FFCP PHASE1:Hg19::chr17:38074842..38074858,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55876 | |EntrezGene=55876 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23690 | |HGNC=23690 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000309481_5end | |association_with_transcript=0bp_to_ENST00000309481_5end | ||
|cluster_id=chr17:38074842..38074858,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_2_at_GSDMB_5end | |description=CAGE_peak_2_at_GSDMB_5end | ||
|id=chr17:38074842..38074858,- | |id=chr17:38074842..38074858,- | ||
|ontology_enrichment_celltype=CL:0000159!1.13e-07!2 | |ontology_enrichment_celltype=CL:0000159!1.13e-07!2 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0001045;1.22e-17;1!UBERON:0006242;1.22e-17;1 | |||
|ontology_enrichment_disease=DOID:3493!5.13e-08!2 | |ontology_enrichment_disease=DOID:3493!5.13e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:4929;1.03e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,9.46e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0005409!2.59e-19!35;UBERON:0000160!1.29e-16!27;UBERON:0004119!6.96e-12!169;UBERON:0000925!6.96e-12!169;UBERON:0006595!6.96e-12!169;UBERON:0001007!1.69e-11!155;UBERON:0001555!1.69e-11!155;UBERON:0007026!1.69e-11!155;UBERON:0004921!1.55e-09!129;UBERON:0004185!1.55e-09!129;UBERON:0002108!1.95e-08!14;UBERON:0000059!2.53e-08!11;UBERON:0003127!4.02e-08!2;UBERON:0001155!7.51e-07!9;UBERON:0000344!8.65e-07!12 | |ontology_enrichment_uberon=UBERON:0005409!2.59e-19!35;UBERON:0000160!1.29e-16!27;UBERON:0004119!6.96e-12!169;UBERON:0000925!6.96e-12!169;UBERON:0006595!6.96e-12!169;UBERON:0001007!1.69e-11!155;UBERON:0001555!1.69e-11!155;UBERON:0007026!1.69e-11!155;UBERON:0004921!1.55e-09!129;UBERON:0004185!1.55e-09!129;UBERON:0002108!1.95e-08!14;UBERON:0000059!2.53e-08!11;UBERON:0003127!4.02e-08!2;UBERON:0001155!7.51e-07!9;UBERON:0000344!8.65e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.42e-58;17!UBERON:0002108;8.04e-54;4!UBERON:0005409;1.33e-45;22!UBERON:0001155;1.24e-29;9!UBERON:0004921;1.61e-28;33!UBERON:0000059;2.46e-24;11!UBERON:0002114;2.94e-23;2!UBERON:0004913;4.44e-18;1!UBERON:0003703;4.44e-18;1!UBERON:0001174;4.44e-18;1!UBERON:0004914;4.44e-18;1!UBERON:0001154;1.22e-17;1!UBERON:0001153;1.22e-17;1!UBERON:0000997;1.22e-17;1!UBERON:0005056;1.22e-17;1!UBERON:0009854;1.22e-17;1!UBERON:0004176;1.22e-17;1!UBERON:0001555;1.67e-10;54!UBERON:0002294;2.04e-10;7!UBERON:0001173;2.04e-10;7!UBERON:0001007;4.90e-08;81!UBERON:0002110;9.64e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.09e-58,17;UBERON:0002108,7.03e-54,4;UBERON:0005409,2.37e-40,25;UBERON:0001155,1.15e-29,9;UBERON:0000059,2.31e-24,11;UBERON:0002114,2.63e-23,2;UBERON:0004913,3.75e-18,1;UBERON:0003703,3.75e-18,1;UBERON:0001174,3.75e-18,1;UBERON:0004914,3.75e-18,1;UBERON:0001154,8.72e-18,1;UBERON:0001153,8.72e-18,1;UBERON:0001045,8.72e-18,1;UBERON:0000997,1.03e-17,1;UBERON:0005056,1.03e-17,1;UBERON:0001007,1.60e-08,145;UBERON:0001555,1.60e-08,145;UBERON:0007026,1.60e-08,145;UBERON:0004921,2.08e-08,118;UBERON:0002294,2.65e-08,9;UBERON:0001173,2.65e-08,9;UBERON:0004912,2.65e-08,9;UBERON:0004119,1.18e-07,160;UBERON:0000925,1.18e-07,160;UBERON:0006595,1.18e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.493313713811028,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.383959833463255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30998378285754,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,1.38141957765574,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,3.00755719311353,2.4441205797345,0,0,0,0.067401132980677,0,0,0,0.586993856796269,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,1.37189356380129,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0.240476460754601,1.28071796843612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0.183428598521679,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,3.252833896775,0,0,0.206686796501184,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0.470958557103084,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.196300467230486,0.731507549893617,0,0,0,0,0,0,0,0,0,0.150962843566674,7.71741581079447,4.15263164957519,0,0,0,0,0,0,0,0,0,0.0999411559249289,0.178553938605658,0,0,0.730336388246517,0,0,0,0,0,3.1741610430924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0,0,0,0,0,0,0,0.573777643141411,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.493313713811028,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.383959833463255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860919069801795,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30998378285754,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,1.38141957765574,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98578579323551,3.00755719311353,2.4441205797345,0,0,0,0.067401132980677,0,0,0,0.586993856796269,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,1.37189356380129,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0.240476460754601,1.28071796843612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0.183428598521679,0,0,0,0,0.0752103283492573,0,0.781514011233092,0,0,3.252833896775,0,0,0.206686796501184,0,0,0,0,0,0.255524855279191,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0.470958557103084,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.196300467230486,0.731507549893617,0,0,0,0,0,0,0,0,0,0.150962843566674,7.71741581079447,4.15263164957519,0,0,0,0,0,0,0,0,0,0.0999411559249289,0.178553938605658,0,0,0.730336388246517,0,0,0,0,0,3.1741610430924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0,0,0,0,0,0,0,0.573777643141411,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@GSDMB | |short_description=p2@GSDMB | ||
}} | }} |
Latest revision as of 23:14, 19 September 2015
Short description: | p2@GSDMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GSDMB_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000309481_5end |
EntrezGene: | GSDMB |
HGNC: | 23690 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 2.09e-58 | 17 |
small intestine | 7.03e-54 | 4 |
gastrointestinal system | 2.37e-40 | 25 |
colon | 1.15e-29 | 9 |
large intestine | 2.31e-24 | 11 |
duodenum | 2.63e-23 | 2 |
hepatopancreatic ampulla | 3.75e-18 | 1 |
extrahepatic bile duct | 3.75e-18 | 1 |
common bile duct | 3.75e-18 | 1 |
duodenal papilla | 3.75e-18 | 1 |
vermiform appendix | 8.72e-18 | 1 |
caecum | 8.72e-18 | 1 |
midgut | 8.72e-18 | 1 |
mammalian vulva | 1.03e-17 | 1 |
external female genitalia | 1.03e-17 | 1 |
digestive system | 1.60e-08 | 145 |
digestive tract | 1.60e-08 | 145 |
primitive gut | 1.60e-08 | 145 |
subdivision of digestive tract | 2.08e-08 | 118 |
biliary system | 2.65e-08 | 9 |
biliary tree | 2.65e-08 | 9 |
biliary bud | 2.65e-08 | 9 |
endoderm-derived structure | 1.18e-07 | 160 |
endoderm | 1.18e-07 | 160 |
presumptive endoderm | 1.18e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 9.46e-10 | 2 |