FFCP PHASE1:Hg19::chr1:89664531..89664542,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=115361 | |EntrezGene=115361 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20480 | |HGNC=20480 | ||
|TSSclassifier=strong | |||
|UniProt=Q96PP9 | |UniProt=Q96PP9 | ||
|association_with_transcript=72bp_to_ENST00000355754_5end | |association_with_transcript=72bp_to_ENST00000355754_5end | ||
|cluster_id=chr1:89664531..89664542,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_3_at_GBP4_5end | |description=CAGE_peak_3_at_GBP4_5end | ||
|id=chr1:89664531..89664542,- | |id=chr1:89664531..89664542,- | ||
|ontology_enrichment_celltype=CL:0002057!2.92e-32!42;CL:0000860!5.76e-29!45;CL:0000766!3.33e-17!76;CL:0002194!1.45e-16!63;CL:0000576!1.45e-16!63;CL:0000040!1.45e-16!63;CL:0000559!1.45e-16!63;CL:0002009!1.32e-15!65;CL:0000839!3.28e-14!70;CL:0000557!4.39e-13!71;CL:0002087!5.60e-13!119;CL:0000738!8.19e-13!140;CL:0002031!2.37e-10!124;CL:0000037!1.49e-09!172;CL:0000566!1.49e-09!172;CL:0000763!2.02e-09!112;CL:0000049!2.02e-09!112;CL:0000988!4.59e-09!182;CL:0002393!2.39e-08!9;CL:0002397!2.39e-08!9;CL:0002032!2.96e-08!165;CL:0000837!2.96e-08!165 | |ontology_enrichment_celltype=CL:0002057!2.92e-32!42;CL:0000860!5.76e-29!45;CL:0000766!3.33e-17!76;CL:0002194!1.45e-16!63;CL:0000576!1.45e-16!63;CL:0000040!1.45e-16!63;CL:0000559!1.45e-16!63;CL:0002009!1.32e-15!65;CL:0000839!3.28e-14!70;CL:0000557!4.39e-13!71;CL:0002087!5.60e-13!119;CL:0000738!8.19e-13!140;CL:0002031!2.37e-10!124;CL:0000037!1.49e-09!172;CL:0000566!1.49e-09!172;CL:0000763!2.02e-09!112;CL:0000049!2.02e-09!112;CL:0000988!4.59e-09!182;CL:0002393!2.39e-08!9;CL:0002397!2.39e-08!9;CL:0002032!2.96e-08!165;CL:0000837!2.96e-08!165 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.19e-37;33!CL:0002057;2.19e-37;33!CL:0000576;3.16e-25;48!CL:0000473;1.41e-24;39!CL:0000234;1.41e-24;39!CL:0000766;6.06e-15;69!CL:0000763;8.74e-10;100!CL:0002087;9.83e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.86e-45,42;CL:0002057,1.86e-45,42;CL:0000473,5.73e-39,48;CL:0000234,5.73e-39,48;CL:0000766,2.83e-30,72;CL:0002194,6.83e-30,59;CL:0000576,6.83e-30,59;CL:0000040,6.83e-30,59;CL:0000559,6.83e-30,59;CL:0002009,1.01e-28,61;CL:0000839,4.18e-26,66;CL:0000557,1.25e-25,67;CL:0000763,1.31e-19,108;CL:0000049,1.31e-19,108;CL:0000738,1.04e-16,136;CL:0002087,1.67e-16,115;CL:0002031,1.54e-15,120;CL:0002032,3.73e-14,161;CL:0000837,3.73e-14,161;CL:0000037,2.96e-13,168;CL:0000988,3.33e-12,177 | |||
|ontology_enrichment_development_v019=CL:0002057;5.21e-33;42!CL:0000049;3.60e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.87e-16!115;UBERON:0002193!2.94e-16!112;UBERON:0002390!3.19e-14!102;UBERON:0003061!3.19e-14!102;UBERON:0002405!2.27e-11!115;UBERON:0002371!7.51e-11!80;UBERON:0001474!3.50e-09!86;UBERON:0003081!4.79e-08!216;UBERON:0004765!6.89e-07!101;UBERON:0001434!6.89e-07!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.75e-22,76;UBERON:0001474,7.31e-20,82;UBERON:0002390,9.60e-19,98;UBERON:0003061,9.60e-19,98;UBERON:0002405,1.84e-18,93;UBERON:0004765,1.42e-17,90;UBERON:0002193,2.04e-16,108;UBERON:0001434,3.15e-15,100;UBERON:0003081,2.17e-11,203;UBERON:0002204,3.24e-11,167 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0.993374274723366,0.656804715599566,1.33808328233255,1.18009283054671,1.15148819429164,0.464448369948228,0,0,0,0,0,0.587200878669695,1.66198622559563,0.401088894940283,1.08505435357926,0,0.32389366601898,0,0.436194716338694,1.13362783106643,0.485168122375632,0.232429036905685,0,0.309706370895104,25.6046229166714,19.4682136962116,24.8306341383014,0.689491361473237,0.645484683583826,1.35426486594342,0.376484679085209,0,0.674170453335254,4.59125838556354,2.56743221660875,1.27867425159808,33.9746839192318,22.5393933112444,33.2455305415501,10.7377418292576,6.24123747160254,7.4738669