FFCP PHASE1:Hg19::chr6:111804393..111804436,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5980 | |EntrezGene=5980 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9968 | |HGNC=9968 | ||
|TSSclassifier=strong | |||
|UniProt=O60673,F5H5X8 | |UniProt=O60673,F5H5X8 | ||
|association_with_transcript=0bp_to_ENST00000368802,ENST00000368805,ENST00000543871,NM_002912,uc003pux.3,uc003puy.3_5end | |association_with_transcript=0bp_to_ENST00000368802,ENST00000368805,ENST00000543871,NM_002912,uc003pux.3,uc003puy.3_5end | ||
|cluster_id=chr6:111804393..111804436,- | |||
|coexpression_cluster_id=C1826 | |||
|description=CAGE_peak_2_at_REV3L_5end | |description=CAGE_peak_2_at_REV3L_5end | ||
|id=chr6:111804393..111804436,- | |id=chr6:111804393..111804436,- | ||
|ontology_enrichment_celltype=CL:0000037!5.59e-13!172;CL:0000566!5.59e-13!172;CL:0002032!1.06e-11!165;CL:0000837!1.06e-11!165;CL:0000988!1.93e-10!182;CL:0000738!8.64e-10!140;CL:0000838!9.10e-10!52;CL:0000542!2.20e-09!53;CL:0000051!2.20e-09!53;CL:0002031!3.98e-08!124;CL:0000791!2.23e-07!18;CL:0000789!2.23e-07!18;CL:0002420!2.23e-07!18;CL:0002419!2.23e-07!18;CL:0000790!2.23e-07!18;CL:0002087!6.82e-07!119 | |ontology_enrichment_celltype=CL:0000037!5.59e-13!172;CL:0000566!5.59e-13!172;CL:0002032!1.06e-11!165;CL:0000837!1.06e-11!165;CL:0000988!1.93e-10!182;CL:0000738!8.64e-10!140;CL:0000838!9.10e-10!52;CL:0000542!2.20e-09!53;CL:0000051!2.20e-09!53;CL:0002031!3.98e-08!124;CL:0000791!2.23e-07!18;CL:0000789!2.23e-07!18;CL:0002420!2.23e-07!18;CL:0002419!2.23e-07!18;CL:0000790!2.23e-07!18;CL:0002087!6.82e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.14e-07;18!CL:0000789;2.14e-07;18!CL:0002419;2.14e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.74e-13,168;CL:0002032,5.39e-12,161;CL:0000837,5.39e-12,161;CL:0000988,5.02e-11,177;CL:0000738,4.42e-10,136;CL:0000838,9.09e-10,52;CL:0000542,2.19e-09,53;CL:0000051,2.19e-09,53;CL:0002031,2.12e-08,120;CL:0000791,2.23e-07,18;CL:0000789,2.23e-07,18;CL:0002420,2.23e-07,18;CL:0002419,2.23e-07,18;CL:0000790,2.23e-07,18;CL:0002087,3.92e-07,115 | |||
|ontology_enrichment_development_v019=CL:0000790;2.14e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.43e-23!115;UBERON:0001049!1.54e-08!57;UBERON:0005068!1.54e-08!57;UBERON:0006241!1.54e-08!57;UBERON:0007135!1.54e-08!57;UBERON:0003080!2.14e-07!42;UBERON:0002780!2.44e-07!41;UBERON:0001890!2.44e-07!41;UBERON:0006240!2.44e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;7.06e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.57e-23,114;UBERON:0001049,1.79e-08,56;UBERON:0005068,1.79e-08,56;UBERON:0006241,1.79e-08,56;UBERON:0007135,1.79e-08,56;UBERON:0000073,6.67e-08,53;UBERON:0002616,6.67e-08,53;UBERON:0002780,2.44e-07,41;UBERON:0001890,2.44e-07,41;UBERON:0003080,2.44e-07,41;UBERON:0006240,2.44e-07,41 | |||
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| ||
|short_description=p2@REV3L | |short_description=p2@REV3L | ||
}} | }} |
Latest revision as of 20:51, 19 September 2015
Short description: | p2@REV3L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_REV3L_5end |
Coexpression cluster: | C1826_Neutrophils_parietal_lung_occipital_cerebellum_temporal_CD4 |
Association with transcript: | 0bp_to_ENST00000368802, ENST00000368805, ENST00000543871, NM_002912, uc003pux.3, uc003puy.3_5end |
EntrezGene: | REV3L |
HGNC: | 9968 |
UniProt: | O60673F5H5X8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.74e-13 | 168 |
hematopoietic oligopotent progenitor cell | 5.39e-12 | 161 |
hematopoietic multipotent progenitor cell | 5.39e-12 | 161 |
hematopoietic cell | 5.02e-11 | 177 |
leukocyte | 4.42e-10 | 136 |
lymphoid lineage restricted progenitor cell | 9.09e-10 | 52 |
lymphocyte | 2.19e-09 | 53 |
common lymphoid progenitor | 2.19e-09 | 53 |
hematopoietic lineage restricted progenitor cell | 2.12e-08 | 120 |
mature alpha-beta T cell | 2.23e-07 | 18 |
alpha-beta T cell | 2.23e-07 | 18 |
immature T cell | 2.23e-07 | 18 |
mature T cell | 2.23e-07 | 18 |
immature alpha-beta T cell | 2.23e-07 | 18 |
nongranular leukocyte | 3.92e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.57e-23 | 114 |
neural tube | 1.79e-08 | 56 |
neural rod | 1.79e-08 | 56 |
future spinal cord | 1.79e-08 | 56 |
neural keel | 1.79e-08 | 56 |
regional part of nervous system | 6.67e-08 | 53 |
regional part of brain | 6.67e-08 | 53 |
regional part of forebrain | 2.44e-07 | 41 |
forebrain | 2.44e-07 | 41 |
anterior neural tube | 2.44e-07 | 41 |
future forebrain | 2.44e-07 | 41 |