FFCP PHASE1:Hg19::chr6:7108210..7108221,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:7108210..7108221,+
|short_description=p7@RREB1
|description=CAGE_peak_7_at_RREB1_5end
|association_with_transcript=22bp_to_uc003mxb.2,uc003mxc.2,uc010jnw.2...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6239 | |EntrezGene=6239 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10449 | |HGNC=10449 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=22bp_to_uc003mxb.2,uc003mxc.2,uc010jnw.2,uc010jnx.2_5end | |||
|cluster_id=chr6:7108210..7108221,+ | |||
|description=CAGE_peak_7_at_RREB1_5end | |||
|id=chr6:7108210..7108221,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.17e-22!172;CL:0000566!1.17e-22!172;CL:0000738!1.78e-21!140;CL:0002032!7.00e-21!165;CL:0000837!7.00e-21!165;CL:0000763!2.09e-20!112;CL:0000049!2.09e-20!112;CL:0000988!4.10e-20!182;CL:0000557!5.07e-19!71;CL:0000766!1.55e-18!76;CL:0002031!2.72e-16!124;CL:0002009!4.04e-16!65;CL:0002057!4.66e-16!42;CL:0000839!6.79e-16!70;CL:0002194!5.91e-15!63;CL:0000576!5.91e-15!63;CL:0000040!5.91e-15!63;CL:0000559!5.91e-15!63;CL:0000860!6.76e-15!45;CL:0002087!1.04e-14!119 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.33e-17;33!CL:0002057;1.33e-17;33!CL:0000473;3.69e-15;39!CL:0000234;3.69e-15;39!CL:0000576;1.52e-13;48!CL:0000766;4.62e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,2.08e-24,67;CL:0000766,1.27e-23,72;CL:0000763,1.86e-22,108;CL:0000049,1.86e-22,108;CL:0002009,2.36e-20,61;CL:0000860,4.80e-20,42;CL:0002057,4.80e-20,42;CL:0000839,1.94e-19,66;CL:0000473,1.61e-18,48;CL:0000234,1.61e-18,48;CL:0002194,1.03e-17,59;CL:0000576,1.03e-17,59;CL:0000040,1.03e-17,59;CL:0000559,1.03e-17,59;CL:0000037,9.14e-15,168;CL:0000738,1.34e-14,136;CL:0002032,5.17e-14,161;CL:0000837,5.17e-14,161;CL:0000988,2.11e-13,177;CL:0002031,1.66e-11,120;CL:0002087,5.28e-08,115 | |||
|ontology_enrichment_development_v019=CL:0002057;3.08e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!3.45e-20!115;UBERON:0002193!2.59e-19!112;UBERON:0002390!1.12e-18!102;UBERON:0003061!1.12e-18!102;UBERON:0002371!6.93e-18!80;UBERON:0001474!1.01e-16!86;UBERON:0004765!2.42e-11!101;UBERON:0001434!2.42e-11!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.18e-24,76;UBERON:0001474,2.30e-21,82;UBERON:0002405,2.81e-20,93;UBERON:0002390,4.75e-20,98;UBERON:0003061,4.75e-20,98;UBERON:0004765,1.29e-18,90;UBERON:0002193,1.90e-18,108;UBERON:0001434,8.14e-16,100;UBERON:0003081,9.00e-09,203;UBERON:0002204,6.58e-08,167 | |||
|phase1_expression=0,0.642301571672949,0.704772020479856,0,0.446961094427288,0,0,0,1.04474251279935,0.245733936501509,0,0.218441372130172,0.527533956456907,0.123766352960047,0,0.672325146451775,0,0,0,0.123121058076788,0.408001382488506,0,0.286235987131057,0,0,0.0764134057479513,0.410502947249729,0.314843125254717,1.57345710739562,0.383829398097213,1.23852898652861,0,0,0,0.0774672005803016,0,1.76160263600908,2.21598163412751,2.4065333696417,1.08505435357926,0.671746422719773,1.6194683300949,1.03030227053675,1.89017710413434,1.51150377475524,1.21292030593908,1.62700325833979,1.6446715520873,1.54853185447552,0.863077176966451,0.256160706529101,0.709446689665756,1.37898272294647,1.93645405075148,4.06279459783025,2.25890807451126,1.09162460023138,1.12361742222542,0.306083892370903,1.60464513538047,0.639337125799041,1.31940520074686,0.199463657621632,1.27867425159808,0.290209238628584,0,1.24564449799115,1.00499466102697,1.5644487552606,0.65156653411535,0.605399502633369,0.368277635987565,0.316462387440884,0.633765858935825,0.425208599930087,0.628975936525128,1.12328631146495,0.750884464207532,1.6072558669708,0.855038231223746,0.99458338599545,0.730656615058536,0,0.546138611262131,0,0.853460445133014,0,0.574752439954483,0.661044872784862,0,0.569212969109448,0.587237189370939,2.6759125968766,0,0.560508562981536,1.31692042387539,0.196709770113833,0.393010762749165,0.411202997999018,0.501559486172034,0,0,1.94826728407911,0.222820913770347,0,0.886135578334485,0.812411591295047,0.25618263945135,0.130059347559878,0,0.552700035571697,0.869409257205157,1.18629250529648,0.802622484269139,1.04535523804977,0.339928028092699,0.383220493601921,0.68725489096526,0.253019692019503,0.637130828648193,0.651083453856419,0,0.752875595388864,0.76791966692651,0,0.710331756132051,0.821127996921047,0.403213486449465,1.33720097891754,1.30341963494519,0,0,0,0,0.50133791063589,0,0,0,0.472674085820339,0.443458794925128,0.263504357079378,1.0478326039817,0,0,0.649094787309367,1.21890816109487,0.531831842075461,0.953962497221368,1.71598473234038,0.371457501329565,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0.66944122552934,0,0,0.488124115096339,0.367663080345869,0,0.446498641420399,0.898117490504679,0.112611480483322,1.53316637465883,0.949265659568129,0.366403487860815,0,0,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0,0.933633106199299,0.134710672069688,0.163461903113459,0.454072282934794,0.576175924479999,0.234321431833797,0,0,0.149448680551801,0.117434498643765,0,0.140450806702248,0.204154171254893,0.245668634623536,0.413303124703062,0,0,0.910161361938026,0,0,0,0,0,0,0,0,0.358779271377724,0,0,0.300091096084402,0.206105058476878,0.515281080091258,0,0.337552664482532,0.0974370051611986,0.757301322732344,0.368199594569197,0,0.355009592516614,0.201504196455281,0,0,0,0,0.365921118388786,0.397589304964456,0.580969714347592,0.207322110030741,0,0,0,0.643240938192885,0,0,0,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0.196221465125346,0,1.4763109092493,0,0.4115740113314,0,2.53510069643662,0,1.18157981336281,0.882926198829301,0.614942192715568,0.171567810298526,0.219500570817251,0,0.100528972411631,0,0,0,0,0.231860809950154,0,0.577465791044295,0,0.190254152234598,0,0,0.492434012174795,1.63802985597466,0.594524649154913,0,0,0.425325291727159,0,0,0.383382679165211,5.91195885475132,0.792435906119034,1.03664057770386,0.864719720501769,1.13618190083742,0.063497894292169,0,0,0,0.102827492703324,0,0,0.224262168690721,0.43596006883328,0.2933531432838,0.129271715757778,0,0,0.26593811658487,0,0.514414748524284,2.83698264046557,0,0.142977993658148,0.542621605391443,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0.112085143993527,0.591092280605782,0,0.77005821767849,0.254094624222463,0,0,0,0,0.749007023947182,5.9832291840805,2.90090859405225,0.24538298343828,0,0.542530047399471,0.207970861530807,0.178428988797162,0,0.234282829985426,0,0,0,0,0.368738337083406,0,0.783204629850962,0,0.413536052245775,0.215714200818617,0.426910231213777,0,0,0,0,0.153461973288062,0,0.128139149255701,0,0,0,0.154209693802656,0,0,0,0,0.483437798366489,0.200506470303285,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0.510281115829547,0,3.08454505380579,0,0,0.509752546090077,0.831076008928724,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.515205058238611,0.0915694648183434,0,0,0,0,0.193341436584244,0.924291702687866,0.921022048356777,0.275673144969061,0.322260734604821,0.435050081742686,0.511359764496605,0.0890320356467374,0.330569830721956,0.192190067365106,0.255225424989168,0,0,0.94443704049192,0,0,0,0,0,0,0.372158369359667,0,0.38126038784765,0.255897791311334,0,0,0,0,0,0.117812402345686,0,0,0,0,0.243713489631284,1.05650146756755,0.136499911407986,0.707027159768564,0,0,0,0,0,0,0,0.30982349809975,0.281695602532241,0,0,0,0,0.211107635297664,0,0,0.349934720244983,0,0,0,0.753150406214233,0,0,0.886860307073351,0.229723400206959,2.0297904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| ||
|short_description=p7@RREB1 | |||
}} | }} |
Latest revision as of 15:27, 19 September 2015
Short description: | p7@RREB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RREB1_5end |
Coexpression cluster: | NA |
Association with transcript: | 22bp_to_uc003mxb.2, uc003mxc.2, uc010jnw.2, uc010jnx.2_5end |
EntrezGene: | RREB1 |
HGNC: | 10449 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 2.08e-24 | 67 |
myeloid leukocyte | 1.27e-23 | 72 |
myeloid cell | 1.86e-22 | 108 |
common myeloid progenitor | 1.86e-22 | 108 |
macrophage dendritic cell progenitor | 2.36e-20 | 61 |
classical monocyte | 4.80e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.80e-20 | 42 |
myeloid lineage restricted progenitor cell | 1.94e-19 | 66 |
defensive cell | 1.61e-18 | 48 |
phagocyte | 1.61e-18 | 48 |
monopoietic cell | 1.03e-17 | 59 |
monocyte | 1.03e-17 | 59 |
monoblast | 1.03e-17 | 59 |
promonocyte | 1.03e-17 | 59 |
hematopoietic stem cell | 9.14e-15 | 168 |
leukocyte | 1.34e-14 | 136 |
hematopoietic oligopotent progenitor cell | 5.17e-14 | 161 |
hematopoietic multipotent progenitor cell | 5.17e-14 | 161 |
hematopoietic cell | 2.11e-13 | 177 |
hematopoietic lineage restricted progenitor cell | 1.66e-11 | 120 |
nongranular leukocyte | 5.28e-08 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.18e-24 | 76 |
bone element | 2.30e-21 | 82 |
immune system | 2.81e-20 | 93 |
hematopoietic system | 4.75e-20 | 98 |
blood island | 4.75e-20 | 98 |
skeletal element | 1.29e-18 | 90 |
hemolymphoid system | 1.90e-18 | 108 |
skeletal system | 8.14e-16 | 100 |
lateral plate mesoderm | 9.00e-09 | 203 |
musculoskeletal system | 6.58e-08 | 167 |