879469,11.5574386018102,10.9511412868242,14.986030284653,12.7133895553007,4.41933163185078,11.7091083353127,0.422510572623884,0.637812899895131,1.46761051855863,0.112328631146495,0.600707571366025,0.48217676009124,0.570025487482497,0.99458338599545,1.27864907635244,0,0,0,0,0,0,0,0,0,0.587237189370939,0,3.96513985737078,1.68152568894461,0,0.196709770113833,0.393010762749165,0,0,0,0,0,0.222820913770347,0,0,0,0.25618263945135,0.260118695119756,0,0,0,0.14828656316206,0.267540828089713,0,0.113309342697566,0,0.34362744548263,0.506039384039006,0,0,0,0,0,0,0.236777252044017,0,0.403213486449465,0,0.144824403882799,0,0.670700859703636,0,0.361439152384566,0,0,0,0,0,0,0,1.17881167947941,0,0,0,0,0,0,0.571994910780128,0,0.198762407366705,0,0,0,0,0.275118041940067,0,0.258416759169329,0.71153252537342,0.33472061276467,0,0,0,0,0,0.267899184852239,0,0.112611480483322,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,1.06748995729705,0,0.622422070799533,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0.646584227275248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.288732895522148,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.797814349754612,2.08014873822732,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.431255149719035,0.256686072559497,0,0,0,0,0,0.749007023947182,2.99161459204025,0.828831026872071,0,0,0,0.415941723061614,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,0.533637789017222,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84820148105653,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21856744815642,0,0.409499734223957,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,1.01489521846434,0,0,0.238231775457789,0,0.648473311192717,0,0.79312517629427,0,0,0,0,0.577076851905779,0,0,0,0.191505370132367,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,1.46508179271894,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0,0,0,0,0.123084805461069,0,0.0898683511473268,0,0,0.591860433821602,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.87754158861589,0,0,0.0769502585037971,0,0,0,0,0,1.19076871422421,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.973033209536731,0.611030144933625,0.296521128680622,0,0.104421949505455,0.539209063845416,0,0,0,0,0,0.394584402849391,0,0,1.64285107034069,0,0,0,0.330991955875499,0,0,0,0,0,0.489961987071888,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,0.677942222341597,0,0,0.253243183823515,0,0.0801588202515337,0.213452994739353,0.799238438328521,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0.429765441419957,0,0.558564802544508,0.229160424011684,0,0,0,0.446342914883745,0.403100834920358,0,0,0,0,0,0,2.62487329403932,0,0,0,0,0,0,0,0.425246896606173,0,0.788057072991982,0.314727528809989,0,0,0,1.42939065274673,1.32418394073086,0,0,0,0,0,2.70905318472819,0,1.01980882368113,0.439656701034247,0,0.258565912723101,0,0,0,1.81538601365081,0.943225830597996,0.828478110694391,0.496166021811951,0.197611631897944,0,0.638341257770182,0,1.0027595760908,0,0.327872630709804,0,0,0.122026264901963,0,0,0.221858103073705,1.1177352529449,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0.192619830407303,0,0,0.680117776536817,0.694567422971502,0.97894681802587,0.358177682162975,0,0,0,0,0.337884881306145,0,0,0.607719912354764,0.138258436151731,0,0,0,0,0.245772908753719,0,0.79994958341972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0.385375350578757,0,0,0.205116364240755,0,0.484100767249525,0.322951291263702,0,0,0,0,0.115525666150338,0,0,0,0.977734268540344,0,0,0,0,0.147856086217045,0.607838261565552,0.781078098613847,0.206686796501184,0.19024743058172,0,0,0,0,0.255524855279191,0,0,0,0.227662191351298,0.532214220975833,1.26757386311357,1.71488009437418,0.203909198930495,0.263091094251396,0,0,0.863424021355654,0,0,0,0,1.9110067515482,1.35805433935647