FFCP PHASE1:Hg19::chr3:8775466..8775512,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=859 | |EntrezGene=859 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1529 | |HGNC=1529 | ||
|TSSclassifier=strong | |||
|UniProt=P56539,A8K777 | |UniProt=P56539,A8K777 | ||
|association_with_transcript=0bp_to_ENST00000343849,NM_001234,NM_033337,uc003bra.2,uc003brb.2_5end | |association_with_transcript=0bp_to_ENST00000343849,NM_001234,NM_033337,uc003bra.2,uc003brb.2_5end | ||
|cluster_id=chr3:8775466..8775512,+ | |||
|coexpression_cluster_id=C134 | |||
|description=CAGE_peak_1_at_CAV3_5end | |description=CAGE_peak_1_at_CAV3_5end | ||
|id=chr3:8775466..8775512,+ | |id=chr3:8775466..8775512,+ | ||
|ontology_enrichment_celltype=CL:0000188!5.34e-14!9;CL:0000594!9.89e-07!3 | |ontology_enrichment_celltype=CL:0000188!5.34e-14!9;CL:0000594!9.89e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000188;1.38e-19;9!CL:0000680;5.51e-13;7!CL:0000515;1.38e-11;3!CL:0000056;8.48e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.46e-19,9;CL:0000515,8.60e-09,4 | |||
|ontology_enrichment_development_v019=CL:0000515;8.48e-09;4!UBERON:0005062;1.09e-08;4!UBERON:0007284;1.09e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;1.31e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,1.29e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.82e-21!115;UBERON:0004151!6.31e-07!3;UBERON:0003978!6.43e-07!3;UBERON:0009751!6.43e-07!3;UBERON:0000946!6.43e-07!3;UBERON:0002523!6.43e-07!3;UBERON:0005983!6.43e-07!3;UBERON:0002165!6.43e-07!3;UBERON:0002062!6.43e-07!3;UBERON:0007280!6.43e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;2.05e-43;16!UBERON:0002036;2.05e-43;16!UBERON:0002385;2.62e-20;31!UBERON:0001015;2.62e-20;31!UBERON:0000383;2.62e-20;31!UBERON:0003978;1.95e-11;3!UBERON:0000946;1.95e-11;3!UBERON:0004151;1.98e-11;3!UBERON:0007100;2.13e-10;25!UBERON:0005090;4.78e-09;2!UBERON:0001630;4.78e-09;2!UBERON:0000341;5.57e-09;2!UBERON:0002133;4.93e-08;2!UBERON:0002081;6.12e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,1.95e-11,3;UBERON:0003978,2.02e-11,3;UBERON:0009751,2.02e-11,3;UBERON:0000946,2.02e-11,3;UBERON:0002523,2.02e-11,3;UBERON:0005983,2.02e-11,3;UBERON:0002165,2.02e-11,3;UBERON:0002062,2.02e-11,3;UBERON:0007280,2.02e-11,3;UBERON:0001134,4.40e-10,62;UBERON:0002036,4.40e-10,62;UBERON:0003082,4.40e-10,62;UBERON:0007023,6.34e-10,114;UBERON:0002385,1.16e-09,64;UBERON:0001015,1.16e-09,64;UBERON:0000383,1.16e-09,64;UBERON:0007100,1.66e-09,27;UBERON:0005090,4.78e-09,2;UBERON:0001630,4.78e-09,2;UBERON:0000341,5.58e-09,2;UBERON:0002329,2.24e-08,71;UBERON:0003059,2.24e-08,71;UBERON:0007282,2.24e-08,71;UBERON:0004290,2.24e-08,71;UBERON:0009618,2.24e-08,71;UBERON:0003077,3.25e-08,72;UBERON:0007285,3.25e-08,72;UBERON:0007524,4.67e-08,73;UBERON:0002133,5.02e-08,2;UBERON:0002081,6.01e-08,2;UBERON:0010227,6.01e-08,2;UBERON:0007503,2.49e-07,78;UBERON:0005256,2.79e-07,122 | |||
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| ||
|short_description=p1@CAV3 | |short_description=p1@CAV3 | ||
}} | }} |
Latest revision as of 18:44, 19 September 2015
Short description: | p1@CAV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CAV3_5end |
Coexpression cluster: | C134_skeletal_diaphragm_tongue_throat_Skeletal_skin_penis |
Association with transcript: | 0bp_to_ENST00000343849, NM_001234, NM_033337, uc003bra.2, uc003brb.2_5end |
EntrezGene: | CAV3 |
HGNC: | 1529 |
UniProt: | P56539A8K777 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.46e-19 | 9 |
skeletal muscle myoblast | 8.60e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 1.95e-11 | 3 |
valve | 2.02e-11 | 3 |
cardiac mesenchyme | 2.02e-11 | 3 |
cardial valve | 2.02e-11 | 3 |
tunica intima | 2.02e-11 | 3 |
heart layer | 2.02e-11 | 3 |
endocardium | 2.02e-11 | 3 |
endocardial cushion | 2.02e-11 | 3 |
presumptive endocardium | 2.02e-11 | 3 |
skeletal muscle tissue | 4.40e-10 | 62 |
striated muscle tissue | 4.40e-10 | 62 |
myotome | 4.40e-10 | 62 |
adult organism | 6.34e-10 | 114 |
muscle tissue | 1.16e-09 | 64 |
musculature | 1.16e-09 | 64 |
musculature of body | 1.16e-09 | 64 |
primary circulatory organ | 1.66e-09 | 27 |
muscle structure | 4.78e-09 | 2 |
muscle organ | 4.78e-09 | 2 |
throat | 5.58e-09 | 2 |
somite | 2.24e-08 | 71 |
presomitic mesoderm | 2.24e-08 | 71 |
presumptive segmental plate | 2.24e-08 | 71 |
dermomyotome | 2.24e-08 | 71 |
trunk paraxial mesoderm | 2.24e-08 | 71 |
paraxial mesoderm | 3.25e-08 | 72 |
presumptive paraxial mesoderm | 3.25e-08 | 72 |
dense mesenchyme tissue | 4.67e-08 | 73 |
atrioventricular valve | 5.02e-08 | 2 |
cardiac atrium | 6.01e-08 | 2 |
future cardiac atrium | 6.01e-08 | 2 |
epithelial vesicle | 2.49e-07 | 78 |
trunk mesenchyme | 2.79e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
heart disease | 1.29e-08 | 2 |