL:0000055!7.65e-46!180;CL:0000057!1.42e-25!75;CL:0000222!1.17e-24!119;CL:0000680!3.46e-18!57;CL:0000056!3.46e-18!57;CL:0000355!3.46e-18!57;CL:0000187!3.78e-17!54;CL:0000183!6.07e-17!59;CL:0000192!8.84e-16!42;CL:0000514!8.84e-16!42;CL:0000220!5.04e-15!246;CL:0000393!8.20e-15!60;CL:0000211!8.20e-15!60;CL:0002321!1.51e-14!248;CL:0000359!1.52e-13!32;CL:0000144!3.01e-12!625;CL:0002620!4.96e-11!23;CL:0002371!1.77e-10!591;CL:0000548!5.06e-09!679;CL:0000004!5.06e-09!679;CL:0000255!5.06e-09!679;CL:0000012!8.03e-09!682;CL:0002334!3.23e-08!12;CL:0000213!2.23e-07!57;CL:0000215!2.23e-07!57 | ||
| | |ontology_enrichment_celltype_v019=CL:0000359;1.32e-13;32!CL:0000192;2.37e-12;43!CL:0000057;2.87e-11;73!CL:0002620;3.16e-11;23!CL:0000187;2.48e-10;55!CL:0000134;4.09e-09;55!CL:0002334;9.64e-09;12!CL:0000048;1.09e-08;58!CL:0002320;1.53e-08;188!CL:0000723;1.75e-08;61!CL:0000393;2.02e-08;61!CL:0000211;2.02e-08;61 | ||
|ontology_enrichment_disease=DOID:2394;4.61e-07;14 | |ontology_enrichment_celltype_v019_2=CL:0000057,4.38e-28,76;CL:0000222,9.86e-26,121;CL:0000680,1.21e-19,58;CL:0000056,1.21e-19,58;CL:0000355,1.21e-19,58;CL:0000187,1.59e-18,55;CL:0000192,4.97e-17,43;CL:0000514,4.97e-17,43;CL:0000393,5.12e-16,61;CL:0000211,5.12e-16,61;CL:0000359,1.80e-14,32;CL:0002321,4.21e-12,250;CL:0002620,3.08e-11,23;CL:0000048,4.34e-11,427;CL:0000723,5.23e-10,433;CL:0000034,1.93e-09,441;CL:0002334,9.85e-09,12;CL:0000213,1.85e-07,58;CL:0000215,1.85e-07,58 | ||
|ontology_enrichment_uberon=UBERON:0004573;3.44e-12;33!UBERON:0004571;3.44e-12;33!UBERON:0001637;1.45e-11;42!UBERON:0003509;1.45e-11;42!UBERON:0004572;1.45e-11;42!UBERON:0007500;3.20e-10;56!UBERON:0001981;3.20e-10;56!UBERON:0004537;3.20e-10;56!UBERON:0002049;8.46e-10;75!UBERON:0007798;8.46e-10;75!UBERON:0000055;1.69e-09;65!UBERON:0002384;9.12e-09;198!UBERON:0000947;2.35e-08;21!UBERON:0010191;2.35e-08;21!UBERON:0003914;1.69e-07;74 | |ontology_enrichment_development_v019=CL:0000514;2.37e-12;43!CL:0000355;1.39e-10;58!CL:0000222;2.15e-07;121 | ||
|ontology_enrichment_disease=DOID:2394!4.29e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;4.61e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.64e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!1.14e-21!79;UBERON:0007798!1.14e-21!79;UBERON:0000914!1.93e-20!83;UBERON:0002329!1.93e-20!83;UBERON:0003077!1.93e-20!83;UBERON:0003059!1.93e-20!83;UBERON:0007282!1.93e-20!83;UBERON:0009618!1.93e-20!83;UBERON:0007285!1.93e-20!83;UBERON:0004290!2.04e-19!70;UBERON:0004872!4.33e-19!84;UBERON:0000055!7.33e-18!69;UBERON:0001134!2.59e-17!61;UBERON:0002036!2.59e-17!61;UBERON:0003082!2.59e-17!61;UBERON:0005256!3.35e-17!143;UBERON:0002385!9.18e-17!63;UBERON:0001015!9.18e-17!63;UBERON:0000383!9.18e-17!63;UBERON:0001981!1.07e-16!60;UBERON:0007500!1.07e-16!60;UBERON:0004537!1.07e-16!60;UBERON:0006965!1.07e-16!60;UBERON:0000486!1.42e-16!82;UBERON:0003914!4.74e-16!118;UBERON:0004535!2.14e-15!110;UBERON:0001637!5.34e-15!42;UBERON:0003509!5.34e-15!42;UBERON:0004572!5.34e-15!42;UBERON:0001009!7.29e-15!113;UBERON:0000490!4.04e-14!138;UBERON:0004573!1.24e-12!33;UBERON:0004571!1.24e-12!33;UBERON:0002100!1.64e-11!216;UBERON:0000475!3.32e-10!365;UBERON:0000119!4.43e-09!312;UBERON:0000468!1.14e-08!659;UBERON:0000483!1.55e-08!309;UBERON:0003104!1.86e-08!238;UBERON:0009142!1.86e-08!238;UBERON:0000477!3.10e-08!286;UBERON:0000481!6.78e-08!347;UBERON:0000947!7.23e-08!21;UBERON:0010191!7.23e-08!21;UBERON:0002199!3.19e-07!45;UBERON:0002416!3.19e-07!45;UBERON:0003102!8.79e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.44e-12;33!UBERON:0004571;3.44e-12;33!UBERON:0001637;1.45e-11;42!UBERON:0003509;1.45e-11;42!UBERON:0004572;1.45e-11;42!UBERON:0007500;3.20e-10;56!UBERON:0001981;3.20e-10;56!UBERON:0004537;3.20e-10;56!UBERON:0002049;8.46e-10;75!UBERON:0007798;8.46e-10;75!UBERON:0000055;1.69e-09;65!UBERON:0002384;9.12e-09;198!UBERON:0000947;2.35e-08;21!UBERON:0010191;2.35e-08;21!UBERON:0003914;1.69e-07;74 | |||
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|phase1_expression=103.556676184217,59.5199456416933,65.4028435005306,99.0725653695991,40.6734595928832,135.212471235557,27.8629865985142,24.0053551902196,3.13422753839806,17.2013755551056,9.76921635161399,2.83973783769224,5.80287352102598,7.79728023648294,12.2617029019329,36.9778830548476,28.9293373451509,30.6730237962697,27.8121695310589,64.6385554903136,35.9041216589885,76.4829520406534,20.036519099174,11.9080749813409,21.5933340103061,0,0,0,0,0,0.928896739896456,0,0,0,0,0,1.17440175733939,1.66198622559563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.526768169550154,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0664806419773,10.0605128955545,80.9370016469547,90.3597880961416,63.1685767401221,58.0834541032903,3.1811437882044,62.2892633987374,14.7474314775946,30.8203862472964,23.9788964942234,0.458426764241994,0,0.370784442784429,0,0,0,0,0,0,9.54059555360184,10.3228151412735,13.1913390610886,10.7408508965562,16.7799774483962,8.25354125820202,7.31482382878837,31.7852613778275,27.7497684895634,71.6302111316394,16.9188313185842,10.6438094800592,29.5315089633285,4.77962004449629,5.67099363517232,7.67977663243086,7.4094692966636,6.53146586803269,6.13266549863533,7.59412527654503,8.24407847686833,0,0,2.61656431285521,193.819061161174,115.86691817309,233.172567412078,483.893379203249,85.8297484920024,37.5653992095346,49.1045380356643,43.4134885214201,14.3157076283892,11.7198284700629,11.769257024169,34.2067786477545,41.4846665625599,5.85803579584492,18.7296046098192,15.9732110032446,17.7843929856643,19.494126774865,36.5832854271977,39.0453242632251,5.51216262388212,5.52754427902956,3.40975077880026,58.2121400068206,58.8495291682965,28.2150022200788,41.6798522253418,3.36672227908132,4.62938523526267,16.9009110445352,80.7718822420742,73.8635587875637,67.9076026257817,37.772916992287,452.061881935932,107.419366575739,93.4619684113668,397.320611215749,65.5414085956471,292.93729403188,153.546406473562,483.037862874504,128.909157828266,267.074933150273,97.9410921554065,27.479829659198,508.018726891275,106.998728317754,76.6413877243404,0.193260853163297,0.272746120590835,0,0,0.132529768321485,2.09149097165133,1.65857688024593,3.02785021050754,0,21.9029345261742,16.0810234548221,9.66944449467364,40.8643776668142,63.5253943869235,1.0647612003586,1.34867752062481,0.723033089650446,0.992645754591546,0.871517776369625,0.949082476444386,1.75280700608214,0.784885860501384,1.53898862778556,1.4763109092493,32.2556079747925,29.6333288158608,35.2820907325301,0,0,0.590789906681404,0,0.122988438543114,81.6662777020982,0.219500570817251,0,0,0.740707561268237,4.23550796903422,5.19967392639789,40.4127757670765,13.1001357621837,184.449058644476,7.07395594029262,8.33373922637899,8.18092854608773,0,0,0,0,0,0.93733833986777,0.671928512795438,1