FFCP PHASE1:Hg19::chr7:77469439..77469459,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57157 | |EntrezGene=57157 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13411 | |HGNC=13411 | ||
|TSSclassifier=strong | |||
|UniProt=G5E9H7,Q8N3S3,Q8TBW4 | |UniProt=G5E9H7,Q8N3S3,Q8TBW4 | ||
|association_with_transcript=0bp_to_ENST00000416283,ENST00000450574,NM_001127357,NM_001127359,NM_020432,uc003ugr.3,uc003ugs.3,uc003ugt.3,uc003ugu.3_5end | |association_with_transcript=0bp_to_ENST00000416283,ENST00000450574,NM_001127357,NM_001127359,NM_020432,uc003ugr.3,uc003ugs.3,uc003ugt.3,uc003ugu.3_5end | ||
|cluster_id=chr7:77469439..77469459,+ | |||
|coexpression_cluster_id=C47 | |coexpression_cluster_id=C47 | ||
|description=CAGE_peak_6_at_PHTF2_5end | |description=CAGE_peak_6_at_PHTF2_5end | ||
|id=chr7:77469439..77469459,+ | |id=chr7:77469439..77469459,+ | ||
|ontology_enrichment_celltype=CL:0000945!4.48e-36!24;CL:0000826!4.48e-36!24;CL:0000236!5.07e-35!14;CL:0002031!2.76e-23!124;CL:0002087!1.10e-21!119;CL:0000738!6.88e-21!140;CL:0000838!1.55e-17!52;CL:0000542!4.18e-17!53;CL:0000051!4.18e-17!53;CL:0002032!3.17e-16!165;CL:0000837!3.17e-16!165;CL:0000037!3.62e-15!172;CL:0000566!3.62e-15!172;CL:0000988!8.39e-14!182;CL:0002057!3.69e-13!42;CL:0000860!5.05e-12!45;CL:0002393!8.07e-11!9;CL:0002397!8.07e-11!9;CL:0000875!8.48e-10!3;CL:0002396!8.48e-10!3;CL:0000766!2.37e-08!76;CL:0000839!2.94e-08!70;CL:0000557!4.35e-08!71;CL:0002194!2.31e-07!63;CL:0000576!2.31e-07!63;CL:0000040!2.31e-07!63;CL:0000559!2.31e-07!63;CL:0002009!4.93e-07!65 | |ontology_enrichment_celltype=CL:0000945!4.48e-36!24;CL:0000826!4.48e-36!24;CL:0000236!5.07e-35!14;CL:0002031!2.76e-23!124;CL:0002087!1.10e-21!119;CL:0000738!6.88e-21!140;CL:0000838!1.55e-17!52;CL:0000542!4.18e-17!53;CL:0000051!4.18e-17!53;CL:0002032!3.17e-16!165;CL:0000837!3.17e-16!165;CL:0000037!3.62e-15!172;CL:0000566!3.62e-15!172;CL:0000988!8.39e-14!182;CL:0002057!3.69e-13!42;CL:0000860!5.05e-12!45;CL:0002393!8.07e-11!9;CL:0002397!8.07e-11!9;CL:0000875!8.48e-10!3;CL:0002396!8.48e-10!3;CL:0000766!2.37e-08!76;CL:0000839!2.94e-08!70;CL:0000557!4.35e-08!71;CL:0002194!2.31e-07!63;CL:0000576!2.31e-07!63;CL:0000040!2.31e-07!63;CL:0000559!2.31e-07!63;CL:0002009!4.93e-07!65 | ||
|ontology_enrichment_celltype_v019=CL:0000236;3.50e-60;13!CL:0000945;1.07e-31;24!CL:0000875;1.77e-19;3!CL:0002396;1.77e-19;3!CL:0000542;2.75e-11;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.04e-55,14;CL:0000945,1.12e-31,24;CL:0000826,1.12e-31,24;CL:0000875,1.51e-19,3;CL:0002396,1.51e-19,3;CL:0000838,1.58e-13,52;CL:0000542,3.11e-13,53;CL:0000051,3.11e-13,53;CL:0002087,1.02e-09,115;CL:0002031,3.41e-09,120;CL:0000738,5.44e-09,136;CL:0002032,4.03e-07,161;CL:0000837,4.03e-07,161;CL:0002393,7.41e-07,9;CL:0002397,7.41e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000051;2.75e-11;53!UBERON:0004874;4.50e-08;1!UBERON:0006298;1.44e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.16e-09!102;UBERON:0003061!1.16e-09!102;UBERON:0002193!3.07e-09!112;UBERON:0007023!2.52e-07!115;UBERON:0002371!9.54e-07!80 | |ontology_enrichment_uberon=UBERON:0002390!1.16e-09!102;UBERON:0003061!1.16e-09!102;UBERON:0002193!3.07e-09!112;UBERON:0007023!2.52e-07!115;UBERON:0002371!9.54e-07!80 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.30e-15;15!UBERON:0000179;9.30e-15;15!UBERON:0000463;9.30e-15;15!UBERON:0001723;1.18e-09;3!UBERON:0001033;1.18e-09;3!UBERON:0000989;4.50e-08;1!UBERON:0008811;4.50e-08;1!UBERON:0002426;5.51e-08;1!UBERON:0003831;5.51e-08;1!UBERON:0003898;5.51e-08;1!UBERON:0004830;5.51e-08;1!UBERON:0003830;5.51e-08;1!UBERON:0005175;5.51e-08;1!UBERON:0001774;5.51e-08;1!UBERON:0001103;5.51e-08;1!UBERON:0001736;1.44e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.02e-14,15;UBERON:0000179,1.02e-14,15;UBERON:0000463,1.02e-14,15;UBERON:0001723,1.38e-09,3;UBERON:0001033,1.38e-09,3;UBERON:0010056,1.38e-09,3;UBERON:0000989,4.35e-08,1;UBERON:0008811,4.35e-08,1;UBERON:0006258,4.35e-08,1;UBERON:0005876,4.35e-08,1;UBERON:0004874,4.35e-08,1;UBERON:0002426,5.33e-08,1;UBERON:0003831,5.33e-08,1;UBERON:0003898,5.33e-08,1;UBERON:0004830,5.33e-08,1;UBERON:0003830,5.33e-08,1;UBERON:0005175,5.33e-08,1;UBERON:0001774,5.33e-08,1;UBERON:0001103,5.33e-08,1;UBERON:0010084,5.33e-08,1;UBERON:0001736,1.04e-07,1;UBERON:0006298,1.04e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,1.15148819429164,0,0,0,0,0.387336002901508,0.284338464974843,0,0,0,0,0,0,0,0.436194716338694,0,0.242584061187816,0,0,0,0,0,0.236482229888585,1.03423704220986,0,0,0,0,0.224723484445085,0.612167784741805,0,0,0.329851300186716,0,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0,0.632924774881769,0.211255286311942,0.212604299965044,0.209658645508376,0,0,0,1.14005097496499,1.79025009479181,2.00930569141097,12.3197371122926,20.753267227961,16.011166569544,16.6424786800938,10.4102956629363,13.7940585589076,7.27149360063348,14.3108063180305,3.98449078376614,9.39579502993502,8.41001101875504,1.32171328579026,0,0,0,0,0,0,0,0,0,0.111410456885174,0.294605907474837,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,4.58782324285425,1.13929437434833,1.66762242820452,4.93634727703433,0,2.70015718619057,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.63093176758547,0,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.828478110694391,0,0,0.243585196761792,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,12.4052794597324,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,4.72248911538736,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83491713361816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.963100135801,0,0,0,0,0.12729431655633,0.404234377916439,14.8047388569934,1.02669990325584,0.673520530145875,1.2192774916755,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,1.15148819429164,0,0,0,0,0.387336002901508,0.284338464974843,0,0,0,0,0,0,0,0.436194716338694,0,0.242584061187816,0,0,0,0,0,0.236482229888585,1.03423704220986,0,0,0,0,0.224723484445085,0.612167784741805,0,0,0.329851300186716,0,0,0,0,0,0,0,0.217188844705117,0.605399502633369,0,0.632924774881769,0.211255286311942,0.212604299965044,0.209658645508376,0,0,0,1.14005097496499,1.79025009479181,2.00930569141097,12.3197371122926,20