FFCP PHASE1:Hg19::chr18:46476499..46476507,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4092 | |EntrezGene=4092 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6773 | |HGNC=6773 | ||
|TSSclassifier=strong | |||
|UniProt=O15105 | |UniProt=O15105 | ||
|association_with_transcript=286bp_to_AF015261_5end | |association_with_transcript=286bp_to_AF015261_5end | ||
|cluster_id=chr18:46476499..46476507,- | |||
|coexpression_cluster_id=C8 | |coexpression_cluster_id=C8 | ||
|description=CAGE_peak_3_at_SMAD7_5end | |description=CAGE_peak_3_at_SMAD7_5end | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000623;1.87e-19;3!CL:0000767;8.28e-19;3!CL:0000791;1.07e-11;18!CL:0000789;1.07e-11;18!CL:0002419;1.07e-11;18!CL:0000624;2.03e-09;6!CL:0002393;2.03e-09;6!CL:0002397;2.03e-09;6!CL:0000226;6.71e-09;3!CL:0000842;6.71e-09;3!CL:0000084;2.95e-08;25!CL:0000094;2.36e-07;8!CL:0000222;4.08e-07;1!CL:0000542;7.22e-07;53 | |ontology_enrichment_celltype_v019=CL:0000623;1.87e-19;3!CL:0000767;8.28e-19;3!CL:0000791;1.07e-11;18!CL:0000789;1.07e-11;18!CL:0002419;1.07e-11;18!CL:0000624;2.03e-09;6!CL:0002393;2.03e-09;6!CL:0002397;2.03e-09;6!CL:0000226;6.71e-09;3!CL:0000842;6.71e-09;3!CL:0000084;2.95e-08;25!CL:0000094;2.36e-07;8!CL:0000222;4.08e-07;1!CL:0000542;7.22e-07;53 | ||
|ontology_enrichment_celltype_v019_2=CL:0000623,1.99e-19,3;CL:0000825,1.99e-19,3;CL:0000767,5.62e-19,3;CL:0000838,6.01e-12,52;CL:0000738,8.16e-12,136;CL:0000542,1.10e-11,53;CL:0000051,1.10e-11,53;CL:0000791,1.24e-11,18;CL:0000789,1.24e-11,18;CL:0002420,1.24e-11,18;CL:0002419,1.24e-11,18;CL:0000790,1.24e-11,18;CL:0002087,6.91e-10,115;CL:0000624,2.53e-09,6;CL:0000226,5.85e-09,3;CL:0000842,5.85e-09,3;CL:0000037,7.89e-09,168;CL:0000084,3.27e-08,25;CL:0000827,3.27e-08,25;CL:0000988,3.47e-08,177;CL:0000094,2.05e-07,8;CL:0002032,3.57e-07,161;CL:0000837,3.57e-07,161;CL:0002031,6.86e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;1.07e-11;18!UBERON:0005425;4.08e-07;1!CL:0000051;7.22e-07;53 | |ontology_enrichment_development_v019=CL:0000790;1.07e-11;18!UBERON:0005425;4.08e-07;1!CL:0000051;7.22e-07;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;4.08e-07;1!UBERON:0001785;4.08e-07;1!UBERON:0002464;4.08e-07;1!UBERON:0004904;4.08e-07;1!UBERON:0001021;4.08e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0000941;4.08e-07;1!UBERON:0001785;4.08e-07;1!UBERON:0002464;4.08e-07;1!UBERON:0004904;4.08e-07;1!UBERON:0001021;4.08e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.21e-07,1;UBERON:0001785,3.21e-07,1;UBERON:0002464,3.21e-07,1;UBERON:0004904,3.21e-07,1;UBERON:0001021,3.21e-07,1;UBERON:0003902,3.21e-07,1;UBERON:0005425,3.21e-07,1 | |||
|phase1_expression=0.181678379270557,0,0.281908808191942,0,0,0,0,0,0,0,0.697801167972428,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.157421562627358,1.57345710739562,3.83829398097213,2.16742572642506,0,0,0,0,0,0,2.76997704265939,1.20326668482085,1.73608696572681,0,0,0,0.436194716338694,0,0,0,0.411167888021826,0.309706370895104,0,0,0.47296445977717,0,0,0,0,0,0.224723484445085,0,0,0.639337125799041,0.329851300186716,0.398927315243264,0.426224750532694,0,0.56738522469114,0,0.251248665256743,0,0,0,0,0,0.422510572623884,0.212604299965044,0,0.112328631146495,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,1.1384259382189,1.17447437874188,0.764546456250458,1.32171328579026,1.12101712596307,0,1.180258620683,1.17903228824749,2.2616164889946,0,0,0.473447805734733,0,0,0.294605907474837,0.221533894583621,0,0.128091319725675,0.130059347559878,0,0,0,0.593146252648242,0,0,0,0.766440987203842,0.68725489096526,0.506039384039006,0,0,0,0,0,0,0,0,4.63695509416885,4.54648332831962,3.76543450095277,0,0,0,0,0,0.144846518960824,0.795285947051099,0,0.283604451492204,0,0.087834785693126,0.392937226493138,0,0,0,0,0.26591592103773,0,0,0.371457501329565,0,0,0,0.56530794192401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0,0,0.354668382198357,0,0,0,0,0.134710672069688,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0,0.300091096084402,0,0,0,0.506328996723799,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.473227200159376,0.337169380156203,0.241011029883482,0.110293972732394,0,0.71181185733329,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0.088048434013226,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0.07333828582095,0.258543431515556,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0.560425719967636,3.54655368363469,3.23441362289276,3.9786341246722,