.13420077793909,2.05984602216551,2.03443756959773,4.60059214998253,0,0.088048434013226,0,0,0,0.063497894292169,0.381988425558278,0,5.13217338068116,2.98199728839638,0.901029173531752,0.571652865261156,24.6688385559794,40.1083263326618,25.3750468940487,129.788802620809,10.7296933755565,14.370146793452,41.7522843038247,31.2022310734098,10.0310875962235,26.9513350844229,10.9233093396601,90.7910259729237,22.7901074264406,17.2880470723961,12.0522388188682,77.8308367746175,7.91951872933429,44.0101490506996,33.1182714268112,79.1786090161892,0,0,0,168.695898266074,42.4989162586221,9.98458335285029,131.60620776083,11.7121503853719,33.3053391626206,0,0,0,0,4.06551398755941,3.90419561572865,3.09315525111078,3.18280904135263,1.91381625495949,0,0,0,15.827202431769,13.5046040686113,9.76554085319048,37.8506967986069,51.2091197847854,36.4292578728389,70.1677075806352,122.485062589182,31.8370505678379,26.9029985360513,113.58257734956,69.1384382031387,35.5353983174459,3.91602314925481,3.0882908142977,0,0,0,0.606255142892519,11.6504807657348,3.62868351995616,171.690603010594,185.075139785403,131.068264100245,127.114036061655,148.906809478411,186.268840684297,139.512982458292,74.0206530252747,96.7711402956543,106.51892134991,18.1739050214267,78.6744262173924,0,2.20557117333613,0.276242966807689,28.3591686966579,49.7108888658338,19.5375378289542,3.15839729035188,5.2370429231002,5.49044838423799,18.9980992049239,18.8937415718248,3.4120015221269,1.19065593693561,14.4663663788433,27.7609054842521,8.94123243894714,10.0337954770971,2.03901018436031,0.831076008928724,2.23874754722178,0,0,5.38545262744417,23.2890398446791,28.958677125123,1.03041011647722,0,0.082509499920588,0,0,281.196877227279,5.41356022435883,4.77550713055398,5.67963596486679,5.51346289938122,13.5349508534025,9.86113518616754,6.98858344812027,31.6954046902385,1.4875642382488,0.576570202095319,0.382838137483752,1.51736671283325,41.8360994367557,1593.5800996567,44.6103852902784,78.5485629449026,58.0213573045554,43.4966496037536,25.389418017237,62.5455755062502,33.1220948730104,24.0448362786232,33.9321745184408,18.16874318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| ||
|short_description=p3@LOX | |short_description=p3@LOX | ||
}} | }} |
Latest revision as of 23:24, 19 September 2015
Short description: | p3@LOX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LOX_5end |
Coexpression cluster: | C421_Smooth_Fibroblast_epithelioid_hepatic_Sertoli_Ewing_tenocyte |
Association with transcript: | -24bp_to_ENST00000231004_5end |
EntrezGene: | LOX |
HGNC: | 6664 |
UniProt: | P28300 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.38e-28 | 76 |
mesodermal cell | 9.86e-26 | 121 |
muscle precursor cell | 1.21e-19 | 58 |
myoblast | 1.21e-19 | 58 |
multi-potent skeletal muscle stem cell | 1.21e-19 | 58 |
muscle cell | 1.59e-18 | 55 |
smooth muscle cell | 4.97e-17 | 43 |
smooth muscle myoblast | 4.97e-17 | 43 |
electrically responsive cell | 5.12e-16 | 61 |
electrically active cell | 5.12e-16 | 61 |
vascular associated smooth muscle cell | 1.80e-14 | 32 |
embryonic cell | 4.21e-12 | 250 |
skin fibroblast | 3.08e-11 | 23 |
multi fate stem cell | 4.34e-11 | 427 |
somatic stem cell | 5.23e-10 | 433 |
stem cell | 1.93e-09 | 441 |
preadipocyte | 9.85e-09 | 12 |
lining cell | 1.85e-07 | 58 |
barrier cell | 1.85e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.64e-07 | 14 |