FFCP PHASE1:Hg19::chr15:92396920..92396987,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=28232 | |EntrezGene=28232 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10952 | |HGNC=10952 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UIG8 | |UniProt=Q9UIG8 | ||
|association_with_transcript=0bp_to_ENST00000318445,ENST00000553653,NM_001145044,NM_013272,uc002bqx.2,uc002bqy.2_5end | |association_with_transcript=0bp_to_ENST00000318445,ENST00000553653,NM_001145044,NM_013272,uc002bqx.2,uc002bqy.2_5end | ||
|cluster_id=chr15:92396920..92396987,+ | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_1_at_SLCO3A1_5end | |description=CAGE_peak_1_at_SLCO3A1_5end | ||
|id=chr15:92396920..92396987,+ | |id=chr15:92396920..92396987,+ | ||
|ontology_enrichment_celltype=CL:0000766!2.65e-25!76;CL:0002057!1.00e-24!42;CL:0000860!1.81e-23!45;CL:0000557!3.63e-22!71;CL:0002009!2.88e-20!65;CL:0002194!4.57e-19!63;CL:0000576!4.57e-19!63;CL:0000040!4.57e-19!63;CL:0000559!4.57e-19!63;CL:0000839!5.57e-19!70;CL:0000738!4.48e-17!140;CL:0000763!5.56e-16!112;CL:0000049!5.56e-16!112;CL:0002031!5.90e-13!124;CL:0002087!2.66e-12!119;CL:0000037!8.13e-12!172;CL:0000566!8.13e-12!172;CL:0002032!1.39e-11!165;CL:0000837!1.39e-11!165;CL:0000988!2.13e-09!182;CL:0000791!5.87e-07!18;CL:0000789!5.87e-07!18;CL:0002420!5.87e-07!18;CL:0002419!5.87e-07!18;CL:0000790!5.87e-07!18 | |ontology_enrichment_celltype=CL:0000766!2.65e-25!76;CL:0002057!1.00e-24!42;CL:0000860!1.81e-23!45;CL:0000557!3.63e-22!71;CL:0002009!2.88e-20!65;CL:0002194!4.57e-19!63;CL:0000576!4.57e-19!63;CL:0000040!4.57e-19!63;CL:0000559!4.57e-19!63;CL:0000839!5.57e-19!70;CL:0000738!4.48e-17!140;CL:0000763!5.56e-16!112;CL:0000049!5.56e-16!112;CL:0002031!5.90e-13!124;CL:0002087!2.66e-12!119;CL:0000037!8.13e-12!172;CL:0000566!8.13e-12!172;CL:0002032!1.39e-11!165;CL:0000837!1.39e-11!165;CL:0000988!2.13e-09!182;CL:0000791!5.87e-07!18;CL:0000789!5.87e-07!18;CL:0002420!5.87e-07!18;CL:0002419!5.87e-07!18;CL:0000790!5.87e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.98e-19;33!CL:0002057;1.98e-19;33!CL:0000473;2.46e-15;39!CL:0000234;2.46e-15;39!CL:0000576;4.87e-14;48!CL:0000766;3.86e-12;69!CL:0000791;5.30e-07;18!CL:0000789;5.30e-07;18!CL:0002419;5.30e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.22e-26,72;CL:0000860,7.23e-25,42;CL:0002057,7.23e-25,42;CL:0000473,4.06e-23,48;CL:0000234,4.06e-23,48;CL:0000557,5.29e-23,67;CL:0002009,4.25e-21,61;CL:0002194,7.32e-20,59;CL:0000576,7.32e-20,59;CL:0000040,7.32e-20,59;CL:0000559,7.32e-20,59;CL:0000839,1.57e-19,66;CL:0000738,1.48e-17,136;CL:0000763,1.59e-16,108;CL:0000049,1.59e-16,108;CL:0002031,2.90e-13,120;CL:0002087,1.21e-12,115;CL:0000037,2.88e-12,168;CL:0002032,5.40e-12,161;CL:0000837,5.40e-12,161;CL:0000988,3.31e-10,177;CL:0000791,5.44e-07,18;CL:0000789,5.44e-07,18;CL:0002420,5.44e-07,18;CL:0002419,5.44e-07,18;CL:0000790,5.44e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002057;3.15e-18;42!CL:0000790;5.30e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.45e-24!115;UBERON:0002390!6.53e-24!102;UBERON:0003061!6.53e-24!102;UBERON:0002193!1.33e-19!112;UBERON:0002371!5.78e-19!80;UBERON:0001474!1.62e-15!86;UBERON:0004765!3.23e-14!101;UBERON:0001434!3.23e-14!101;UBERON:0001049!9.67e-13!57;UBERON:0005068!9.67e-13!57;UBERON:0006241!9.67e-13!57;UBERON:0007135!9.67e-13!57;UBERON:0002405!3.11e-10!115;UBERON:0003080!2.39e-09!42;UBERON:0003075!2.85e-09!86;UBERON:0007284!2.85e-09!86;UBERON:0002780!4.28e-09!41;UBERON:0001890!4.28e-09!41;UBERON:0006240!4.28e-09!41;UBERON:0002346!5.48e-09!90;UBERON:0002616!1.16e-08!59;UBERON:0002020!2.26e-08!34;UBERON:0003528!2.26e-08!34;UBERON:0001893!2.73e-08!34;UBERON:0002791!5.53e-08!33;UBERON:0000955!6.85e-08!69;UBERON:0006238!6.85e-08!69;UBERON:0001017!2.38e-07!82;UBERON:0001869!2.73e-07!32;UBERON:0002619!3.67e-07!22;UBERON:0005743!6.09e-07!86;UBERON:0000153!6.97e-07!129;UBERON:0007811!6.97e-07!129 | |ontology_enrichment_uberon=UBERON:0007023!1.45e-24!115;UBERON:0002390!6.53e-24!102;UBERON:0003061!6.53e-24!102;UBERON:0002193!1.33e-19!112;UBERON:0002371!5.78e-19!80;UBERON:0001474!1.62e-15!86;UBERON:0004765!3.23e-14!101;UBERON:0001434!3.23e-14!101;UBERON:0001049!9.67e-13!57;UBERON:0005068!9.67e-13!57;UBERON:0006241!9.67e-13!57;UBERON:0007135!9.67e-13!57;UBERON:0002405!3.11e-10!115;UBERON:0003080!2.39e-09!42;UBERON:0003075!2.85e-09!86;UBERON:0007284!2.85e-09!86;UBERON:0002780!4.28e-09!41;UBERON:0001890!4.28e-09!41;UBERON:0006240!4.28e-09!41;UBERON:0002346!5.48e-09!90;UBERON:0002616!1.16e-08!59;UBERON:0002020!2.26e-08!34;UBERON:0003528!2.26e-08!34;UBERON:0001893!2.73e-08!34;UBERON:0002791!5.53e-08!33;UBERON:0000955!6.85e-08!69;UBERON:0006238!6.85e-08!69;UBERON:0001017!2.38e-07!82;UBERON:0001869!2.73e-07!32;UBERON:0002619!3.67e-07!22;UBERON:0005743!6.09e-07!86;UBERON:0000153!6.97e-07!129;UBERON:0007811!6.97e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.15e-07;41!UBERON:0001890;5.15e-07;41!UBERON:0002619;5.87e-07;22!UBERON:0007023;6.28e-07;114!UBERON:0000073;7.53e-07;53!UBERON:0002616;7.53e-07;53!UBERON:0001893;8.68e-07;34 | |||
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| ||
|short_description=p1@SLCO3A1 | |short_description=p1@SLCO3A1 | ||
}} | }} |
Latest revision as of 22:06, 19 September 2015
Short description: | p1@SLCO3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLCO3A1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000318445, ENST00000553653, NM_001145044, NM_013272, uc002bqx.2, uc002bqy.2_5end |
EntrezGene: | SLCO3A1 |
HGNC: | 10952 |
UniProt: | Q9UIG8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.22e-26 | 72 |
classical monocyte | 7.23e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.23e-25 | 42 |
defensive cell | 4.06e-23 | 48 |
phagocyte | 4.06e-23 | 48 |
granulocyte monocyte progenitor cell | 5.29e-23 | 67 |
macrophage dendritic cell progenitor | 4.25e-21 | 61 |
monopoietic cell | 7.32e-20 | 59 |
monocyte | 7.32e-20 | 59 |
monoblast | 7.32e-20 | 59 |
promonocyte | 7.32e-20 | 59 |
myeloid lineage restricted progenitor cell | 1.57e-19 | 66 |
leukocyte | 1.48e-17 | 136 |
myeloid cell | 1.59e-16 | 108 |
common myeloid progenitor | 1.59e-16 | 108 |
hematopoietic lineage restricted progenitor cell | 2.90e-13 | 120 |
nongranular leukocyte | 1.21e-12 | 115 |
hematopoietic stem cell | 2.88e-12 | 168 |
hematopoietic oligopotent progenitor cell | 5.40e-12 | 161 |
hematopoietic multipotent progenitor cell | 5.40e-12 | 161 |
hematopoietic cell | 3.31e-10 | 177 |
mature alpha-beta T cell | 5.44e-07 | 18 |
alpha-beta T cell | 5.44e-07 | 18 |
immature T cell | 5.44e-07 | 18 |
mature T cell | 5.44e-07 | 18 |
immature alpha-beta T cell | 5.44e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.18e-24 | 98 |
blood island | 1.18e-24 | 98 |
adult organism | 8.18e-24 | 114 |
hemolymphoid system | 3.86e-20 | 108 |
bone marrow | 1.26e-19 | 76 |
bone element | 2.94e-16 | 82 |
immune system | 1.61e-15 | 93 |
skeletal element | 2.12e-14 | 90 |
skeletal system | 9.62e-14 | 100 |
neural tube | 2.99e-12 | 56 |
neural rod | 2.99e-12 | 56 |
future spinal cord | 2.99e-12 | 56 |
neural keel | 2.99e-12 | 56 |
regional part of nervous system | 4.07e-11 | 53 |
regional part of brain | 4.07e-11 | 53 |
regional part of forebrain | 7.42e-09 | 41 |
forebrain | 7.42e-09 | 41 |
anterior neural tube | 7.42e-09 | 41 |
future forebrain | 7.42e-09 | 41 |
neural plate | 1.26e-08 | 82 |
presumptive neural plate | 1.26e-08 | 82 |
neurectoderm | 2.51e-08 | 86 |
brain grey matter | 4.06e-08 | 34 |
gray matter | 4.06e-08 | 34 |
telencephalon | 4.89e-08 | 34 |
brain | 1.90e-07 | 68 |
future brain | 1.90e-07 | 68 |
regional part of telencephalon | 3.09e-07 | 32 |
regional part of cerebral cortex | 4.63e-07 | 22 |
cerebral hemisphere | 4.80e-07 | 32 |
central nervous system | 6.76e-07 | 81 |
ecto-epithelium | 7.63e-07 | 104 |