,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0.196300467230486,0,0,1.33461648913121,0,0,0,0,0,0,0,0,1.62065732026684,0.655678681511872,0,0,0,0.392616934229891,0.297046400327086,0,0,1.59772660565751,0.709036767709349,0.299823467774787,0,0,0,0,0,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0.253397002022874,0,0,0,0,0.378893491091197,0.267964130156178,0,0.103432995861895,0.213233981900981,0.476128862927481,0.193766729508018,0.124149428591716,0.112131862580613,2.99141643907375,0.404234377916439,0,0,0.471464371102113,1.07583308089015,0.332660356546013,0.162806537221949,0.106727345877715,0,0.179650404213174,0,0.611207220914332,0.406896178315738,0.665756774185513,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0.993374274723366,0.656804715599566,1.33808328233255,1.18009283054671,1.15148819429164,0.464448369948228,0,0,0,0,0,0.587200878669695,1.66198622559563,0.401088894940283,1.08505435357926,0,0.32389366601898,0,0.436194716338694,1.13362783106643,0.485168122375632,0.232429036905685,0,0.309706370895104,25.6046229166714,19.4682136962116,24.8306341383014,0.689491361473237,0.645484683583826,1.35426486594342,0.376484679085209,0,0.674170453335254,4.59125838556354,2.56743221660875,1.27867425159808,33.9746839192318,22.5393933112444,33.2455305415501,10.7377418292576,6.24123747160254,7.4738669879469,11.5574386018102,10.9511412868242,14.986030284653,12.7133895553007,4.41933163185078,11.7091083353127,0.422510572623884,0.637812899895131,1.46761051855863,0.112328631146495,0.600707571366025,0.48217676009124,0.570025487482497,0.99458338599545,1.27864907635244,0,0,0,0,0,0,0,0,0,0.587237189370939,0,3.96513985737078,1.68152568894461,0,0.196709770113833,0.393010762749165,0,0,0,0,0,0.222820913770347,0,0,0,0.25618263945135,0.260118695119756,0,0,0,0.14828656316206,0.267540828089713,0,0.113309342697566,0,0.34362744548263,0.506039384039006,0,0,0,0,0,0,0.236777252044017,0,0.403213486449465,0,0.144824403882799,0,0.670700859703636,0,0.361439152384566,0,0,0,0,0,0,0,1.17881167947941,0,0,0,0,0,0,0.571994910780128,0,0.198762407366705,0,0,0,0,0.275118041940067,0,0.258416759169329,0.71153252537342,0.33472061276467,0,0,0,0,0,0.267899184852239,0,0.112611480483322,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0,0,1.06748995729705,0,0.622422070799533,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0.646584227275248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0.288732895522148,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.797814349754612,2.08014873822732,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.431255149719035,0.256686072559497,0,0,0,0,0,0.749007023947182,2.99161459204025,0.828831026872071,0,0,0,0.415941723061614,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,0.533637789017222,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0.431831832204279,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84820148105653,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21856744815642,0,0.409499734223957,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,1.01489521846434,0,0,0.238231775457789,0,0.648473311192717,0,0.79312517629427,0,0,0,0,0.577076851905779,0,0,0,0.191505370132367,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,1.46508179271894,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0,0,0,0,0.123084805461069,0,0.0898683511473268,0,0,0.591860433821602,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.87754158861589,0,0,0.0769502585037971,0,0,0,0,0,1.19076871422421,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.973033209536731,0.611030144933625,0.296521128680622,0,0.104421949505455,0.539209063845416,0,0,0,0,0,0.394584402849391,0,0,1.64285107034069,0,0,0,0.330991955875499,0,0,0,0,0,0.489961987071888,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,0.677942222341597,0,0