FFCP PHASE1:Hg19::chr2:204732682..204732693,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1493 | |EntrezGene=1493 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2505 | |HGNC=2505 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=16bp_to_ENST00000487393_5end | |association_with_transcript=16bp_to_ENST00000487393_5end | ||
|cluster_id=chr2:204732682..204732693,+ | |||
|coexpression_cluster_id=C103 | |||
|description=CAGE_peak_4_at_CTLA4_5end | |description=CAGE_peak_4_at_CTLA4_5end | ||
|id=chr2:204732682..204732693,+ | |id=chr2:204732682..204732693,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.56e-21!18;CL:0000789!1.56e-21!18;CL:0002420!1.56e-21!18;CL:0002419!1.56e-21!18;CL:0000790!1.56e-21!18;CL:0000084!6.80e-17!25;CL:0000827!6.80e-17!25;CL:0000624!1.02e-16!6;CL:0000838!3.13e-11!52;CL:0000542!6.21e-11!53;CL:0000051!6.21e-11!53;CL:0000625!6.83e-10!11;CL:0002087!8.44e-10!119;CL:0000738!1.31e-09!140;CL:0000898!2.12e-09!3;CL:0000842!8.60e-09!3;CL:0000623!2.51e-08!3;CL:0000825!2.51e-08!3;CL:0000815!6.42e-07!2;CL:0000792!6.42e-07!2;CL:0002677!6.42e-07!2 | |ontology_enrichment_celltype=CL:0000791!1.56e-21!18;CL:0000789!1.56e-21!18;CL:0002420!1.56e-21!18;CL:0002419!1.56e-21!18;CL:0000790!1.56e-21!18;CL:0000084!6.80e-17!25;CL:0000827!6.80e-17!25;CL:0000624!1.02e-16!6;CL:0000838!3.13e-11!52;CL:0000542!6.21e-11!53;CL:0000051!6.21e-11!53;CL:0000625!6.83e-10!11;CL:0002087!8.44e-10!119;CL:0000738!1.31e-09!140;CL:0000898!2.12e-09!3;CL:0000842!8.60e-09!3;CL:0000623!2.51e-08!3;CL:0000825!2.51e-08!3;CL:0000815!6.42e-07!2;CL:0000792!6.42e-07!2;CL:0002677!6.42e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000624;2.80e-40;6!CL:0000898;1.29e-21;3!CL:0000226;6.05e-20;3!CL:0000842;6.05e-20;3!CL:0000791;1.47e-17;18!CL:0000789;1.47e-17;18!CL:0002419;1.47e-17;18!CL:0000815;2.80e-15;2!CL:0000792;2.80e-15;2!CL:0002677;2.80e-15;2!CL:0000084;2.06e-12;25!CL:0000895;4.40e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,1.93e-40,6;CL:0000898,1.29e-21,3;CL:0000226,4.65e-20,3;CL:0000842,4.65e-20,3;CL:0000791,1.25e-17,18;CL:0000789,1.25e-17,18;CL:0002420,1.25e-17,18;CL:0002419,1.25e-17,18;CL:0000790,1.25e-17,18;CL:0000815,2.80e-15,2;CL:0000792,2.80e-15,2;CL:0002677,2.80e-15,2;CL:0000084,1.84e-12,25;CL:0000827,1.84e-12,25;CL:0000810,4.40e-08,1;CL:0000895,4.40e-08,1;CL:0002436,4.40e-08,1;CL:0002427,4.40e-08,1;CL:0002428,4.40e-08,1;CL:0002429,4.40e-08,1;CL:0002433,4.40e-08,1;CL:0002431,4.40e-08,1;CL:0002432,4.40e-08,1 | |||
|ontology_enrichment_development_v019=CL:0000790;1.47e-17;18!CL:0002427;4.40e-08;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002372;8.69e-08;1!UBERON:0001961;8.69e-08;1!UBERON:0001744;8.69e-08;1!UBERON:0001042;8.69e-08;1!UBERON:0001735;8.69e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002372,1.21e-07,1;UBERON:0001961,1.21e-07,1;UBERON:0001744,1.21e-07,1;UBERON:0001735,1.21e-07,1 | |||
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| ||
|short_description=p4@CTLA4 | |short_description=p4@CTLA4 | ||
}} | }} |
Latest revision as of 16:16, 19 September 2015
Short description: | p4@CTLA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CTLA4_5end |
Coexpression cluster: | C103_CD4_CD8_Natural_Peripheral_Whole_Neutrophils_Basophils |
Association with transcript: | 16bp_to_ENST00000487393_5end |
EntrezGene: | CTLA4 |
HGNC: | 2505 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 1.93e-40 | 6 |
naive T cell | 1.29e-21 | 3 |
single nucleate cell | 4.65e-20 | 3 |
mononuclear cell | 4.65e-20 | 3 |
mature alpha-beta T cell | 1.25e-17 | 18 |
alpha-beta T cell | 1.25e-17 | 18 |
immature T cell | 1.25e-17 | 18 |
mature T cell | 1.25e-17 | 18 |
immature alpha-beta T cell | 1.25e-17 | 18 |
regulatory T cell | 2.80e-15 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.80e-15 | 2 |
naive regulatory T cell | 2.80e-15 | 2 |
T cell | 1.84e-12 | 25 |
pro-T cell | 1.84e-12 | 25 |
CD4-positive, alpha-beta thymocyte | 4.40e-08 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 4.40e-08 | 1 |
mature CD4 single-positive thymocyte | 4.40e-08 | 1 |
resting double-positive thymocyte | 4.40e-08 | 1 |
double-positive blast | 4.40e-08 | 1 |
CD69-positive double-positive thymocyte | 4.40e-08 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 4.40e-08 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 4.40e-08 | 1 |
CD24-positive, CD4 single-positive thymocyte | 4.40e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
tonsil | 1.21e-07 | 1 |
mucosa-associated lymphoid tissue | 1.21e-07 | 1 |
lymphoid tissue | 1.21e-07 | 1 |
tonsillar ring | 1.21e-07 | 1 |