FFCP PHASE1:Hg19::chr3:8543533..8543553,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=29995 | |EntrezGene=29995 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6633 | |HGNC=6633 | ||
|TSSclassifier=strong | |||
|UniProt=B4DG80 | |UniProt=B4DG80 | ||
|association_with_transcript=0bp_to_ENST00000454244_5end | |association_with_transcript=0bp_to_ENST00000454244_5end | ||
|cluster_id=chr3:8543533..8543553,+ | |||
|coexpression_cluster_id=C2756 | |||
|description=CAGE_peak_2_at_LMCD1_5end | |description=CAGE_peak_2_at_LMCD1_5end | ||
|id=chr3:8543533..8543553,+ | |id=chr3:8543533..8543553,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.05e-14!180;CL:0000136!2.37e-09!15;CL:0000057!1.38e-07!75 | |ontology_enrichment_celltype=CL:0000055!1.05e-14!180;CL:0000136!2.37e-09!15;CL:0000057!1.38e-07!75 | ||
|ontology_enrichment_celltype_v019=CL:0000136;2.74e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.35e-09,15;CL:0000057,4.04e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.23e-15!365;UBERON:0002100!3.36e-13!216;UBERON:0000119!6.65e-11!312;UBERON:0000483!7.01e-11!309;UBERON:0005256!8.89e-10!143;UBERON:0000481!3.25e-09!347;UBERON:0000468!3.98e-09!659;UBERON:0003103!5.20e-09!69;UBERON:0003914!3.65e-08!118;UBERON:0003104!1.30e-07!238;UBERON:0009142!1.30e-07!238;UBERON:0007100!1.60e-07!27;UBERON:0001013!1.88e-07!14;UBERON:0009569!1.95e-07!113;UBERON:0000914!8.21e-07!83;UBERON:0002329!8.21e-07!83;UBERON:0003077!8.21e-07!83;UBERON:0003059!8.21e-07!83;UBERON:0007282!8.21e-07!83;UBERON:0009618!8.21e-07!83;UBERON:0007285!8.21e-07!83;UBERON:0004290!9.61e-07!70 | |ontology_enrichment_uberon=UBERON:0000475!5.23e-15!365;UBERON:0002100!3.36e-13!216;UBERON:0000119!6.65e-11!312;UBERON:0000483!7.01e-11!309;UBERON:0005256!8.89e-10!143;UBERON:0000481!3.25e-09!347;UBERON:0000468!3.98e-09!659;UBERON:0003103!5.20e-09!69;UBERON:0003914!3.65e-08!118;UBERON:0003104!1.30e-07!238;UBERON:0009142!1.30e-07!238;UBERON:0007100!1.60e-07!27;UBERON:0001013!1.88e-07!14;UBERON:0009569!1.95e-07!113;UBERON:0000914!8.21e-07!83;UBERON:0002329!8.21e-07!83;UBERON:0003077!8.21e-07!83;UBERON:0003059!8.21e-07!83;UBERON:0007282!8.21e-07!83;UBERON:0009618!8.21e-07!83;UBERON:0007285!8.21e-07!83;UBERON:0004290!9.61e-07!70 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.20e-07;14!UBERON:0007100;1.91e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,8.65e-12,199;UBERON:0003104,6.33e-11,160;UBERON:0009142,6.33e-11,160;UBERON:0000119,3.14e-10,309;UBERON:0000483,3.32e-10,306;UBERON:0003103,7.03e-09,68;UBERON:0003914,2.75e-08,117;UBERON:0005256,5.66e-08,122;UBERON:0007100,1.04e-07,27;UBERON:0001013,1.23e-07,14;UBERON:0009569,3.48e-07,112;UBERON:0007503,4.64e-07,78;UBERON:0002329,5.15e-07,71;UBERON:0003059,5.15e-07,71;UBERON:0007282,5.15e-07,71;UBERON:0004290,5.15e-07,71;UBERON:0009618,5.15e-07,71;UBERON:0007524,6.43e-07,73;UBERON:0003077,6.88e-07,72;UBERON:0007285,6.88e-07,72 | |||
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|short_description=p2@LMCD1 | |short_description=p2@LMCD1 | ||
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Latest revision as of 17:49, 19 September 2015
Short description: | p2@LMCD1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LMCD1_5end |
Coexpression cluster: | C2756_skeletal_Adipocyte_mature_Preadipocyte_Hepatic_Mesenchymal_aorta |
Association with transcript: | 0bp_to_ENST00000454244_5end |
EntrezGene: | LMCD1 |
HGNC: | 6633 |
UniProt: | B4DG80 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.35e-09 | 15 |
fibroblast | 4.04e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
trunk | 8.65e-12 | 199 |
mesenchyme | 6.33e-11 | 160 |
entire embryonic mesenchyme | 6.33e-11 | 160 |
cell layer | 3.14e-10 | 309 |
epithelium | 3.32e-10 | 306 |
compound organ | 7.03e-09 | 68 |
epithelial tube | 2.75e-08 | 117 |
trunk mesenchyme | 5.66e-08 | 122 |
primary circulatory organ | 1.04e-07 | 27 |
adipose tissue | 1.23e-07 | 14 |
subdivision of trunk | 3.48e-07 | 112 |
epithelial vesicle | 4.64e-07 | 78 |
somite | 5.15e-07 | 71 |
presomitic mesoderm | 5.15e-07 | 71 |
presumptive segmental plate | 5.15e-07 | 71 |
dermomyotome | 5.15e-07 | 71 |
trunk paraxial mesoderm | 5.15e-07 | 71 |
dense mesenchyme tissue | 6.43e-07 | 73 |
paraxial mesoderm | 6.88e-07 | 72 |
presumptive paraxial mesoderm | 6.88e-07 | 72 |