FFCP PHASE1:Hg19::chr22:31892134..31892154,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9814 | |EntrezGene=9814 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29064 | |HGNC=29064 | ||
|TSSclassifier=strong | |||
|UniProt=A8K8P3 | |UniProt=A8K8P3 | ||
|association_with_transcript=-106bp_to_ENST00000414585,ENST00000421060,ENST00000432498,ENST00000443326,ENST00000540643,NM_001007467,NM_014775,uc003ald.1,uc003ale.2,uc003alf.2,uc003alg.2,uc003alh.2,uc011alp.1,uc011alq.1_5end | |association_with_transcript=-106bp_to_ENST00000414585,ENST00000421060,ENST00000432498,ENST00000443326,ENST00000540643,NM_001007467,NM_014775,uc003ald.1,uc003ale.2,uc003alf.2,uc003alg.2,uc003alh.2,uc011alp.1,uc011alq.1_5end | ||
|cluster_id=chr22:31892134..31892154,+ | |||
|description=CAGE_peak_3_at_SFI1_5end | |description=CAGE_peak_3_at_SFI1_5end | ||
|id=chr22:31892134..31892154,+ | |id=chr22:31892134..31892154,+ | ||
|ontology_enrichment_celltype=CL:0000738!3.49e-15!140;CL:0000791!1.28e-11!18;CL:0000789!1.28e-11!18;CL:0002420!1.28e-11!18;CL:0002419!1.28e-11!18;CL:0000790!1.28e-11!18;CL:0002087!2.09e-11!119;CL:0002031!3.29e-10!124;CL:0000084!6.04e-09!25;CL:0000827!6.04e-09!25;CL:0000988!1.50e-08!182;CL:0000037!1.81e-08!172;CL:0000566!1.81e-08!172;CL:0000625!2.33e-08!11;CL:0002032!2.41e-07!165;CL:0000837!2.41e-07!165;CL:0000838!7.29e-07!52;CL:0000542!8.13e-07!53;CL:0000051!8.13e-07!53 | |ontology_enrichment_celltype=CL:0000738!3.49e-15!140;CL:0000791!1.28e-11!18;CL:0000789!1.28e-11!18;CL:0002420!1.28e-11!18;CL:0002419!1.28e-11!18;CL:0000790!1.28e-11!18;CL:0002087!2.09e-11!119;CL:0002031!3.29e-10!124;CL:0000084!6.04e-09!25;CL:0000827!6.04e-09!25;CL:0000988!1.50e-08!182;CL:0000037!1.81e-08!172;CL:0000566!1.81e-08!172;CL:0000625!2.33e-08!11;CL:0002032!2.41e-07!165;CL:0000837!2.41e-07!165;CL:0000838!7.29e-07!52;CL:0000542!8.13e-07!53;CL:0000051!8.13e-07!53 | ||
|ontology_enrichment_celltype_v019=CL:0000791;5.25e-14;18!CL:0000789;5.25e-14;18!CL:0002419;5.25e-14;18!CL:0000625;1.96e-10;11!CL:0000084;1.96e-10;25 | |ontology_enrichment_celltype_v019=CL:0000791;5.25e-14;18!CL:0000789;5.25e-14;18!CL:0002419;5.25e-14;18!CL:0000625;1.96e-10;11!CL:0000084;1.96e-10;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.92e-17,136;CL:0000791,4.85e-14,18;CL:0000789,4.85e-14,18;CL:0002420,4.85e-14,18;CL:0002419,4.85e-14,18;CL:0000790,4.85e-14,18;CL:0002087,9.94e-13,115;CL:0002031,3.05e-11,120;CL:0000625,1.93e-10,11;CL:0000084,3.62e-10,25;CL:0000827,3.62e-10,25;CL:0000037,1.36e-09,168;CL:0000988,1.89e-09,177;CL:0002032,3.74e-08,161;CL:0000837,3.74e-08,161;CL:0000766,5.06e-08,72;CL:0000838,3.56e-07,52;CL:0000542,7.63e-07,53;CL:0000051,7.63e-07,53;CL:0000473,9.82e-07,48;CL:0000234,9.82e-07,48 | |||
