FFCP PHASE1:Hg19::chr2:20550556..20550614,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23369 | |EntrezGene=23369 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14958 | |HGNC=14958 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000420234_5end | |association_with_transcript=0bp_to_ENST00000420234_5end | ||
|cluster_id=chr2:20550556..20550614,- | |||
|description=CAGE_peak_1_at_PUM2_5end | |description=CAGE_peak_1_at_PUM2_5end | ||
|id=chr2:20550556..20550614,- | |id=chr2:20550556..20550614,- | ||
|ontology_enrichment_celltype=CL:0000738!4.14e-19!140;CL:0000037!9.69e-18!172;CL:0000566!9.69e-18!172;CL:0002032!4.90e-16!165;CL:0000837!4.90e-16!165;CL:0000988!7.66e-16!182;CL:0002031!1.87e-15!124;CL:0002087!1.26e-14!119;CL:0000766!2.40e-09!76;CL:0000838!3.95e-09!52;CL:0000542!7.94e-09!53;CL:0000051!7.94e-09!53;CL:0000763!3.81e-08!112;CL:0000049!3.81e-08!112;CL:0000557!3.40e-07!71;CL:0000839!4.30e-07!70;CL:0000791!4.34e-07!18;CL:0000789!4.34e-07!18;CL:0002420!4.34e-07!18;CL:0002419!4.34e-07!18;CL:0000790!4.34e-07!18 | |ontology_enrichment_celltype=CL:0000738!4.14e-19!140;CL:0000037!9.69e-18!172;CL:0000566!9.69e-18!172;CL:0002032!4.90e-16!165;CL:0000837!4.90e-16!165;CL:0000988!7.66e-16!182;CL:0002031!1.87e-15!124;CL:0002087!1.26e-14!119;CL:0000766!2.40e-09!76;CL:0000838!3.95e-09!52;CL:0000542!7.94e-09!53;CL:0000051!7.94e-09!53;CL:0000763!3.81e-08!112;CL:0000049!3.81e-08!112;CL:0000557!3.40e-07!71;CL:0000839!4.30e-07!70;CL:0000791!4.34e-07!18;CL:0000789!4.34e-07!18;CL:0002420!4.34e-07!18;CL:0002419!4.34e-07!18;CL:0000790!4.34e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.95e-07;18!CL:0000789;3.95e-07;18!CL:0002419;3.95e-07;18 | |ontology_enrichment_celltype_v019=CL:0000791;3.95e-07;18!CL:0000789;3.95e-07;18!CL:0002419;3.95e-07;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.28e-20,136;CL:0000037,8.97e-19,168;CL:0000988,2.76e-17,177;CL:0002032,5.00e-17,161;CL:0000837,5.00e-17,161;CL:0002031,1.24e-16,120;CL:0002087,8.63e-16,115;CL:0000766,1.72e-10,72;CL:0000838,3.95e-09,52;CL:0000763,6.20e-09,108;CL:0000049,6.20e-09,108;CL:0000542,7.94e-09,53;CL:0000051,7.94e-09,53;CL:0000557,3.56e-08,67;CL:0000839,4.52e-08,66;CL:0000791,4.34e-07,18;CL:0000789,4.34e-07,18;CL:0002420,4.34e-07,18;CL:0002419,4.34e-07,18;CL:0000790,4.34e-07,18;CL:0002009,5.56e-07,61;CL:0002194,9.43e-07,59;CL:0000576,9.43e-07,59;CL:0000040,9.43e-07,59;CL:0000559,9.43e-07,59 | |||
|ontology_enrichment_development_v019=CL:0000790;3.95e-07;18 | |ontology_enrichment_development_v019=CL:0000790;3.95e-07;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.44e-22!115;UBERON:0002390!6.35e-11!102;UBERON:0003061!6.35e-11!102;UBERON:0002193!7.63e-10!112;UBERON:0002780!8.14e-10!41;UBERON:0001890!8.14e-10!41;UBERON:0006240!8.14e-10!41;UBERON:0003080!1.31e-09!42;UBERON:0001049!7.13e-09!57;UBERON:0005068!7.13e-09!57;UBERON:0006241!7.13e-09!57;UBERON:0007135!7.13e-09!57;UBERON:0000178!1.09e-08!15;UBERON:0000179!1.09e-08!15;UBERON:0000463!1.09e-08!15;UBERON:0001893!2.90e-08!34;UBERON:0002616!3.53e-08!59;UBERON:0000073!4.53e-08!94;UBERON:0001016!4.53e-08!94;UBERON:0002791!4.74e-08!33;UBERON:0002020!5.22e-08!34;UBERON:0003528!5.22e-08!34;UBERON:0001017!7.88e-08!82;UBERON:0000955!1.14e-07!69;UBERON:0006238!1.14e-07!69;UBERON:0001869!1.31e-07!32;UBERON:0005743!1.74e-07!86;UBERON:0000956!3.36e-07!25;UBERON:0000203!3.36e-07!25 | |ontology_enrichment_uberon=UBERON:0007023!1.44e-22!115;UBERON:0002390!6.35e-11!102;UBERON:0003061!6.35e-11!102;UBERON:0002193!7.63e-10!112;UBERON:0002780!8.14e-10!41;UBERON:0001890!8.14e-10!41;UBERON:0006240!8.14e-10!41;UBERON:0003080!1.31e-09!42;UBERON:0001049!7.13e-09!57;UBERON:0005068!7.13e-09!57;UBERON:0006241!7.13e-09!57;UBERON:0007135!7.13e-09!57;UBERON:0000178!1.09e-08!15;UBERON:0000179!1.09e-08!15;UBERON:0000463!1.09e-08!15;UBERON:0001893!2.90e-08!34;UBERON:0002616!3.53e-08!59;UBERON:0000073!4.53e-08!94;UBERON:0001016!4.53e-08!94;UBERON:0002791!4.74e-08!33;UBERON:0002020!5.22e-08!34;UBERON:0003528!5.22e-08!34;UBERON:0001017!7.88e-08!82;UBERON:0000955!1.14e-07!69;UBERON:0006238!1.14e-07!69;UBERON:0001869!1.31e-07!32;UBERON:0005743!1.74e-07!86;UBERON:0000956!3.36e-07!25;UBERON:0000203!3.36e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.13e-08;15!UBERON:0000179;1.13e-08;15!UBERON:0000463;1.13e-08;15!UBERON:0002780;9.82e-08;41!UBERON:0001890;9.82e-08;41!UBERON:0000956;4.08e-07;25!UBERON:0000203;4.08e-07;25!UBERON:0001893;5.16e-07;34!UBERON:0002791;5.67e-07;32!UBERON:0001869;7.46e-07;32 | |ontology_enrichment_uberon_v019=UBERON:0000178;1.13e-08;15!UBERON:0000179;1.13e-08;15!UBERON:0000463;1.13e-08;15!UBERON:0002780;9.82e-08;41!UBERON:0001890;9.82e-08;41!UBERON:0000956;4.08e-07;25!UBERON:0000203;4.08e-07;25!UBERON:0001893;5.16e-07;34!UBERON:0002791;5.67e-07;32!UBERON:0001869;7.46e-07;32 | ||
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| ||
|short_description=p1@PUM2 | |short_description=p1@PUM2 | ||
}} | }} |
Latest revision as of 16:40, 19 September 2015
Short description: | p1@PUM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PUM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000420234_5end |
EntrezGene: | PUM2 |
HGNC: | 14958 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.28e-20 | 136 |
hematopoietic stem cell | 8.97e-19 | 168 |
hematopoietic cell | 2.76e-17 | 177 |
hematopoietic oligopotent progenitor cell | 5.00e-17 | 161 |
hematopoietic multipotent progenitor cell | 5.00e-17 | 161 |
hematopoietic lineage restricted progenitor cell | 1.24e-16 | 120 |
nongranular leukocyte | 8.63e-16 | 115 |
myeloid leukocyte | 1.72e-10 | 72 |
lymphoid lineage restricted progenitor cell | 3.95e-09 | 52 |
myeloid cell | 6.20e-09 | 108 |
common myeloid progenitor | 6.20e-09 | 108 |
lymphocyte | 7.94e-09 | 53 |
common lymphoid progenitor | 7.94e-09 | 53 |
granulocyte monocyte progenitor cell | 3.56e-08 | 67 |
myeloid lineage restricted progenitor cell | 4.52e-08 | 66 |
mature alpha-beta T cell | 4.34e-07 | 18 |
alpha-beta T cell | 4.34e-07 | 18 |
immature T cell | 4.34e-07 | 18 |
mature T cell | 4.34e-07 | 18 |
immature alpha-beta T cell | 4.34e-07 | 18 |
macrophage dendritic cell progenitor | 5.56e-07 | 61 |
monopoietic cell | 9.43e-07 | 59 |
monocyte | 9.43e-07 | 59 |
monoblast | 9.43e-07 | 59 |
promonocyte | 9.43e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
adult organism | 3.87e-22 | 114 |
hematopoietic system | 5.72e-12 | 98 |
blood island | 5.72e-12 | 98 |
hemolymphoid system | 9.45e-11 | 108 |
regional part of forebrain | 8.14e-10 | 41 |
forebrain | 8.14e-10 | 41 |
anterior neural tube | 8.14e-10 | 41 |
future forebrain | 8.14e-10 | 41 |
neural tube | 5.16e-09 | 56 |
neural rod | 5.16e-09 | 56 |
future spinal cord | 5.16e-09 | 56 |
neural keel | 5.16e-09 | 56 |
blood | 1.09e-08 | 15 |
haemolymphatic fluid | 1.09e-08 | 15 |
organism substance | 1.09e-08 | 15 |
regional part of nervous system | 1.55e-08 | 53 |
regional part of brain | 1.55e-08 | 53 |
nervous system | 1.72e-08 | 89 |
telencephalon | 2.90e-08 | 34 |
brain grey matter | 5.22e-08 | 34 |
gray matter | 5.22e-08 | 34 |
central nervous system | 6.48e-08 | 81 |
brain | 9.10e-08 | 68 |
future brain | 9.10e-08 | 68 |
regional part of telencephalon | 9.43e-08 | 32 |
cerebral hemisphere | 1.31e-07 | 32 |
cerebral cortex | 3.36e-07 | 25 |
pallium | 3.36e-07 | 25 |