FFCP PHASE1:Hg19::chr6:70506595..70506622,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55788 | |EntrezGene=55788 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=23038 | |HGNC=23038 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-61bp_to_uc010kal.2_5end | |association_with_transcript=-61bp_to_uc010kal.2_5end | ||
|cluster_id=chr6:70506595..70506622,- | |||
|description=CAGE_peak_7_at_LMBRD1_5end | |description=CAGE_peak_7_at_LMBRD1_5end | ||
|id=chr6:70506595..70506622,- | |id=chr6:70506595..70506622,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006241;1.32e-09;3!UBERON:0003057;1.32e-09;3!UBERON:0006965;3.54e-07;2 | |ontology_enrichment_development_v019=UBERON:0006241;1.32e-09;3!UBERON:0003057;1.32e-09;3!UBERON:0006965;3.54e-07;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.27e-22!115;UBERON:0001049!5.55e-13!57;UBERON:0005068!5.55e-13!57;UBERON:0006241!5.55e-13!57;UBERON:0007135!5.55e-13!57;UBERON:0003075!6.57e-13!86;UBERON:0007284!6.57e-13!86;UBERON:0002346!4.61e-12!90;UBERON:0002616!3.78e-11!59;UBERON:0001017!6.59e-11!82;UBERON:0003080!8.47e-11!42;UBERON:0005743!9.62e-11!86;UBERON:0000955!1.75e-10!69;UBERON:0006238!1.75e-10!69;UBERON:0002780!2.18e-10!41;UBERON:0001890!2.18e-10!41;UBERON:0006240!2.18e-10!41;UBERON:0003056!9.24e-10!61;UBERON:0001893!1.51e-09!34;UBERON:0000073!2.24e-09!94;UBERON:0001016!2.24e-09!94;UBERON:0002791!4.01e-09!33;UBERON:0002020!7.68e-09!34;UBERON:0003528!7.68e-09!34;UBERON:0001869!1.40e-08!32;UBERON:0000033!8.13e-08!123;UBERON:0000153!8.69e-08!129;UBERON:0007811!8.69e-08!129 | |ontology_enrichment_uberon=UBERON:0007023!2.27e-22!115;UBERON:0001049!5.55e-13!57;UBERON:0005068!5.55e-13!57;UBERON:0006241!5.55e-13!57;UBERON:0007135!5.55e-13!57;UBERON:0003075!6.57e-13!86;UBERON:0007284!6.57e-13!86;UBERON:0002346!4.61e-12!90;UBERON:0002616!3.78e-11!59;UBERON:0001017!6.59e-11!82;UBERON:0003080!8.47e-11!42;UBERON:0005743!9.62e-11!86;UBERON:0000955!1.75e-10!69;UBERON:0006238!1.75e-10!69;UBERON:0002780!2.18e-10!41;UBERON:0001890!2.18e-10!41;UBERON:0006240!2.18e-10!41;UBERON:0003056!9.24e-10!61;UBERON:0001893!1.51e-09!34;UBERON:0000073!2.24e-09!94;UBERON:0001016!2.24e-09!94;UBERON:0002791!4.01e-09!33;UBERON:0002020!7.68e-09!34;UBERON:0003528!7.68e-09!34;UBERON:0001869!1.40e-08!32;UBERON:0000033!8.13e-08!123;UBERON:0000153!8.69e-08!129;UBERON:0007811!8.69e-08!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002240;1.32e-09;3!UBERON:0005174;1.32e-09;3!UBERON:0001137;1.32e-09;3 | |ontology_enrichment_uberon_v019=UBERON:0002240;1.32e-09;3!UBERON:0005174;1.32e-09;3!UBERON:0001137;1.32e-09;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.73e-12,114;UBERON:0002240,7.29e-10,3;UBERON:0005174,7.29e-10,3;UBERON:0001137,7.29e-10,3;UBERON:0003075,9.14e-10,82;UBERON:0007284,9.14e-10,82;UBERON:0002346,4.35e-09,86;UBERON:0001049,5.32e-09,56;UBERON:0005068,5.32e-09,56;UBERON:0006241,5.32e-09,56;UBERON:0007135,5.32e-09,56;UBERON:0010371,1.41e-07,104;UBERON:0010314,4.54e-07,132 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.986680828671798,0,0.446961094427288,0,0,0,1.04474251279935,0,0,0.218441372130172,0,0.74259811776028,0.331397375727916,0.672325146451775,0,0,0.487932798790507,0,0.408001382488506,0,0.286235987131057,0.136874425072884,0.125542639594803,0,0,0.314843125254717,0.393364276848904,0,0.309632246632152,0,0,0,0.542270404062111,0.284338464974843,1.17440175733939,0,0.401088894940283,0,0.447830948479849,0.647787332037959,0,0,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0.689491361473237,0,0,0,0,0.224723484445085,0,0.320929027076094,0,0.329851300186716,0,0.426224750532694,0,0,0.622822248995575,0,0,0.217188844705117,0.605399502633369,0,0,0.211255286311942,0,0,0.44931452458598,0.300353785683013,0.48217676009124,0,0,0.365328307529268,1.75996244461323,0.546138611262131,1.77901850772711,0,1.20118796110804,1.14950487990897,0.661044872784862,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,1.94826728407911,0.334231370655521,0,0,0,0.128091319725675,0,0,0.829050053357545,0,0.14828656316206,0,0,0.113309342697566,0,0,0,0.318565414324097,0,0,0.301150238155546,0.383959833463255,0,0.236777252044017,0,0,0.267440195783507,0.144824403882799,0,0,0.12786256184353,0.722878304769133,0.50133791063589,0.724232594804119,0,0.973269740605272,0.189069634328136,0.443458794925128,0.263504357079378,0.785874452986276,0,0,0,0,0.132957960518865,0.238490624305342,0,0,0.198762407366705,0,0.347140501