FFCP PHASE1:Hg19::chr7:83278322..83278339,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9723 | |EntrezGene=9723 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10727 | |HGNC=10727 | ||
|TSSclassifier=strong | |||
|UniProt=O15041 | |UniProt=O15041 | ||
|association_with_transcript=0bp_to_ENST00000307792,uc003uhy.1_5end | |association_with_transcript=0bp_to_ENST00000307792,uc003uhy.1_5end | ||
|cluster_id=chr7:83278322..83278339,- | |||
|coexpression_cluster_id=C1540 | |||
|description=CAGE_peak_6_at_SEMA3E_5end | |description=CAGE_peak_6_at_SEMA3E_5end | ||
|id=chr7:83278322..83278339,- | |id=chr7:83278322..83278339,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000319;3.13e-07;1!CL:0000167;4.55e-07;1!CL:0000164;4.55e-07;1!CL:0000502;4.55e-07;1!CL:0000172;4.55e-07;1!CL:0000173;4.55e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000319,2.95e-07,1;CL:0000167,4.97e-07,1;CL:0000164,4.97e-07,1;CL:0000502,4.97e-07,1;CL:0000172,4.97e-07,1;CL:0000173,4.97e-07,1;CL:0002351,4.97e-07,1 | |||
|ontology_enrichment_development_v019=CL:0002351;4.55e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3030;3.13e-07;1!DOID:4430;4.55e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.01e-08,143;DOID:305,1.88e-07,106;DOID:3030,2.95e-07,1;DOID:4430,4.97e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.56e-24!115;UBERON:0003075!3.28e-18!86;UBERON:0007284!3.28e-18!86;UBERON:0002346!9.06e-17!90;UBERON:0001049!1.16e-14!57;UBERON:0005068!1.16e-14!57;UBERON:0006241!1.16e-14!57;UBERON:0007135!1.16e-14!57;UBERON:0001017!4.71e-14!82;UBERON:0005743!1.24e-13!86;UBERON:0002020!1.05e-12!34;UBERON:0003528!1.05e-12!34;UBERON:0002616!1.18e-12!59;UBERON:0001869!3.15e-12!32;UBERON:0001893!3.52e-12!34;UBERON:0003056!5.20e-12!61;UBERON:0000073!6.95e-12!94;UBERON:0001016!6.95e-12!94;UBERON:0000955!7.38e-12!69;UBERON:0006238!7.38e-12!69;UBERON:0002791!1.76e-11!33;UBERON:0002780!2.23e-11!41;UBERON:0001890!2.23e-11!41;UBERON:0006240!2.23e-11!41;UBERON:0000153!3.82e-11!129;UBERON:0007811!3.82e-11!129;UBERON:0003080!6.06e-11!42;UBERON:0000033!1.76e-10!123;UBERON:0004121!2.18e-10!169;UBERON:0000924!8.69e-10!173;UBERON:0006601!8.69e-10!173;UBERON:0002619!2.61e-09!22;UBERON:0001950!4.99e-09!20;UBERON:0000481!6.46e-08!347;UBERON:0000956!9.55e-08!25;UBERON:0000203!9.55e-08!25;UBERON:0002308!5.14e-07!9;UBERON:0000125!5.14e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0005383;3.34e-08;3!UBERON:0005382;3.34e-08;3!UBERON:0001874;6.23e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005383,2.64e-08,3;UBERON:0005382,2.64e-08,3;UBERON:0001874,5.57e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0.443458794925128,1.05401742831751,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.69716365721711,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,1.44331342025273,0.115930404975077,0.117408694235822,0,0,0,1.58040879591855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0,0.0868836144680828,0.391602314925481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0.114814448164607,0,0,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0.121360521749513,0,0,0,0,0,0,0.281338832821026,0,0,0,0.398495976502139,0,0.503865495708552,0,0,0,0.539210106883961,0.179021174675609,0,0.394573622547734,0,0,0,0.371072392647405,1.99613798001194,0,0,0,0,2.03402920234213,2.36387681767936,0.344743373241465,0.583209226766509,0,0.885741385813839,1.4471572635049,0,0.221158519862449,0.295547618953547,0.219385397153973,0,1.67308493134324,0.846452843541768,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0.189753732724185,0.158936578