FFCP PHASE1:Hg19::chr1:92414952..92414965,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=676 | |EntrezGene=676 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1105 | |HGNC=1105 | ||
|TSSclassifier=strong | |||
|UniProt=C9J0Z0,C9JJU3,C9J1F7,C9JMP1,C9JLZ2,F8VZ63,F8W0H2 | |UniProt=C9J0Z0,C9JJU3,C9J1F7,C9JMP1,C9JLZ2,F8VZ63,F8W0H2 | ||
|association_with_transcript=0bp_to_ENST00000355011,ENST00000426141,ENST00000427104,ENST00000448194,ENST00000449584,ENST00000450792,ENST00000461218,ENST00000470955,ENST00000476711,ENST00000484833,ENST00000548992,ENST00000552654_5end | |association_with_transcript=0bp_to_ENST00000355011,ENST00000426141,ENST00000427104,ENST00000448194,ENST00000449584,ENST00000450792,ENST00000461218,ENST00000470955,ENST00000476711,ENST00000484833,ENST00000548992,ENST00000552654_5end | ||
|cluster_id=chr1:92414952..92414965,+ | |||
|coexpression_cluster_id=C157 | |coexpression_cluster_id=C157 | ||
|description=CAGE_peak_1_at_BRDT_5end | |description=CAGE_peak_1_at_BRDT_5end | ||
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|ontology_enrichment_celltype=CL:0000039!3.21e-34!7;CL:0000586!3.21e-34!7;CL:0002541!7.90e-20!3;CL:0002322!9.19e-12!5;CL:0002553!4.35e-08!1 | |ontology_enrichment_celltype=CL:0000039!3.21e-34!7;CL:0000586!3.21e-34!7;CL:0002541!7.90e-20!3;CL:0002322!9.19e-12!5;CL:0002553!4.35e-08!1 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.07e-67;7!CL:0000586;1.07e-67;7!CL:0002553;1.23e-14;1!CL:1000415;7.03e-08;2 | |ontology_enrichment_celltype_v019=CL:0000039;1.07e-67;7!CL:0000586;1.07e-67;7!CL:0002553;1.23e-14;1!CL:1000415;7.03e-08;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.01e-67,7;CL:0000586,1.01e-67,7;CL:0002553,1.23e-14,1;CL:1000415,7.03e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.03e-48;10!UBERON:0005564;7.03e-48;10 | |ontology_enrichment_development_v019=UBERON:0009117;7.03e-48;10!UBERON:0005564;7.03e-48;10 | ||
|ontology_enrichment_disease=DOID:3095!3.50e-18!22;DOID:2994!3.50e-18!22;DOID:1799!3.80e-08!1;DOID:10165!3.80e-08!1;DOID:1798!3.80e-08!1;DOID:305!9.43e-07!106 | |ontology_enrichment_disease=DOID:3095!3.50e-18!22;DOID:2994!3.50e-18!22;DOID:1799!3.80e-08!1;DOID:10165!3.80e-08!1;DOID:1798!3.80e-08!1;DOID:305!9.43e-07!106 | ||
|ontology_enrichment_disease_v019=DOID:3095;6.77e-29;22!DOID:2994;6.77e-29;22!DOID:1799;8.75e-15;1!DOID:10165;8.75e-15;1!DOID:1798;8.75e-15;1!DOID:305;1.49e-07;106 | |ontology_enrichment_disease_v019=DOID:3095;6.77e-29;22!DOID:2994;6.77e-29;22!DOID:1799;8.75e-15;1!DOID:10165;8.75e-15;1!DOID:1798;8.75e-15;1!DOID:305;1.49e-07;106 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,6.63e-29,22;DOID:2994,6.63e-29,22;DOID:1799,9.36e-15,1;DOID:10165,9.36e-15,1;DOID:1798,9.36e-15,1;DOID:0050687,5.66e-12,143;DOID:305,1.97e-11,106 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.44e-30!8;UBERON:0003135!2.74e-29!11;UBERON:0000476!7.90e-20!3;UBERON:0000920!7.90e-20!3;UBERON:0003101!1.87e-18!22;UBERON:0000079!1.87e-18!22;UBERON:0003124!7.31e-15!7;UBERON:0005631!2.70e-11!14;UBERON:0000158!2.70e-11!14;UBERON:0000991!3.60e-11!21;UBERON:0009196!3.60e-11!21;UBERON:0009117!3.60e-11!21;UBERON:0005564!3.60e-11!21;UBERON:0004176!1.23e-10!22;UBERON:0002323!2.88e-08!46;UBERON:0001301!8.51e-08!1;UBERON:0003133!8.78e-08!48;UBERON:0005156!9.88e-08!59;UBERON:0000990!9.88e-08!59;UBERON:0004458!1.09e-07!49;UBERON:0003886!3.34e-07!63;UBERON:0000464!5.33e-07!104 | |ontology_enrichment_uberon=UBERON:0000473!3.44e-30!8;UBERON:0003135!2.74e-29!11;UBERON:0000476!7.90e-20!3;UBERON:0000920!7.90e-20!3;UBERON:0003101!1.87e-18!22;UBERON:0000079!1.87e-18!22;UBERON:0003124!7.31e-15!7;UBERON:0005631!2.70e-11!14;UBERON:0000158!2.70e-11!14;UBERON:0000991!3.60e-11!21;UBERON:0009196!3.60e-11!21;UBERON:0009117!3.60e-11!21;UBERON:0005564!3.60e-11!21;UBERON:0004176!1.23e-10!22;UBERON:0002323!2.88e-08!46;UBERON:0001301!8.51e-08!1;UBERON:0003133!8.78e-08!48;UBERON:0005156!9.88e-08!59;UBERON:0000990!9.88e-08!59;UBERON:0004458!1.09e-07!49;UBERON:0003886!3.34e-07!63;UBERON:0000464!5.33e-07!104 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;7.47e-60;8!UBERON:0003135;1.60e-43;11!UBERON:0003101;3.30e-29;22!UBERON:0000079;3.30e-29;22!UBERON:0000991;9.79e-23;21!UBERON:0002323;4.07e-15;45!UBERON:0002553;9.99e-10;52!UBERON:0004458;4.42e-09;48!UBERON:0003133;5.86e-08;44 | |ontology_enrichment_uberon_v019=UBERON:0000473;7.47e-60;8!UBERON:0003135;1.60e-43;11!UBERON:0003101;3.30e-29;22!UBERON:0000079;3.30e-29;22!UBERON:0000991;9.79e-23;21!UBERON:0002323;4.07e-15;45!UBERON:0002553;9.99e-10;52!UBERON:0004458;4.42e-09;48!UBERON:0003133;5.86e-08;44 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,7.10e-60,8;UBERON:0003135,1.54e-43,11;UBERON:0003101,3.23e-29,22;UBERON:0000079,3.23e-29,22;UBERON:0000991,9.60e-23,21;UBERON:0009196,9.60e-23,21;UBERON:0009117,9.60e-23,21;UBERON:0005564,9.60e-23,21;UBERON:0004176,1.06e-21,22;UBERON:0002323,7.11e-18,46;UBERON:0004458,9.75e-17,49;UBERON:0003886,4.03e-15,54;UBERON:0002553,2.67e-13,61;UBERON:0005156,1.38e-10,59;UBERON:0000990,1.38e-10,59;UBERON:0003133,8.49e-10,48 | |||
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|short_description=p1@BRDT | |short_description=p1@BRDT | ||
}} | }} |
Latest revision as of 19:49, 19 September 2015
Short description: | p1@BRDT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BRDT_5end |
Coexpression cluster: | C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea |
Association with transcript: | 0bp_to_ENST00000355011, ENST00000426141, ENST00000427104, ENST00000448194, ENST00000449584, ENST00000450792, ENST00000461218, ENST00000470955, ENST00000476711, ENST00000484833, ENST00000548992, ENST00000552654_5end |
EntrezGene: | BRDT |
HGNC: | 1105 |
UniProt: | C9J0Z0C9JJU3C9J1F7C9JMP1C9JLZ2F8VZ63F8W0H2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.01e-67 | 7 |
germ cell | 1.01e-67 | 7 |
lung fibroblast | 1.23e-14 | 1 |
epithelial cell of gall bladder | 7.03e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 7.10e-60 | 8 |
male reproductive organ | 1.54e-43 | 11 |
male organism | 3.23e-29 | 22 |
male reproductive system | 3.23e-29 | 22 |
gonad | 9.60e-23 | 21 |
indifferent external genitalia | 9.60e-23 | 21 |
indifferent gonad | 9.60e-23 | 21 |
gonad primordium | 9.60e-23 | 21 |
external genitalia | 1.06e-21 | 22 |
body cavity | 7.11e-18 | 46 |
body cavity or lining | 9.75e-17 | 49 |
body cavity precursor | 4.03e-15 | 54 |
anatomical cavity | 2.67e-13 | 61 |
reproductive structure | 1.38e-10 | 59 |
reproductive system | 1.38e-10 | 59 |
reproductive organ | 8.49e-10 | 48 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 6.63e-29 | 22 |
germ cell cancer | 6.63e-29 | 22 |
islet cell tumor | 9.36e-15 | 1 |
endocrine pancreas cancer | 9.36e-15 | 1 |
pancreatic endocrine carcinoma | 9.36e-15 | 1 |
cell type cancer | 5.66e-12 | 143 |
carcinoma | 1.97e-11 | 106 |