FFCP PHASE1:Hg19::chr6:6587579..6587601,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:6587579..6587601,-
|short_description=p3@LY86-AS1
|description=CAGE_peak_3_at_LY86-AS1_5end
|association_with_transcript=-153bp_to_ENST00000447858_5end
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=26593 | |HGNC=26593 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-153bp_to_ENST00000447858_5end | |||
|cluster_id=chr6:6587579..6587601,- | |||
|coexpression_cluster_id=C782 | |||
|description=CAGE_peak_3_at_LY86-AS1_5end | |||
|id=chr6:6587579..6587601,- | |||
|ontology_enrichment_celltype=CL:0000945!2.09e-87!24;CL:0000826!2.09e-87!24;CL:0000236!7.50e-52!14;CL:0000542!6.08e-44!53;CL:0000051!6.08e-44!53;CL:0000838!6.43e-41!52;CL:0002087!6.82e-23!119;CL:0000738!4.39e-20!140;CL:0002031!1.16e-16!124;CL:0000037!4.01e-15!172;CL:0000566!4.01e-15!172;CL:0000988!6.24e-14!182;CL:0000817!1.24e-13!3;CL:0002032!1.72e-13!165;CL:0000837!1.72e-13!165;CL:0000785!8.60e-10!2;CL:0000955!8.60e-10!2;CL:0000818!8.60e-10!2;CL:0000954!8.60e-10!2;CL:0000816!8.60e-10!2 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.43e-119;24!CL:0000236;1.22e-54;13!CL:0000542;3.42e-31;53!CL:0000946;2.74e-10;1!CL:0000786;2.74e-10;1!CL:0002087;4.90e-09;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.35e-119,24;CL:0000826,2.35e-119,24;CL:0000236,1.55e-62,14;CL:0000542,6.27e-59,53;CL:0000051,6.27e-59,53;CL:0000838,1.04e-53,52;CL:0002087,2.10e-25,115;CL:0002031,1.62e-21,120;CL:0000738,4.59e-21,136;CL:0002032,2.34e-17,161;CL:0000837,2.34e-17,161;CL:0000037,1.63e-16,168;CL:0000988,1.58e-15,177;CL:0000946,2.74e-10,1;CL:0000786,2.74e-10,1;CL:0000980,2.74e-10,1 | |||
|ontology_enrichment_development_v019=CL:0000051;3.42e-31;53 | |||
|ontology_enrichment_disease=DOID:0060058!5.82e-21!10 | |||
|ontology_enrichment_disease_v019=DOID:630;1.43e-10;1!DOID:0050177;1.43e-10;1!DOID:12603;1.43e-10;1!DOID:0050427;1.43e-10;1!DOID:2355;2.74e-10;1!DOID:0060058;7.23e-09;10 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,1.30e-10,1;DOID:630,1.89e-10,1;DOID:0050177,1.89e-10,1;DOID:0050427,1.89e-10,1;DOID:2355,3.29e-10,1;DOID:0060058,7.23e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0002106!2.88e-14!3;UBERON:0004854!2.88e-14!3;UBERON:0009034!2.88e-14!3;UBERON:0002095!2.88e-14!3;UBERON:0004782!2.88e-14!3;UBERON:0003281!2.88e-14!3;UBERON:0009664!2.88e-14!3;UBERON:0002296!2.88e-14!3;UBERON:0005602!2.88e-14!3;UBERON:0001179!2.88e-14!3;UBERON:0006293!2.88e-14!3;UBERON:0004177!2.62e-10!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;4.70e-13;3!UBERON:0002372;4.33e-10;1!UBERON:0001961;4.33e-10;1!UBERON:0001744;4.33e-10;1!UBERON:0001042;4.33e-10;1!UBERON:0001735;4.33e-10;1!UBERON:0004177;3.46e-08;5!UBERON:0005057;3.46e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,4.84e-13,3;UBERON:0004854,4.84e-13,3;UBERON:0009034,4.84e-13,3;UBERON:0002095,4.84e-13,3;UBERON:0004782,4.84e-13,3;UBERON:0003281,4.84e-13,3;UBERON:0009664,4.84e-13,3;UBERON:0002296,4.84e-13,3;UBERON:0005602,4.84e-13,3;UBERON:0001179,4.84e-13,3;UBERON:0006293,4.84e-13,3;UBERON:0002372,4.75e-10,1;UBERON:0001961,4.75e-10,1;UBERON:0001744,4.75e-10,1;UBERON:0001735,4.75e-10,1 | |||
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| ||
|short_description=p3@LY86-AS1 | |||
}} | }} |
Latest revision as of 13:11, 19 September 2015
Short description: | p3@LY86-AS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LY86-AS1_5end |
Coexpression cluster: | C782_B_Burkitt_lymphoma_splenic_acute_CD19_xeroderma |
Association with transcript: | -153bp_to_ENST00000447858_5end |
EntrezGene: | NA |
HGNC: | 26593 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 2.35e-119 | 24 |
pro-B cell | 2.35e-119 | 24 |
B cell | 1.55e-62 | 14 |
lymphocyte | 6.27e-59 | 53 |
common lymphoid progenitor | 6.27e-59 | 53 |
lymphoid lineage restricted progenitor cell | 1.04e-53 | 52 |
nongranular leukocyte | 2.10e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 1.62e-21 | 120 |
leukocyte | 4.59e-21 | 136 |
hematopoietic oligopotent progenitor cell | 2.34e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.34e-17 | 161 |
hematopoietic stem cell | 1.63e-16 | 168 |
hematopoietic cell | 1.58e-15 | 177 |
antibody secreting cell | 2.74e-10 | 1 |
plasma cell | 2.74e-10 | 1 |
plasmablast | 2.74e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
spleen | 4.84e-13 | 3 |
gastrointestinal system mesentery | 4.84e-13 | 3 |
stomach region | 4.84e-13 | 3 |
mesentery | 4.84e-13 | 3 |
gastrointestinal system serosa | 4.84e-13 | 3 |
mesentery of stomach | 4.84e-13 | 3 |
gut mesentery | 4.84e-13 | 3 |
dorsal mesentery | 4.84e-13 | 3 |
dorsal mesogastrium | 4.84e-13 | 3 |
peritoneal cavity | 4.84e-13 | 3 |
spleen primordium | 4.84e-13 | 3 |
tonsil | 4.75e-10 | 1 |
mucosa-associated lymphoid tissue | 4.75e-10 | 1 |
lymphoid tissue | 4.75e-10 | 1 |
tonsillar ring | 4.75e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 1.30e-10 | 1 |
genetic disease | 1.89e-10 | 1 |
monogenic disease | 1.89e-10 | 1 |
xeroderma pigmentosum | 1.89e-10 | 1 |
anemia | 3.29e-10 | 1 |
lymphoma | 7.23e-09 | 10 |