FFCP PHASE1:Hg19::chr3:87276407..87276493,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:87276407..87276493,+
|short_description=p1@CHMP2B
|description=CAGE_peak_1_at_CHMP2B_5end
|association_with_transcript=0bp_to_ENST00000263780,ENST000004716...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25978 | |EntrezGene=25978 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24537 | |HGNC=24537 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQN3,B4DJG8,C9J0A7,B2RE76 | |UniProt=Q9UQN3,B4DJG8,C9J0A7,B2RE76 | ||
|association_with_transcript=0bp_to_ENST00000263780,ENST00000471660,ENST00000472024,ENST00000494980,NM_001244644,NM_014043,uc003dqp.3,uc011bgn.1_5end | |||
|cluster_id=chr3:87276407..87276493,+ | |||
|description=CAGE_peak_1_at_CHMP2B_5end | |||
|id=chr3:87276407..87276493,+ | |||
|ontology_enrichment_celltype=CL:0000766!2.88e-24!76;CL:0002057!8.88e-24!42;CL:0002009!6.66e-21!65;CL:0000860!1.73e-20!45;CL:0000557!4.03e-20!71;CL:0002194!7.89e-20!63;CL:0000576!7.89e-20!63;CL:0000040!7.89e-20!63;CL:0000559!7.89e-20!63;CL:0000839!1.97e-19!70;CL:0000738!5.74e-10!140;CL:0000763!2.66e-09!112;CL:0000049!2.66e-09!112;CL:0002031!1.79e-08!124;CL:0002087!1.67e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.16e-19;33!CL:0002057;6.16e-19;33!CL:0000473;2.35e-17;39!CL:0000234;2.35e-17;39!CL:0000576;1.00e-13;48!CL:0000766;2.53e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.22e-26,72;CL:0000473,1.32e-25,48;CL:0000234,1.32e-25,48;CL:0000860,8.88e-24,42;CL:0002057,8.88e-24,42;CL:0002009,4.89e-23,61;CL:0000557,4.84e-22,67;CL:0002194,6.29e-22,59;CL:0000576,6.29e-22,59;CL:0000040,6.29e-22,59;CL:0000559,6.29e-22,59;CL:0000839,2.55e-21,66;CL:0000738,1.26e-10,136;CL:0000763,4.95e-10,108;CL:0000049,4.95e-10,108;CL:0002031,4.17e-09,120;CL:0002087,4.26e-08,115 | |||
|ontology_enrichment_development_v019=CL:0002057;2.07e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.13e-16!80;UBERON:0001474!3.01e-15!86;UBERON:0000062!2.16e-14!511;UBERON:0004765!3.36e-14!101;UBERON:0001434!3.36e-14!101;UBERON:0002390!8.29e-12!102;UBERON:0003061!8.29e-12!102;UBERON:0002193!3.90e-09!112;UBERON:0002405!1.63e-08!115;UBERON:0007023!1.94e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.61e-18,76;UBERON:0001474,1.46e-16,82;UBERON:0004765,2.87e-16,90;UBERON:0001434,1.89e-14,100;UBERON:0002390,9.47e-13,98;UBERON:0003061,9.47e-13,98;UBERON:0002405,8.35e-12,93;UBERON:0002193,7.42e-10,108;UBERON:0007023,2.19e-08,114 | |||
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| ||
|short_description=p1@CHMP2B | |||
}} | }} |
Latest revision as of 18:36, 19 September 2015
Short description: | p1@CHMP2B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CHMP2B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000263780, ENST00000471660, ENST00000472024, ENST00000494980, NM_001244644, NM_014043, uc003dqp.3, uc011bgn.1_5end |
EntrezGene: | CHMP2B |
HGNC: | 24537 |
UniProt: | Q9UQN3B4DJG8C9J0A7B2RE76 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.22e-26 | 72 |
defensive cell | 1.32e-25 | 48 |
phagocyte | 1.32e-25 | 48 |
classical monocyte | 8.88e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.88e-24 | 42 |
macrophage dendritic cell progenitor | 4.89e-23 | 61 |
granulocyte monocyte progenitor cell | 4.84e-22 | 67 |
monopoietic cell | 6.29e-22 | 59 |
monocyte | 6.29e-22 | 59 |
monoblast | 6.29e-22 | 59 |
promonocyte | 6.29e-22 | 59 |
myeloid lineage restricted progenitor cell | 2.55e-21 | 66 |
leukocyte | 1.26e-10 | 136 |
myeloid cell | 4.95e-10 | 108 |
common myeloid progenitor | 4.95e-10 | 108 |
hematopoietic lineage restricted progenitor cell | 4.17e-09 | 120 |
nongranular leukocyte | 4.26e-08 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.61e-18 | 76 |
bone element | 1.46e-16 | 82 |
skeletal element | 2.87e-16 | 90 |
skeletal system | 1.89e-14 | 100 |
hematopoietic system | 9.47e-13 | 98 |
blood island | 9.47e-13 | 98 |
immune system | 8.35e-12 | 93 |
hemolymphoid system | 7.42e-10 | 108 |
adult organism | 2.19e-08 | 114 |