FFCP PHASE1:Hg19::chr6:112575490..112575527,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3910 | |EntrezGene=3910 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6484 | |HGNC=6484 | ||
|TSSclassifier=strong | |||
|UniProt=E5RFQ2 | |UniProt=E5RFQ2 | ||
|association_with_transcript=159bp_to_ENST00000521398_5end | |association_with_transcript=159bp_to_ENST00000521398_5end | ||
|cluster_id=chr6:112575490..112575527,- | |||
|coexpression_cluster_id=C2836 | |||
|description=CAGE_peak_3_at_LAMA4_5end | |description=CAGE_peak_3_at_LAMA4_5end | ||
|id=chr6:112575490..112575527,- | |id=chr6:112575490..112575527,- | ||
|ontology_enrichment_celltype=CL:0000055!2.51e-23!180;CL:0000222!2.52e-15!119;CL:0000187!5.69e-13!54;CL:0000680!8.18e-13!57;CL:0000056!8.18e-13!57;CL:0000355!8.18e-13!57;CL:0000057!9.20e-13!75;CL:0000183!1.13e-11!59;CL:0000393!4.18e-11!60;CL:0000211!4.18e-11!60;CL:0000192!1.15e-09!42;CL:0000514!1.15e-09!42;CL:0000136!1.74e-09!15;CL:0002139!2.77e-09!24;CL:0002620!4.92e-08!23;CL:0000359!1.84e-07!32 | |ontology_enrichment_celltype=CL:0000055!2.51e-23!180;CL:0000222!2.52e-15!119;CL:0000187!5.69e-13!54;CL:0000680!8.18e-13!57;CL:0000056!8.18e-13!57;CL:0000355!8.18e-13!57;CL:0000057!9.20e-13!75;CL:0000183!1.13e-11!59;CL:0000393!4.18e-11!60;CL:0000211!4.18e-11!60;CL:0000192!1.15e-09!42;CL:0000514!1.15e-09!42;CL:0000136!1.74e-09!15;CL:0002139!2.77e-09!24;CL:0002620!4.92e-08!23;CL:0000359!1.84e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0002139;3.99e-10;24!CL:0000136;8.12e-10;13!CL:0000187;1.55e-07;55!CL:0002620;1.66e-07;23!CL:0000192;2.73e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.10e-16,121;CL:0000187,2.46e-13,55;CL:0000680,1.71e-12,58;CL:0000056,1.71e-12,58;CL:0000355,1.71e-12,58;CL:0000057,1.57e-11,76;CL:0000136,1.88e-10,15;CL:0000393,2.34e-10,61;CL:0000211,2.34e-10,61;CL:0002139,3.18e-10,24;CL:0000192,1.09e-09,43;CL:0000514,1.09e-09,43;CL:0002620,1.30e-07,23;CL:0000359,5.78e-07,32 | |||
|ontology_enrichment_development_v019=CL:0000514;2.73e-07;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!8.53e-18!79;UBERON:0007798!8.53e-18!79;UBERON:0004872!5.97e-16!84;UBERON:0000914!8.11e-16!83;UBERON:0002329!8.11e-16!83;UBERON:0003077!8.11e-16!83;UBERON:0003059!8.11e-16!83;UBERON:0007282!8.11e-16!83;UBERON:0009618!8.11e-16!83;UBERON:0007285!8.11e-16!83;UBERON:0000055!1.35e-15!69;UBERON:0004290!4.56e-15!70;UBERON:0000475!1.35e-14!365;UBERON:0002385!4.66e-14!63;UBERON:0001015!4.66e-14!63;UBERON:0000383!4.66e-14!63;UBERON:0001981!5.71e-14!60;UBERON:0007500!5.71e-14!60;UBERON:0004537!5.71e-14!60;UBERON:0006965!5.71e-14!60;UBERON:0001009!7.24e-14!113;UBERON:0004535!1.05e-13!110;UBERON:0001134!1.74e-13!61;UBERON:0002036!1.74e-13!61;UBERON:0003082!1.74e-13!61;UBERON:0000477!1.03e-12!286;UBERON:0000486!5.98e-12!82;UBERON:0004111!9.74e-12!241;UBERON:0000490!1.21e-11!138;UBERON:0000119!1.24e-11!312;UBERON:0001637!1.78e-11!42;UBERON:0003509!1.78e-11!42;UBERON:0004572!1.78e-11!42;UBERON:0000483!3.69e-11!309;UBERON:0000468!4.09e-11!659;UBERON:0004573!4.73e-11!33;UBERON:0004571!4.73e-11!33;UBERON:0000481!9.61e-11!347;UBERON:0005256!7.04e-10!143;UBERON:0003914!1.72e-09!118;UBERON:0000467!8.93e-09!625;UBERON:0000480!1.33e-08!626;UBERON:0002100!2.34e-08!216;UBERON:0000947!5.77e-08!21;UBERON:0010191!5.77e-08!21;UBERON:0000025!6.56e-08!194;UBERON:0003102!8.99e-08!95;UBERON:0002199!6.42e-07!45;UBERON:0002416!6.42e-07!45 | |ontology_enrichment_uberon=UBERON:0002049!8.53e-18!79;UBERON:0007798!8.53e-18!79;UBERON:0004872!5.97e-16!84;UBERON:0000914!8.11e-16!83;UBERON:0002329!8.11e-16!83;UBERON:0003077!8.11e-16!83;UBERON:0003059!8.11e-16!83;UBERON:0007282!8.11e-16!83;UBERON:0009618!8.11e-16!83;UBERON:0007285!8.11e-16!83;UBERON:0000055!1.35e-15!69;UBERON:0004290!4.56e-15!70;UBERON:0000475!1.35e-14!365;UBERON:0002385!4.66e-14!63;UBERON:0001015!4.66e-14!63;UBERON:0000383!4.66e-14!63;UBERON:0001981!5.71e-14!60;UBERON:0007500!5.71e-14!60;UBERON:0004537!5.71e-14!60;UBERON:0006965!5.71e-14!60;UBERON:0001009!7.24e-14!113;UBERON:0004535!1.05e-13!110;UBERON:0001134!1.74e-13!61;UBERON:0002036!1.74e-13!61;UBERON:0003082!1.74e-13!61;UBERON:0000477!1.03e-12!286;UBERON:0000486!5.98e-12!82;UBERON:0004111!9.74e-12!241;UBERON:0000490!1.21e-11!138;UBERON:0000119!1.24e-11!312;UBERON:0001637!1.78e-11!42;UBERON:0003509!1.78e-11!42;UBERON:0004572!1.78e-11!42;UBERON:0000483!3.69e-11!309;UBERON:0000468!4.09e-11!659;UBERON:0004573!4.73e-11!33;UBERON:0004571!4.73e-11!33;UBERON:0000481!9.61e-11!347;UBERON:0005256!7.04e-10!143;UBERON:0003914!1.72e-09!118;UBERON:0000467!8.93e-09!625;UBERON:0000480!1.33e-08!626;UBERON:0002100!2.34e-08!216;UBERON:0000947!5.77e-08!21;UBERON:0010191!5.77e-08!21;UBERON:0000025!6.56e-08!194;UBERON:0003102!8.99e-08!95;UBERON:0002199!6.42e-07!45;UBERON:0002416!6.42e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.60e-11;33!UBERON:0004571;1.60e-11;33!UBERON:0001637;7.19e-09;42!UBERON:0003509;7.19e-09;42!UBERON:0004572;7.19e-09;42!UBERON:0000947;2.28e-08;21!UBERON:0010191;2.28e-08;21!UBERON:0000055;2.52e-08;65!UBERON:0002385;6.95e-08;31!UBERON:0001015;6.95e-08;31!UBERON:0000383;6.95e-08;31!UBERON:0002049;4.87e-07;75!UBERON:0007798;4.87e-07;75!UBERON:0007500;7.78e-07;56!UBERON:0001981;7.78e-07;56!UBERON:0004537;7.78e-07;56 | |||
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| ||
|short_description=p3@LAMA4 | |short_description=p3@LAMA4 | ||
}} | }} |
Latest revision as of 22:11, 19 September 2015
Short description: | p3@LAMA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LAMA4_5end |
Coexpression cluster: | C2836_Fibroblast_Endothelial_mature_Cardiac_Smooth_mesenchymal_Adipocyte |
Association with transcript: | 159bp_to_ENST00000521398_5end |
EntrezGene: | LAMA4 |
HGNC: | 6484 |
UniProt: | E5RFQ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.10e-16 | 121 |
muscle cell | 2.46e-13 | 55 |
muscle precursor cell | 1.71e-12 | 58 |
myoblast | 1.71e-12 | 58 |
multi-potent skeletal muscle stem cell | 1.71e-12 | 58 |
fibroblast | 1.57e-11 | 76 |
fat cell | 1.88e-10 | 15 |
electrically responsive cell | 2.34e-10 | 61 |
electrically active cell | 2.34e-10 | 61 |
endothelial cell of vascular tree | 3.18e-10 | 24 |
smooth muscle cell | 1.09e-09 | 43 |
smooth muscle myoblast | 1.09e-09 | 43 |
skin fibroblast | 1.30e-07 | 23 |
vascular associated smooth muscle cell | 5.78e-07 | 32 |