607594,0,0.419499436209906,0,0,0.258416759169329,0,0,0,0,0,0,0,0.17859945656816,0.22452937262617,0,0,0,0,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0.560677600142307,0,0.24666754841716,0.933633106199299,0.538842688278752,0.163461903113459,0.756787138224657,0.576175924479999,0,0,0,0.149448680551801,0.117434498643765,0.323745888736263,0.140450806702248,0.204154171254893,0.122834317311768,0.103325781175765,1.18800285728205,0.247266929278557,0,0,0.336672227908132,0,0,0,0,0.751190294532984,0.113432183160021,0.179389635688862,1.06778694409284,0.211931901159562,0,0.103052529238439,0.257640540045629,0,0.337552664482532,0.292311015483596,0.757301322732344,0.460249493211497,0.484938170456436,1.06502877754984,0.403008392910561,0,0.193260853163297,0.272746120590835,0.286804595389004,0.365921118388786,0.265059536642971,0.580969714347592,0.310983165046111,0,0,0,0,1.38134921352481,0.464367928031979,0,0.118306800039844,0,0,0,0,0,0,0.196221465125346,0,0,0,0.4115740113314,0,1.26755034821831,0,0,0.441463099414651,0,0,0,0,0,0,0.325808305310325,1.03993478527958,1.44331342025273,0.231860809950154,0.352226082707465,0.144366447761074,0.462985512576611,0,0,0,0,0,0.445893486866185,0,0,0,0.0895585227028483,0,0,0.492663237895943,0.264145302039678,0,1.00883967391873,0.25248486685276,0.190493682876507,0,0,1.71072446022705,0,0,0.285826432630578,0,0,0,0.129271715757778,0,0,0.531876233169741,0,0,0,0,0.57191197463259,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0,0,0.394061520403854,0.215627574859517,0,0.508189248444927,0,0,0,0,0,0,0.414415513436035,1.34960640891054,1.00034104211935,0.271265023699736,0,0.356857977594324,0.157702415033935,0.702848489956279,1.20378439891088,2.27407504055985,0,0,0.184369168541703,0.521301686808497,0.391602314925481,0.686286847621712,0,0.431428401637234,0.320182673410333,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.164254312027618,0,0.464841513839837,0.120859449591622,0.200506470303285,0,0.114814448164607,0.182091168006717,0.393373244878272,0,0,0,0,0,0,0.340187410553031,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0.9273691048295,0.0915694648183434,0.165018999841176,0,0,0,0.193341436584244,0.154048617114644,0.307007349452259,0,0.859361958946189,0.725083469571143,0.255679882248303,0.534192213880424,0.165284915360978,0,0.127612712494584,0,0,0,0,0.308033580176089,0,0,0.18532421910392,0.143124886741991,0,0.316379424718726,0,0,0.855877976067841,0.636406495851874,0.78494864019923,0,0.274537029736055,0.235624804691373,0,0,0.842516912477962,0,0,0,0.545999645631943,0,1.13008116620243,0,0,0,0,0.655894752046633,0,0,0.563391205064483,0.143411352204052,0.0982490410131212,0,0,0.211107635297664,0.658589785919804,0,0.349934720244983,0,0,0,1.03558180854457,0,0,0,0,1.01489521846434,1.52927441428475,0.569647187174163,0,0.411362273086194,0.648473311192717,0.540031437238115,0,0,0,0.245040215981032,0,0,0.284567373393656,0,0.399158742865633,0,0.211673582723883,0,0,0.228234679033192,0.156679895773023,0,0.338583555603207,0,0,0.425846237690326,0,0,0.223676107892416,0,0,0.278406173895242,1.23087398947712,0,0.66614393599564,1.4098700508785,0.18714054040822,0.879049075631364,0.121360521749513,0.111443384277478,0,0,0,0.307160702099232,0,0.422008249231538,0,0,0.211125408127993,3.58646378851925,0.276283915531148,0.251932747854276,0.102268682502155,0.246169610922139,0.311039587661807,0,0,0,2.86065876347107,0,0,0,0.649376687132959,0,0.260427761085233,0,0.724999575434793,0.1137934482855,0,0,0,0,0.173624994933292,0,1.08536794762867,0,0.110579259931225,0.5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| ||
|short_description=p7@LMBRD1 | |short_description=p7@LMBRD1 | ||
}} | }} |
Latest revision as of 15:09, 19 September 2015
Short description: | p7@LMBRD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_LMBRD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -61bp_to_uc010kal.2_5end |
EntrezGene: | LMBRD1 |
HGNC: | 23038 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.73e-12 | 114 |
spinal cord | 7.29e-10 | 3 |
dorsal region element | 7.29e-10 | 3 |
dorsum | 7.29e-10 | 3 |
neural plate | 9.14e-10 | 82 |
presumptive neural plate | 9.14e-10 | 82 |
neurectoderm | 4.35e-09 | 86 |
neural tube | 5.32e-09 | 56 |
neural rod | 5.32e-09 | 56 |
future spinal cord | 5.32e-09 | 56 |
neural keel | 5.32e-09 | 56 |
ecto-epithelium | 1.41e-07 | 104 |
structure with developmental contribution from neural crest | 4.54e-07 | 132 |