FFCP PHASE1:Hg19::chr19:52298453..52298460,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2359 | |EntrezGene=2359 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3828 | |HGNC=3828 | ||
|TSSclassifier=strong | |||
|UniProt=P25089,Q6L5J4 | |UniProt=P25089,Q6L5J4 | ||
|association_with_transcript=42bp_to_ENST00000339223,NM_002030,uc002pxt.1_5end | |association_with_transcript=42bp_to_ENST00000339223,NM_002030,uc002pxt.1_5end | ||
|cluster_id=chr19:52298453..52298460,+ | |||
|coexpression_cluster_id=C847 | |coexpression_cluster_id=C847 | ||
|description=CAGE_peak_3_at_FPR3_5end | |description=CAGE_peak_3_at_FPR3_5end | ||
|id=chr19:52298453..52298460,+ | |id=chr19:52298453..52298460,+ | ||
|ontology_enrichment_celltype=CL:0000557!8.25e-61!71;CL:0002009!3.59e-57!65;CL:0000839!5.12e-55!70;CL:0002194!2.59e-52!63;CL:0000576!2.59e-52!63;CL:0000040!2.59e-52!63;CL:0000559!2.59e-52!63;CL:0000766!6.45e-50!76;CL:0002057!3.18e-44!42;CL:0000860!8.81e-41!45;CL:0000763!7.41e-37!112;CL:0000049!7.41e-37!112;CL:0002031!3.03e-32!124;CL:0000738!2.36e-27!140;CL:0002087!5.38e-25!119;CL:0002032!5.69e-23!165;CL:0000837!5.69e-23!165;CL:0000037!1.33e-21!172;CL:0000566!1.33e-21!172;CL:0000988!7.89e-20!182;CL:0000840!9.10e-14!5;CL:0001029!9.10e-14!5;CL:0000990!4.96e-09!8;CL:0000235!3.80e-08!10;CL:0001014!1.32e-07!2;CL:0001016!1.32e-07!2;CL:0000451!2.63e-07!10 | |ontology_enrichment_celltype=CL:0000557!8.25e-61!71;CL:0002009!3.59e-57!65;CL:0000839!5.12e-55!70;CL:0002194!2.59e-52!63;CL:0000576!2.59e-52!63;CL:0000040!2.59e-52!63;CL:0000559!2.59e-52!63;CL:0000766!6.45e-50!76;CL:0002057!3.18e-44!42;CL:0000860!8.81e-41!45;CL:0000763!7.41e-37!112;CL:0000049!7.41e-37!112;CL:0002031!3.03e-32!124;CL:0000738!2.36e-27!140;CL:0002087!5.38e-25!119;CL:0002032!5.69e-23!165;CL:0000837!5.69e-23!165;CL:0000037!1.33e-21!172;CL:0000566!1.33e-21!172;CL:0000988!7.89e-20!182;CL:0000840!9.10e-14!5;CL:0001029!9.10e-14!5;CL:0000990!4.96e-09!8;CL:0000235!3.80e-08!10;CL:0001014!1.32e-07!2;CL:0001016!1.32e-07!2;CL:0000451!2.63e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000473;1.72e-48;39!CL:0000234;1.72e-48;39!CL:0000235;1.37e-39;6!CL:0000840;4.36e-39;5!CL:0000860;1.15e-31;33!CL:0002057;1.15e-31;33!CL:0000990;4.43e-26;8!CL:0000451;2.44e-21;10!CL:0001014;8.71e-20;2!CL:0001016;8.71e-20;2!CL:0000766;5.26e-15;69!CL:0000576;7.30e-15;48!CL:0000738;2.31e-11;136!CL:0000763;1.35e-08;100!CL:0000453;1.79e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.45e-64,61;CL:0000557,1.22e-58,67;CL:0002194,2.34e-54,59;CL:0000576,2.34e-54,59;CL:0000040,2.34e-54,59;CL:0000559,2.34e-54,59;CL:0000839,2.06e-48,66;CL:0000473,3.60e-48,48;CL:0000234,3.60e-48,48;CL:0000766,3.20e-44,72;CL:0000235,1.68e-39,6;CL:0000840,3.72e-39,5;CL:0001029,3.72e-39,5;CL:0000763,1.35e-35,108;CL:0000049,1.35e-35,108;CL:0002031,8.50e-32,120;CL:0000738,9.17e-28,136;CL:0002087,7.57e-27,115;CL:0000990,4.00e-26,8;CL:0000860,9.23e-26,42;CL:0002057,9.23e-26,42;CL:0002032,4.74e-23,161;CL:0000837,4.74e-23,161;CL:0000037,5.58e-22,168;CL:0000451,2.24e-21,10;CL:0000988,1.00e-20,177;CL:0001014,9.60e-20,2;CL:0001016,9.60e-20,2;CL:0000134,6.59e-09,354;CL:0002320,1.13e-08,361;CL:0000453,1.86e-08,5;CL:0000219,7.44e-08,386;CL:0000048,7.57e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;2.67e-17;42!CL:0000049;1.60e-13;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!7.62e-53!80;UBERON:0001474!1.88e-48!86;UBERON:0002390!6.64e-46!102;UBERON:0003061!6.64e-46!102;UBERON:0002193!2.83e-45!112;UBERON:0002405!8.42e-44!115;UBERON:0004765!9.78e-40!101;UBERON:0001434!9.78e-40!101;UBERON:0002204!7.62e-24!167;UBERON:0003081!4.76e-18!216;UBERON:0000062!1.35e-08!511;UBERON:0000926!1.44e-08!448;UBERON:0004120!1.44e-08!448;UBERON:0006603!1.44e-08!448 | |ontology_enrichment_uberon=UBERON:0002371!7.62e-53!80;UBERON:0001474!1.88e-48!86;UBERON:0002390!6.64e-46!102;UBERON:0003061!6.64e-46!102;UBERON:0002193!2.83e-45!112;UBERON:0002405!8.42e-44!115;UBERON:0004765!9.78e-40!101;UBERON:0001434!9.78e-40!101;UBERON:0002204!7.62e-24!167;UBERON:0003081!4.76e-18!216;UBERON:0000062!1.35e-08!511;UBERON:0000926!1.44e-08!448;UBERON:0004120!1.44e-08!448;UBERON:0006603!1.44e-08!448 