|ontology_enrichment_development_v019=CL:0000790;5.25e-14;18 | |ontology_enrichment_development_v019=CL:0000790;5.25e-14;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.32e-26!115;UBERON:0001049!6.21e-17!57;UBERON:0005068!6.21e-17!57;UBERON:0006241!6.21e-17!57;UBERON:0007135!6.21e-17!57;UBERON:0002616!6.61e-14!59;UBERON:0003080!7.44e-14!42;UBERON:0002780!1.06e-13!41;UBERON:0001890!1.06e-13!41;UBERON:0006240!1.06e-13!41;UBERON:0002020!8.29e-11!34;UBERON:0003528!8.29e-11!34;UBERON:0001893!1.41e-10!34;UBERON:0002791!2.65e-10!33;UBERON:0000955!5.34e-10!69;UBERON:0006238!5.34e-10!69;UBERON:0001869!8.34e-10!32;UBERON:0002619!8.23e-09!22;UBERON:0003075!1.64e-08!86;UBERON:0007284!1.64e-08!86;UBERON:0001950!1.76e-08!20;UBERON:0005743!6.04e-08!86;UBERON:0002390!6.25e-08!102;UBERON:0003061!6.25e-08!102;UBERON:0001017!6.48e-08!82;UBERON:0000956!2.12e-07!25;UBERON:0000203!2.12e-07!25;UBERON:0002346!2.67e-07!90 | |ontology_enrichment_uberon=UBERON:0007023!1.32e-26!115;UBERON:0001049!6.21e-17!57;UBERON:0005068!6.21e-17!57;UBERON:0006241!6.21e-17!57;UBERON:0007135!6.21e-17!57;UBERON:0002616!6.61e-14!59;UBERON:0003080!7.44e-14!42;UBERON:0002780!1.06e-13!41;UBERON:0001890!1.06e-13!41;UBERON:0006240!1.06e-13!41;UBERON:0002020!8.29e-11!34;UBERON:0003528!8.29e-11!34;UBERON:0001893!1.41e-10!34;UBERON:0002791!2.65e-10!33;UBERON:0000955!5.34e-10!69;UBERON:0006238!5.34e-10!69;UBERON:0001869!8.34e-10!32;UBERON:0002619!8.23e-09!22;UBERON:0003075!1.64e-08!86;UBERON:0007284!1.64e-08!86;UBERON:0001950!1.76e-08!20;UBERON:0005743!6.04e-08!86;UBERON:0002390!6.25e-08!102;UBERON:0003061!6.25e-08!102;UBERON:0001017!6.48e-08!82;UBERON:0000956!2.12e-07!25;UBERON:0000203!2.12e-07!25;UBERON:0002346!2.67e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;6.68e-12;41!UBERON:0001890;6.68e-12;41!UBERON:0000073;3.92e-11;53!UBERON:0002616;3.92e-11;53!UBERON:0001950;2.41e-10;20!UBERON:0002619;3.37e-10;22!UBERON:0001893;5.05e-10;34!UBERON:0003528;5.62e-10;34!UBERON:0002020;5.62e-10;34!UBERON:0002791;7.78e-10;32!UBERON:0001869;1.33e-09;32!UBERON:0007023;2.85e-08;114!UBERON:0000956;4.07e-08;25!UBERON:0000203;4.07e-08;25!UBERON:0000178;7.76e-08;15!UBERON:0000179;7.76e-08;15!UBERON:0000463;7.76e-08;15 | |ontology_enrichment_uberon_v019=UBERON:0002780;6.68e-12;41!UBERON:0001890;6.68e-12;41!UBERON:0000073;3.92e-11;53!UBERON:0002616;3.92e-11;53!UBERON:0001950;2.41e-10;20!UBERON:0002619;3.37e-10;22!UBERON:0001893;5.05e-10;34!UBERON:0003528;5.62e-10;34!UBERON:0002020;5.62e-10;34!UBERON:0002791;7.78e-10;32!UBERON:0001869;1.33e-09;32!UBERON:0007023;2.85e-08;114!UBERON:0000956;4.07e-08;25!UBERON:0000203;4.07e-08;25!UBERON:0000178;7.76e-08;15!UBERON:0000179;7.76e-08;15!UBERON:0000463;7.76e-08;15 | ||
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| ||