,0.253243183823515,0,0.0801588202515337,0.213452994739353,0.799238438328521,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0.429765441419957,0,0.558564802544508,0.229160424011684,0,0,0,0.446342914883745,0.403100834920358,0,0,0,0,0,0,2.62487329403932,0,0,0,0,0,0,0,0.425246896606173,0,0.788057072991982,0.314727528809989,0,0,0,1.42939065274673,1.32418394073086,0,0,0,0,0,2.70905318472819,0,1.01980882368113,0.439656701034247,0,0.258565912723101,0,0,0,1.81538601365081,0.943225830597996,0.828478110694391,0.496166021811951,0.197611631897944,0,0.638341257770182,0,1.0027595760908,0,0.327872630709804,0,0,0.122026264901963,0,0,0.221858103073705,1.1177352529449,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0.192619830407303,0,0,0.680117776536817,0.694567422971502,0.97894681802587,0.358177682162975,0,0,0,0,0.337884881306145,0,0,0.607719912354764,0.138258436151731,0,0,0,0,0.245772908753719,0,0.79994958341972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.6124909547064,0.385375350578757,0,0,0.205116364240755,0,0.484100767249525,0.322951291263702,0,0,0,0,0.115525666150338,0,0,0,0.977734268540344,0,0,0,0,0.147856086217045,0.607838261565552,0.781078098613847,0.206686796501184,0.19024743058172,0,0,0,0,0.255524855279191,0,0,0,0.227662191351298,0.532214220975833,1.26757386311357,1.71488009437418,0.203909198930495,0.263091094251396,0,0,0.863424021355654,0,0,0,0,1.9110067515482,1.35805433935647,0,0,0,0,0,0,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0.196300467230486,0,0,1.33461648913121,0,0,0,0,0,0,0,0,1.62065732026684,0.655678681511872,0,0,0,0.392616934229891,0.297046400327086,0,0,1.59772660565751,0.709036767709349,0.299823467774787,0,0,0,0,0,0,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0.253397002022874,0,0,0,0,0.378893491091197,0.267964130156178,0,0.103432995861895,0.213233981900981,0.476128862927481,0.193766729508018,0.124149428591716,0.112131862580613,2.99141643907375,0.404234377916439,0,0,0.471464371102113,1.07583308089015,0.332660356546013,0.162806537221949,0.106727345877715,0,0.179650404213174,0,0.611207220914332,0.406896178315738,0.665756774185513,0.402547587182052,0 | ||
|short_description=p3@GBP4 | |short_description=p3@GBP4 | ||
}} | }} |
Latest revision as of 16:46, 19 September 2015
Short description: | p3@GBP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GBP4_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 72bp_to_ENST00000355754_5end |
EntrezGene: | GBP4 |
HGNC: | 20480 |
UniProt: | Q96PP9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.86e-45 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.86e-45 | 42 |
defensive cell | 5.73e-39 | 48 |
phagocyte | 5.73e-39 | 48 |
myeloid leukocyte | 2.83e-30 | 72 |
monopoietic cell | 6.83e-30 | 59 |
monocyte | 6.83e-30 | 59 |
monoblast | 6.83e-30 | 59 |
promonocyte | 6.83e-30 | 59 |
macrophage dendritic cell progenitor | 1.01e-28 | 61 |
myeloid lineage restricted progenitor cell | 4.18e-26 | 66 |
granulocyte monocyte progenitor cell | 1.25e-25 | 67 |
myeloid cell | 1.31e-19 | 108 |
common myeloid progenitor | 1.31e-19 | 108 |
leukocyte | 1.04e-16 | 136 |
nongranular leukocyte | 1.67e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 1.54e-15 | 120 |
hematopoietic oligopotent progenitor cell | 3.73e-14 | 161 |
hematopoietic multipotent progenitor cell | 3.73e-14 | 161 |
hematopoietic stem cell | 2.96e-13 | 168 |
hematopoietic cell | 3.33e-12 | 177 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.75e-22 | 76 |
bone element | 7.31e-20 | 82 |
hematopoietic system | 9.60e-19 | 98 |
blood island | 9.60e-19 | 98 |
immune system | 1.84e-18 | 93 |
skeletal element | 1.42e-17 | 90 |
hemolymphoid system | 2.04e-16 | 108 |
skeletal system | 3.15e-15 | 100 |
lateral plate mesoderm | 2.17e-11 | 203 |
musculoskeletal system | 3.24e-11 | 167 |