980379,0,0,0,0,0,0.353830258013357,0,0.296521128680622,0,0,0.067401132980677,0,1.1713222286267,0,0.19566461893209,0,0,0,0,0.126373159256976,0.450970258243478,0.622129148383483,0,0,0,0,0.284609546029793,0,0.520679215005393,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0.316553979779393,0,0.0801588202515337,1.06726497369676,0.19980960958213,0,7.21580555845269,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,0,0,0,2.06697711180972,0,0,0.681017030557878,0.321506296930038,0.137539436597234,0,0,0,0.242998226632099,0,0.0788057072991982,0.104909176269996,0.105600336519406,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0.904980694530854,0.52893040697076,0,0.704815022316672,0.320362237703084,0.314408610199332,0,0,0,0,0.638341257770182,1.08803560673895,0,0,0.983617892129413,0.785270481251171,0,0.366078794705889,0.1251909307065,0.573409195690071,0.221858103073705,0.18628920882415,0,0.124980407962107,0,0,0,4.21501415226193,0.144921028610825,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.9712147426264,0.857766365499703,0,0,0.231522474323834,0.244736704506468,0,0,0,0.353378291891762,0,0,1.53744911152768,0,0,0.414775308455192,0,0,0,0,7.86473308011902,0,0,0,0,1.13503190713367,0.184105950251841,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0.449604575675217,1.41696576325585,0.319267718114302,0.41023272848151,1.26035848110859,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0.0752103283492573,0,0,0,1.31017534008077,0,0.270150338473579,0,0.413373593002368,0.0634158101939068,0,0,0,0,7.15469594781734,0,0,0,0,0.354809480650555,0,0,0,0.131545547125698,0.118193840883968,1.55723962648897,0.863424021355654,2.82808061848803,0,0.913158720509496,0.215927591218621,0,0.142953088353313,0,5.57958841767001,0.695433089210318,0,0,0,0,1.29068207646083,0,0,0,0.68732060563215,0,0,0,0,3.41370189950354,0,0,0,0,0,0,0.594600453887843,0,0,0.603851374266694,0.0771741581079447,0,2.82190377816914,0.490296643507811,3.29947165942276,0.981542335574726,0,0,0,0,0,0,0,0,0.0802413666891683,2.92134555298607,0.917458566809082,0,0.788857810965923,0.339957450954573,0.436350690340377,0.5290268405154,0,0,0,0,0.109265571963696,3.54755802832024,0.101988829741982,0,0,0,0.151557396436479,0,0,0.413731983447581,0.213233981900981,0,0.129177819672012,0.186224142887574,2.13050538903166,0.12729431655633,0,0.217716747896961,0,0.202056159043763,0.430333232356058,0.332660356546013,0,3.62872975984233,0,0,0,0.244482888365733,0,1.33151354837103,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0.443458794925128,1.05401742831751,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.69716365721711,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0,0,0,0,1.44331342025273,0.115930404975077,0.117408694235822,0,0,0,1.58040879591855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0,0.0868836144680828,0.391602314925481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0,0.114814448164607,0,0,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42793898803392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0.121360521749513,0,0,0,0,0,0,0.281338832821026,0,0,0,0.398495976502139,0,0.503865495708552,0,0,0,0.539210106883961,0.179021174675609,0,0.394573622547734,0,0,0,0.371072392647405,1.99613798001194,0,0,0,0,2.03402920234213,2.36387681767936,0.344743373241465,0.583209226766509,0,0.885741385813839,1.4471572635049,0,0.221158519862449,0.295547618953547,0.219385397153973,0,1.67308493134324,0.846452843541768,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0.189753732724185,0.158936578980379,0,0,0,0,0,0.353830258013357,0,0.296521128680622