|short_description=p3@SFI1 | |short_description=p3@SFI1 | ||
}} | }} |
Latest revision as of 20:42, 19 September 2015
Short description: | p3@SFI1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SFI1_5end |
Coexpression cluster: | NA |
Association with transcript: | -106bp_to_ENST00000414585, ENST00000421060, ENST00000432498, ENST00000443326, ENST00000540643, NM_001007467, NM_014775, uc003ald.1, uc003ale.2, uc003alf.2, uc003alg.2, uc003alh.2, uc011alp.1, uc011alq.1_5end |
EntrezGene: | SFI1 |
HGNC: | 29064 |
UniProt: | A8K8P3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.92e-17 | 136 |
mature alpha-beta T cell | 4.85e-14 | 18 |
alpha-beta T cell | 4.85e-14 | 18 |
immature T cell | 4.85e-14 | 18 |
mature T cell | 4.85e-14 | 18 |
immature alpha-beta T cell | 4.85e-14 | 18 |
nongranular leukocyte | 9.94e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 3.05e-11 | 120 |
CD8-positive, alpha-beta T cell | 1.93e-10 | 11 |
T cell | 3.62e-10 | 25 |
pro-T cell | 3.62e-10 | 25 |
hematopoietic stem cell | 1.36e-09 | 168 |
hematopoietic cell | 1.89e-09 | 177 |
hematopoietic oligopotent progenitor cell | 3.74e-08 | 161 |
hematopoietic multipotent progenitor cell | 3.74e-08 | 161 |
myeloid leukocyte | 5.06e-08 | 72 |
lymphoid lineage restricted progenitor cell | 3.56e-07 | 52 |
lymphocyte | 7.63e-07 | 53 |
common lymphoid progenitor | 7.63e-07 | 53 |
defensive cell | 9.82e-07 | 48 |
phagocyte | 9.82e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.79e-31 | 114 |
neural tube | 4.22e-21 | 56 |
neural rod | 4.22e-21 | 56 |
future spinal cord | 4.22e-21 | 56 |
neural keel | 4.22e-21 | 56 |
regional part of nervous system | 1.38e-19 | 53 |
regional part of brain | 1.38e-19 | 53 |
regional part of forebrain | 6.05e-17 | 41 |
forebrain | 6.05e-17 | 41 |
anterior neural tube | 6.05e-17 | 41 |
future forebrain | 6.05e-17 | 41 |
brain | 3.01e-13 | 68 |
future brain | 3.01e-13 | 68 |
brain grey matter | 3.44e-13 | 34 |
gray matter | 3.44e-13 | 34 |
telencephalon | 6.78e-13 | 34 |
regional part of telencephalon | 4.13e-12 | 32 |
cerebral hemisphere | 6.81e-12 | 32 |
neural plate | 2.35e-11 | 82 |
presumptive neural plate | 2.35e-11 | 82 |
neocortex | 3.45e-11 | 20 |
central nervous system | 4.45e-11 | 81 |
regional part of cerebral cortex | 5.41e-11 | 22 |
neurectoderm | 5.18e-10 | 86 |
cerebral cortex | 8.83e-09 | 25 |
pallium | 8.83e-09 | 25 |
hematopoietic system | 9.39e-09 | 98 |
blood island | 9.39e-09 | 98 |
ecto-epithelium | 1.43e-08 | 104 |
nervous system | 2.52e-08 | 89 |
hemolymphoid system | 6.97e-08 | 108 |
pre-chordal neural plate | 7.60e-08 | 61 |
blood | 2.49e-07 | 15 |
haemolymphatic fluid | 2.49e-07 | 15 |
organism substance | 2.49e-07 | 15 |