FFCP PHASE1:Hg19::chr7:7680601..7680632,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:7680601..7680632,-
|short_description=p4@RPA3
|description=CAGE_peak_4_at_RPA3_5end
|association_with_transcript=0bp_to_ENST00000396682_5end
|EntrezGene=6...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6119 | |EntrezGene=6119 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10291 | |HGNC=10291 | ||
|TSSclassifier=strong | |||
|UniProt=P35244 | |UniProt=P35244 | ||
|association_with_transcript=0bp_to_ENST00000396682_5end | |||
|cluster_id=chr7:7680601..7680632,- | |||
|description=CAGE_peak_4_at_RPA3_5end | |||
|id=chr7:7680601..7680632,- | |||
|ontology_enrichment_celltype=CL:0000766!2.01e-33!76;CL:0000557!5.64e-33!71;CL:0000839!2.91e-32!70;CL:0002009!9.04e-30!65;CL:0000763!8.42e-29!112;CL:0000049!8.42e-29!112;CL:0000738!1.42e-28!140;CL:0000037!1.68e-28!172;CL:0000566!1.68e-28!172;CL:0002194!2.00e-28!63;CL:0000576!2.00e-28!63;CL:0000040!2.00e-28!63;CL:0000559!2.00e-28!63;CL:0002031!2.63e-28!124;CL:0000988!1.70e-27!182;CL:0002032!5.15e-27!165;CL:0000837!5.15e-27!165;CL:0002087!3.81e-24!119;CL:0000860!3.62e-22!45;CL:0002057!3.71e-21!42;CL:0000063!3.35e-11!578 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.93e-20;39!CL:0000234;1.93e-20;39!CL:0000576;2.11e-20;48!CL:0000860;2.44e-20;33!CL:0002057;2.44e-20;33!CL:0000766;8.86e-19;69!CL:0000763;1.18e-09;100!CL:0000738;1.85e-09;136!CL:0002087;2.41e-09;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,6.45e-45,72;CL:0000557,1.28e-43,67;CL:0000839,1.26e-42,66;CL:0002009,3.65e-39,61;CL:0000738,2.12e-38,136;CL:0002031,1.09e-37,120;CL:0002194,2.74e-37,59;CL:0000576,2.74e-37,59;CL:0000040,2.74e-37,59;CL:0000559,2.74e-37,59;CL:0000763,1.49e-36,108;CL:0000049,1.49e-36,108;CL:0000037,3.99e-36,168;CL:0000988,4.99e-36,177;CL:0002032,4.38e-35,161;CL:0000837,4.38e-35,161;CL:0000473,1.14e-32,48;CL:0000234,1.14e-32,48;CL:0002087,4.27e-32,115;CL:0000860,6.89e-28,42;CL:0002057,6.89e-28,42;CL:0000134,3.09e-09,354;CL:0002320,1.25e-08,361;CL:0000219,2.37e-08,386;CL:0002393,4.05e-07,9;CL:0002397,4.05e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;3.03e-20;42!CL:0000049;2.92e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.42e-30!80;UBERON:0001474!9.12e-27!86;UBERON:0002390!7.34e-26!102;UBERON:0003061!7.34e-26!102;UBERON:0004765!4.03e-22!101;UBERON:0001434!4.03e-22!101;UBERON:0002193!1.23e-21!112;UBERON:0002405!2.68e-21!115;UBERON:0002204!1.31e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.85e-07;9!UBERON:0001557;2.85e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.15e-41,76;UBERON:0001474,4.54e-38,82;UBERON:0002390,3.85e-33,98;UBERON:0003061,3.85e-33,98;UBERON:0004765,5.22e-32,90;UBERON:0002405,9.68e-31,93;UBERON:0002193,4.05e-28,108;UBERON:0001434,6.55e-26,100;UBERON:0002204,4.67e-09,167;UBERON:0002384,6.53e-08,371;UBERON:0003081,7.58e-08,203;UBERON:0001737,1.08e-07,9 | |||
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| ||
|short_description=p4@RPA3 | |||
}} | }} |
Latest revision as of 14:19, 19 September 2015
Short description: | p4@RPA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RPA3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000396682_5end |
EntrezGene: | RPA3 |
HGNC: | 10291 |
UniProt: | P35244 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 6.45e-45 | 72 |
granulocyte monocyte progenitor cell | 1.28e-43 | 67 |
myeloid lineage restricted progenitor cell | 1.26e-42 | 66 |
macrophage dendritic cell progenitor | 3.65e-39 | 61 |
leukocyte | 2.12e-38 | 136 |
hematopoietic lineage restricted progenitor cell | 1.09e-37 | 120 |
monopoietic cell | 2.74e-37 | 59 |
monocyte | 2.74e-37 | 59 |
monoblast | 2.74e-37 | 59 |
promonocyte | 2.74e-37 | 59 |
myeloid cell | 1.49e-36 | 108 |
common myeloid progenitor | 1.49e-36 | 108 |
hematopoietic stem cell | 3.99e-36 | 168 |
hematopoietic cell | 4.99e-36 | 177 |
hematopoietic oligopotent progenitor cell | 4.38e-35 | 161 |
hematopoietic multipotent progenitor cell | 4.38e-35 | 161 |
defensive cell | 1.14e-32 | 48 |
phagocyte | 1.14e-32 | 48 |
nongranular leukocyte | 4.27e-32 | 115 |
classical monocyte | 6.89e-28 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.89e-28 | 42 |
mesenchymal cell | 3.09e-09 | 354 |
connective tissue cell | 1.25e-08 | 361 |
motile cell | 2.37e-08 | 386 |
intermediate monocyte | 4.05e-07 | 9 |
CD14-positive, CD16-positive monocyte | 4.05e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.15e-41 | 76 |
bone element | 4.54e-38 | 82 |
hematopoietic system | 3.85e-33 | 98 |
blood island | 3.85e-33 | 98 |
skeletal element | 5.22e-32 | 90 |
immune system | 9.68e-31 | 93 |
hemolymphoid system | 4.05e-28 | 108 |
skeletal system | 6.55e-26 | 100 |
musculoskeletal system | 4.67e-09 | 167 |
connective tissue | 6.53e-08 | 371 |
lateral plate mesoderm | 7.58e-08 | 203 |
larynx | 1.08e-07 | 9 |