,0,0,0.067401132980677,0,1.1713222286267,0,0.19566461893209,0,0,0,0,0.126373159256976,0.450970258243478,0.622129148383483,0,0,0,0,0.284609546029793,0,0.520679215005393,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0.316553979779393,0,0.0801588202515337,1.06726497369676,0.19980960958213,0,7.21580555845269,0,0,0,0,0,0,0,0,0,0.410716136675979,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,0,0,0,2.06697711180972,0,0,0.681017030557878,0.321506296930038,0.137539436597234,0,0,0,0.242998226632099,0,0.0788057072991982,0.104909176269996,0.105600336519406,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0.904980694530854,0.52893040697076,0,0.704815022316672,0.320362237703084,0.314408610199332,0,0,0,0,0.638341257770182,1.08803560673895,0,0,0.983617892129413,0.785270481251171,0,0.366078794705889,0.1251909307065,0.573409195690071,0.221858103073705,0.18628920882415,0,0.124980407962107,0,0,0,4.21501415226193,0.144921028610825,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.9712147426264,0.857766365499703,0,0,0.231522474323834,0.244736704506468,0,0,0,0.353378291891762,0,0,1.53744911152768,0,0,0.414775308455192,0,0,0,0,7.86473308011902,0,0,0,0,1.13503190713367,0.184105950251841,0,0,0,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0.449604575675217,1.41696576325585,0.319267718114302,0.41023272848151,1.26035848110859,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0.198916222116275,0.0752103283492573,0,0,0,1.31017534008077,0,0.270150338473579,0,0.413373593002368,0.0634158101939068,0,0,0,0,7.15469594781734,0,0,0,0,0.354809480650555,0,0,0,0.131545547125698,0.118193840883968,1.55723962648897,0.863424021355654,2.82808061848803,0,0.913158720509496,0.215927591218621,0,0.142953088353313,0,5.57958841767001,0.695433089210318,0,0,0,0,1.29068207646083,0,0,0,0.68732060563215,0,0,0,0,3.41370189950354,0,0,0,0,0,0,0.594600453887843,0,0,0.603851374266694,0.0771741581079447,0,2.82190377816914,0.490296643507811,3.29947165942276,0.981542335574726,0,0,0,0,0,0,0,0,0.0802413666891683,2.92134555298607,0.917458566809082,0,0.788857810965923,0.339957450954573,0.436350690340377,0.5290268405154,0,0,0,0,0.109265571963696,3.54755802832024,0.101988829741982,0,0,0,0.151557396436479,0,0,0.413731983447581,0.213233981900981,0,0.129177819672012,0.186224142887574,2.13050538903166,0.12729431655633,0,0.217716747896961,0,0.202056159043763,0.430333232356058,0.332660356546013,0,3.62872975984233,0,0,0,0.244482888365733,0,1.33151354837103,0,0 | ||
|short_description=p6@SEMA3E | |short_description=p6@SEMA3E | ||
}} | }} |
Latest revision as of 19:32, 19 September 2015
Short description: | p6@SEMA3E |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SEMA3E_5end |
Coexpression cluster: | C1540_gastric_pharyngeal_mucinous_smallcell_transitionalcell_rhabdomyosarcoma_somatostatinoma |
Association with transcript: | 0bp_to_ENST00000307792, uc003uhy.1_5end |
EntrezGene: | SEMA3E |
HGNC: | 10727 |
UniProt: | O15041 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 2.95e-07 | 1 |
peptide hormone secreting cell | 4.97e-07 | 1 |
enteroendocrine cell | 4.97e-07 | 1 |
type D enteroendocrine cell | 4.97e-07 | 1 |
somatostatin secreting cell | 4.97e-07 | 1 |
pancreatic D cell | 4.97e-07 | 1 |
progenitor cell of endocrine pancreas | 4.97e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
caudate-putamen | 2.64e-08 | 3 |
dorsal striatum | 2.64e-08 | 3 |
putamen | 5.57e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.01e-08 | 143 |
carcinoma | 1.88e-07 | 106 |
mucinous adenocarcinoma | 2.95e-07 | 1 |
somatostatinoma | 4.97e-07 | 1 |