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0,0,0,0,0.664225598535437,0.368738337083406,0,0,0,1.44737618286021,0.647142602455851,2.24127871387233,0,0,0,0.992431231275107,0.153461973288062,0,0.128139149255701,0,0.482561763430822,0,0,0.177561725313127,0,0.519254429183621,0.232420756919918,0,0.200506470303285,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0.647747748306418,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0,0.325378394664303,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0,0.286822704408103,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0.106824071127473,0.962479855263359,0.245040215981032,0,0,0,0.318852545457645,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49712432326576,0,0,0.111443384277478,0,0,0.296964680832639,0,0,0,0.111308705022906,0,0.844501632511974,0.398495976502139,0.276283915531148,0,0,0.123084805461069,0,0.179736702294654,0,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0.0874599999961957,0,0,0,0,0,0,0,0.885741385813839,0,0,0.110579259931225,1.18219047581419,0.219385397153973,0.32681539055697,0.278847488557207,0.153900517007594,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0.326465616318295,0,0,2.98578579323551,0.707660516026713,0,0,0.123563938946503,0.104421949505455,0.134802265961354,0,0.468528891450678,0,0,0,0,1.20990716048664,0.30607276163049,0.31593289814244,0,0.207376382794494,0,0,0,0,0,0,0,0.195984794828755,0,0.17472666824203,0,0.19351266257817,0.365446585430928,0.328461828212837,0,0,0,0,0,0.0633107959558787,0,0,0,0.19980960958213,0,0,0.171594997861965,0,0,0,0,0,0.305994652908965,0.288950589901519,0,0.136905378891993,0,0,0.525774708558629,0,0.229160424011684,0,0.199679000498991,0,0,0.0671834724867263,0,2.32991899054908,1.18174773460835,0.741742725430498,0.674035438541849,0,0,0,0,0.321506296930038,0.137539436597234,0,0,0.77380195455795,0.182248669974074,0.335434687599266,0.236417121897595,0.314727528809989,0.105600336519406,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.226624183040251,0.146552233678082,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0.314108192500469,0,0,0,0.573409195690071,0,0.496771223531068,0,0,0,0,0,0,0.144921028610825,0,0.233713309847224,0,0.189403005275089,0,0,0.228840068396924,0.151230923763239,0.466311601748341,0,0.318593534327405,0,0,0.414706207840855,0.265841714557995,0,0,0,0,0.181848659202559,0.429642228169954,0,0,0.800055529326307,0,0,1.26184898228651,0,0,0,0,0,0,0.179088841081487,0,0,0,0.192914038270915,0.168942440653073,0.512483037175893,0,0.303859956177382,0.138258436151731,0,0.132864840313363,0.163565394255844,0,0,0,0.19998739585493,0,0,0,0.184105950251841,0,0,0,0.215649622793364,0,0.109209638192014,0,0,0.123935764259002,0,0,0,0,0.705351887381368,0,0.128458450192919,0,0.159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| ||
|short_description=p3@SMAD7 | |short_description=p3@SMAD7 | ||
}} | }} |
Latest revision as of 17:01, 19 September 2015
Short description: | p3@SMAD7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMAD7_5end |
Coexpression cluster: | C8_Natural_CD8_Basophils_CD4_CD14_Peripheral_CD34 |
Association with transcript: | 286bp_to_AF015261_5end |
EntrezGene: | SMAD7 |
HGNC: | 6773 |
UniProt: | O15105 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 1.99e-19 | 3 |
pro-NK cell | 1.99e-19 | 3 |
basophil | 5.62e-19 | 3 |
lymphoid lineage restricted progenitor cell | 6.01e-12 | 52 |
leukocyte | 8.16e-12 | 136 |
lymphocyte | 1.10e-11 | 53 |
common lymphoid progenitor | 1.10e-11 | 53 |
mature alpha-beta T cell | 1.24e-11 | 18 |
alpha-beta T cell | 1.24e-11 | 18 |
immature T cell | 1.24e-11 | 18 |
mature T cell | 1.24e-11 | 18 |
immature alpha-beta T cell | 1.24e-11 | 18 |
nongranular leukocyte | 6.91e-10 | 115 |
CD4-positive, alpha-beta T cell | 2.53e-09 | 6 |
single nucleate cell | 5.85e-09 | 3 |
mononuclear cell | 5.85e-09 | 3 |
hematopoietic stem cell | 7.89e-09 | 168 |
T cell | 3.27e-08 | 25 |
pro-T cell | 3.27e-08 | 25 |
hematopoietic cell | 3.47e-08 | 177 |
granulocyte | 2.05e-07 | 8 |
hematopoietic oligopotent progenitor cell | 3.57e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.57e-07 | 161 |
hematopoietic lineage restricted progenitor cell | 6.86e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.21e-07 | 1 |
cranial nerve | 3.21e-07 | 1 |
nerve trunk | 3.21e-07 | 1 |
nerve connecting eye with brain | 3.21e-07 | 1 |
nerve | 3.21e-07 | 1 |
retinal neural layer | 3.21e-07 | 1 |
presumptive neural retina | 3.21e-07 | 1 |