.753267227961,16.011166569544,16.6424786800938,10.4102956629363,13.7940585589076,7.27149360063348,14.3108063180305,3.98449078376614,9.39579502993502,8.41001101875504,1.32171328579026,0,0,0,0,0,0,0,0,0,0.111410456885174,0.294605907474837,0.221533894583621,0.270803863765016,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,4.58782324285425,1.13929437434833,1.66762242820452,4.93634727703433,0,2.70015718619057,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246169610922139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.63093176758547,0,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.828478110694391,0,0,0.243585196761792,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,12.4052794597324,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,4.72248911538736,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83491713361816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.963100135801,0,0,0,0,0.12729431655633,0.404234377916439,14.8047388569934,1.02669990325584,0.673520530145875,1.2192774916755,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | ||
|short_description=p6@PHTF2 | |short_description=p6@PHTF2 | ||
}} | }} |
Latest revision as of 15:13, 19 September 2015
Short description: | p6@PHTF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PHTF2_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_ENST00000416283, ENST00000450574, NM_001127357, NM_001127359, NM_020432, uc003ugr.3, uc003ugs.3, uc003ugt.3, uc003ugu.3_5end |
EntrezGene: | PHTF2 |
HGNC: | 13411 |
UniProt: | G5E9H7Q8N3S3Q8TBW4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.04e-55 | 14 |
lymphocyte of B lineage | 1.12e-31 | 24 |
pro-B cell | 1.12e-31 | 24 |
non-classical monocyte | 1.51e-19 | 3 |
CD14-low, CD16-positive monocyte | 1.51e-19 | 3 |
lymphoid lineage restricted progenitor cell | 1.58e-13 | 52 |
lymphocyte | 3.11e-13 | 53 |
common lymphoid progenitor | 3.11e-13 | 53 |
nongranular leukocyte | 1.02e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 3.41e-09 | 120 |
leukocyte | 5.44e-09 | 136 |
hematopoietic oligopotent progenitor cell | 4.03e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.03e-07 | 161 |
intermediate monocyte | 7.41e-07 | 9 |
CD14-positive, CD16-positive monocyte | 7.41e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
blood | 1.02e-14 | 15 |
haemolymphatic fluid | 1.02e-14 | 15 |
organism substance | 1.02e-14 | 15 |
tongue | 1.38e-09 | 3 |
gustatory system | 1.38e-09 | 3 |
future tongue | 1.38e-09 | 3 |
penis | 4.35e-08 | 1 |
intromittent organ | 4.35e-08 | 1 |
lateral plate mesenchyme | 4.35e-08 | 1 |
undifferentiated genital tubercle | 4.35e-08 | 1 |
somatopleure | 4.35e-08 | 1 |
chest muscle | 5.33e-08 | 1 |
respiratory system muscle | 5.33e-08 | 1 |
skeletal muscle of trunk | 5.33e-08 | 1 |
respiratory system skeletal muscle | 5.33e-08 | 1 |
thoracic segment muscle | 5.33e-08 | 1 |
chest organ | 5.33e-08 | 1 |
muscle of trunk | 5.33e-08 | 1 |
diaphragm | 5.33e-08 | 1 |
future diaphragm | 5.33e-08 | 1 |
submandibular gland | 1.04e-07 | 1 |
submandibular gland primordium | 1.04e-07 | 1 |