FFCP PHASE1:Hg19::chr19:5130791..5130800,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23030 | |EntrezGene=23030 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29136 | |HGNC=29136 | ||
|TSSclassifier=strong | |||
|UniProt=O94953 | |UniProt=O94953 | ||
|association_with_transcript=-428bp_to_AL133622_5end | |association_with_transcript=-428bp_to_AL133622_5end | ||
|cluster_id=chr19:5130791..5130800,+ | |||
|coexpression_cluster_id=C179 | |coexpression_cluster_id=C179 | ||
|description=CAGE_peak_3_at_KDM4B_5end | |description=CAGE_peak_3_at_KDM4B_5end | ||
|id=chr19:5130791..5130800,+ | |id=chr19:5130791..5130800,+ | ||
|ontology_enrichment_celltype=CL:0000838!1.56e-39!52;CL:0000542!1.12e-38!53;CL:0000051!1.12e-38!53;CL:0000791!6.80e-21!18;CL:0000789!6.80e-21!18;CL:0002420!6.80e-21!18;CL:0002419!6.80e-21!18;CL:0000790!6.80e-21!18;CL:0000738!1.85e-20!140;CL:0002087!6.76e-20!119;CL:0000945!7.26e-19!24;CL:0000826!7.26e-19!24;CL:0000236!1.03e-18!14;CL:0000084!1.81e-17!25;CL:0000827!1.81e-17!25;CL:0000624!2.08e-17!6;CL:0002031!9.93e-16!124;CL:0000037!2.54e-15!172;CL:0000566!2.54e-15!172;CL:0000988!4.34e-14!182;CL:0002032!1.66e-12!165;CL:0000837!1.66e-12!165;CL:0000815!7.79e-10!2;CL:0000792!7.79e-10!2;CL:0002677!7.79e-10!2;CL:0000625!6.06e-09!11;CL:0000898!8.26e-07!3 | |ontology_enrichment_celltype=CL:0000838!1.56e-39!52;CL:0000542!1.12e-38!53;CL:0000051!1.12e-38!53;CL:0000791!6.80e-21!18;CL:0000789!6.80e-21!18;CL:0002420!6.80e-21!18;CL:0002419!6.80e-21!18;CL:0000790!6.80e-21!18;CL:0000738!1.85e-20!140;CL:0002087!6.76e-20!119;CL:0000945!7.26e-19!24;CL:0000826!7.26e-19!24;CL:0000236!1.03e-18!14;CL:0000084!1.81e-17!25;CL:0000827!1.81e-17!25;CL:0000624!2.08e-17!6;CL:0002031!9.93e-16!124;CL:0000037!2.54e-15!172;CL:0000566!2.54e-15!172;CL:0000988!4.34e-14!182;CL:0002032!1.66e-12!165;CL:0000837!1.66e-12!165;CL:0000815!7.79e-10!2;CL:0000792!7.79e-10!2;CL:0002677!7.79e-10!2;CL:0000625!6.06e-09!11;CL:0000898!8.26e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000236;4.72e-39;13!CL:0000815;2.70e-22;2!CL:0000792;2.70e-22;2!CL:0002677;2.70e-22;2!CL:0000945;6.58e-21;24!CL:0000898;3.34e-15;3!CL:0000542;3.59e-12;53!CL:0000624;4.74e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,2.18e-36,14;CL:0000815,3.17e-22,2;CL:0000792,3.17e-22,2;CL:0002677,3.17e-22,2;CL:0000945,5.33e-21,24;CL:0000826,5.33e-21,24;CL:0000838,2.28e-15,52;CL:0000898,3.72e-15,3;CL:0000542,4.67e-15,53;CL:0000051,4.67e-15,53;CL:0000624,4.99e-08,6;CL:0002087,1.02e-07,115;CL:0000738,1.04e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000051;3.59e-12;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p3@KDM4B | |short_description=p3@KDM4B | ||
}} | }} |
Latest revision as of 12:58, 19 September 2015
Short description: | p3@KDM4B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_KDM4B_5end |
Coexpression cluster: | C179_CD19_Peripheral_lymphoma_blood_lymph_spleen_tonsil |
Association with transcript: | -428bp_to_AL133622_5end |
EntrezGene: | KDM4B |
HGNC: | 29136 |
UniProt: | O94953 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 2.18e-36 | 14 |
regulatory T cell | 3.17e-22 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.17e-22 | 2 |
naive regulatory T cell | 3.17e-22 | 2 |
lymphocyte of B lineage | 5.33e-21 | 24 |
pro-B cell | 5.33e-21 | 24 |
lymphoid lineage restricted progenitor cell | 2.28e-15 | 52 |
naive T cell | 3.72e-15 | 3 |
lymphocyte | 4.67e-15 | 53 |
common lymphoid progenitor | 4.67e-15 | 53 |
CD4-positive, alpha-beta T cell | 4.99e-08 | 6 |
nongranular leukocyte | 1.02e-07 | 115 |
leukocyte | 1.04e-07 | 136 |