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.74e-51,76;UBERON:0001474,1.41e-47,82;UBERON:0004765,3.66e-43,90;UBERON:0002405,1.06e-41,93;UBERON:0002390,1.84e-39,98;UBERON:0003061,1.84e-39,98;UBERON:0001434,1.26e-38,100;UBERON:0002193,1.35e-35,108;UBERON:0002204,3.97e-22,167;UBERON:0003081,1.01e-17,203;UBERON:0000926,2.18e-10,315;UBERON:0004120,2.18e-10,315;UBERON:0006603,2.18e-10,315;UBERON:0002384,2.34e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,4.21654892460738,2.26725566213286,2.66842467306598,0.464858073811369,0.411167888021826,0.619412741790207,0.28769239232215,0.512321413058201,0.236482229888585,0.689491361473237,1.29096936716765,0,3.9530891303947,3.547779950752,2.47195832889593,1.83650335422542,2.24650318953266,2.55734850319616,0.659702600373432,0.797854630486527,1.70489900213078,0.580418477257168,0,0.622822248995575,0,0,0.217188844705117,0.605399502633369,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,2.27183175558278,1.74129737299267,2.6591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.18568910348575,1.63802985597466,3.56714789492948,0,0,0,0,0,0,0,0,0.207328115540772,0.720599767084807,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,1.2162378064119,2.51128545716063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4747128070665,1.5476039091159,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.328370082997356,0,0,0,0,0,0.13223260174269,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0.245148321753905,0,0,0,0,0,0.281951753939561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0.202056159043763,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,4.21654892460738,2.26725566213286,2.66842467306598,0.464858073811369,0.411167888021826,0.619412741790207,0.28769239232215,0.512321413058201,0.236482229888585,0.689491361473237,1.29096936716765,0,3.9530891303947,3.547779950752,2.47195832889593,1.83650335422542,2.24650318953266,2.55734850319616,0.659702600373432,0.797854630486527,1.70489900213078,0.580418477257168,0,0.622822248995575,0,0,0.217188844705117,0.605399502633369,0.368277635987565,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,2.27183175558278,1.74129737299267,2.6591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.18568910348575,1.63802985597466,3.56714789492948,0,0,0,0,0,0,0,0,0.207328115540772,0.720599767084807,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0,1.2162378064119,2.51128545716063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4747128070665,1.5476039091159,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0.328370082997356,0,0,0,0,0,0.13223260174269,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.154348316215889,0.218559560503957,0,0.245148321753905,0,0,0,0,0,0.281951753939561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0.202056159043763,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | ||
|short_description=p3@FPR3 | |short_description=p3@FPR3 | ||
}} | }} |
Latest revision as of 16:20, 19 September 2015
Short description: | p3@FPR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FPR3_5end |
Coexpression cluster: | C847_Monocytederived_CD14_Macrophage_Dendritic_immature_adipose_lung |
Association with transcript: | 42bp_to_ENST00000339223, NM_002030, uc002pxt.1_5end |
EntrezGene: | FPR3 |
HGNC: | 3828 |
UniProt: | P25089Q6L5J4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.74e-51 | 76 |
bone element | 1.41e-47 | 82 |
skeletal element | 3.66e-43 | 90 |
immune system | 1.06e-41 | 93 |
hematopoietic system | 1.84e-39 | 98 |
blood island | 1.84e-39 | 98 |
skeletal system | 1.26e-38 | 100 |
hemolymphoid system | 1.35e-35 | 108 |
musculoskeletal system | 3.97e-22 | 167 |
lateral plate mesoderm | 1.01e-17 | 203 |
mesoderm | 2.18e-10 | 315 |
mesoderm-derived structure | 2.18e-10 | 315 |
presumptive mesoderm | 2.18e-10 | 315 |
connective tissue | 2.34e-08 | 371 |