FFCP PHASE1:Hg19::chr19:55417530..55417537,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9437 | |EntrezGene=9437 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6731 | |HGNC=6731 | ||
|TSSclassifier=strong | |||
|UniProt=O76036,B0V3L5,B0V3L2,B0V3L4,B0V3L0 | |UniProt=O76036,B0V3L5,B0V3L2,B0V3L4,B0V3L0 | ||
|association_with_transcript=22bp_to_ENST00000291890,ENST00000338835,ENST00000350790,ENST00000357397,ENST00000447255,NM_001145457,NM_001145458,NM_001242356,NM_001242357,NM_004829,uc002qib.2,uc002qic.2,uc002qid.2,uc002qie.2,uc002qif.2,uc010esj.2_5end | |||
|cluster_id=chr19:55417530..55417537,+ | |||
|description=CAGE_peak_3_at_NCR1_5end | |||
|id=chr19:55417530..55417537,+ | |||
|ontology_enrichment_celltype=CL:0000080!3.22e-17!6;CL:0000988!1.24e-14!182;CL:0000623!2.14e-13!3;CL:0000825!2.14e-13!3;CL:0000767!2.52e-13!3;CL:0000738!1.34e-12!140;CL:0000037!3.29e-12!172;CL:0000566!3.29e-12!172;CL:0002087!1.11e-11!119;CL:0002032!8.40e-11!165;CL:0000837!8.40e-11!165;CL:0002031!9.03e-09!124;CL:0000625!2.99e-08!11;CL:0002057!2.00e-07!42;CL:0000791!4.71e-07!18;CL:0000789!4.71e-07!18;CL:0002420!4.71e-07!18;CL:0002419!4.71e-07!18;CL:0000790!4.71e-07!18;CL:0000766!5.77e-07!76;CL:0000860!8.29e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000767;2.72e-27;3!CL:0000623;2.72e-27;3!CL:0002127;4.22e-21;1!CL:0000911;4.22e-21;1!CL:0000814;4.22e-21;1!CL:0000094;6.94e-11;8!CL:0000081;3.62e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000767,3.56e-27,3;CL:0000623,4.07e-27,3;CL:0000825,4.07e-27,3;CL:0002127,2.82e-21,1;CL:0000914,2.82e-21,1;CL:0000911,2.82e-21,1;CL:0000814,2.82e-21,1;CL:0002042,2.82e-21,1;CL:0002039,2.82e-21,1;CL:0002040,2.82e-21,1;CL:0002041,2.82e-21,1;CL:0000893,2.47e-11,2;CL:0002489,2.47e-11,2;CL:0000809,2.47e-11,2;CL:0000808,2.47e-11,2;CL:0000894,2.47e-11,2;CL:0000806,2.47e-11,2;CL:0000807,2.47e-11,2;CL:0000805,2.47e-11,2;CL:0002425,2.47e-11,2;CL:0000094,7.67e-11,8;CL:0000081,3.90e-08,11;CL:0000988,9.13e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002425;3.02e-11;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.76e-25!15;UBERON:0000179!1.76e-25!15;UBERON:0000463!1.76e-25!15;UBERON:0002390!6.29e-18!102;UBERON:0003061!6.29e-18!102;UBERON:0002193!8.44e-16!112;UBERON:0004177!4.01e-09!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.25e-12;15!UBERON:0000179;1.25e-12;15!UBERON:0000463;1.25e-12;15!UBERON:0002331;5.57e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.06e-12,15;UBERON:0000179,1.06e-12,15;UBERON:0000463,1.06e-12,15;UBERON:0002331,4.75e-09,10;UBERON:0000358,4.75e-09,10;UBERON:0000307,4.75e-09,10;UBERON:0000091,4.75e-09,10;UBERON:0000087,4.75e-09,10;UBERON:0007010,4.75e-09,10;UBERON:0007806,4.75e-09,10;UBERON:0008780,4.75e-09,10;UBERON:0005728,4.75e-09,10 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,1.53531759238885,0.619264493264304,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612167784741805,0.320929027076094,0.639337125799041,0,0,0,0,0.56738522469114,0.622822248995575,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12101712596307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0.201606743224732,0.267440195783507,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68127715990291,1.37921532141349,1.50939302401662,0.898401253958239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,1.52927441428475,0.569647187174163,0.238231775457789,0,0,0.540031437238115,0.79312517629427,0,0,0,0,0,0,0,0.399158742865633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89318974933188,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824019371133798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0,0.0884575645033392,0,0.593042257361244,2.34771483998355,1.98401704060365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0.4226557275834,0,0.281951753939561,0.322289439867886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@NCR1 | |||
}} | }} |
Latest revision as of 23:21, 19 September 2015
Short description: | p3@NCR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NCR1_5end |
Coexpression cluster: | NA |
Association with transcript: | 22bp_to_ENST00000291890, ENST00000338835, ENST00000350790, ENST00000357397, ENST00000447255, NM_001145457, NM_001145458, NM_001242356, NM_001242357, NM_004829, uc002qib.2, uc002qic.2, uc002qid.2, uc002qie.2, uc002qif.2, uc010esj.2_5end |
EntrezGene: | NCR1 |
HGNC: | 6731 |
UniProt: | O76036B0V3L5B0V3L2B0V3L4B0V3L0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
basophil | 3.56e-27 | 3 |
natural killer cell | 4.07e-27 | 3 |
pro-NK cell | 4.07e-27 | 3 |
innate effector T cell | 2.82e-21 | 1 |
immature NK T cell | 2.82e-21 | 1 |
effector T cell | 2.82e-21 | 1 |
mature NK T cell | 2.82e-21 | 1 |
immature NK T cell stage IV | 2.82e-21 | 1 |
immature NK T cell stage I | 2.82e-21 | 1 |
immature NK T cell stage II | 2.82e-21 | 1 |
immature NK T cell stage III | 2.82e-21 | 1 |
thymocyte | 2.47e-11 | 2 |
double negative thymocyte | 2.47e-11 | 2 |
double-positive, alpha-beta thymocyte | 2.47e-11 | 2 |
DN4 thymocyte | 2.47e-11 | 2 |
DN1 thymic pro-T cell | 2.47e-11 | 2 |
DN2 thymocyte | 2.47e-11 | 2 |
DN3 thymocyte | 2.47e-11 | 2 |
immature single positive thymocyte | 2.47e-11 | 2 |
early T lineage precursor | 2.47e-11 | 2 |
granulocyte | 7.67e-11 | 8 |
blood cell | 3.90e-08 | 11 |
hematopoietic cell | 9.13e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
blood | 1.06e-12 | 15 |
haemolymphatic fluid | 1.06e-12 | 15 |
organism substance | 1.06e-12 | 15 |
umbilical cord | 4.75e-09 | 10 |
blastocyst | 4.75e-09 | 10 |
blastula | 4.75e-09 | 10 |
bilaminar disc | 4.75e-09 | 10 |
inner cell mass | 4.75e-09 | 10 |
cleaving embryo | 4.75e-09 | 10 |
connecting stalk | 4.75e-09 | 10 |
inner cell mass derived epiblast | 4.75e-09 | 10 |
extraembryonic mesoderm | 4.75e-09 | 10 |