FFCP PHASE1:Hg19::chrX:132549506..132549526,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2239 | |EntrezGene=2239 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4452 | |HGNC=4452 | ||
|TSSclassifier=strong | |||
|UniProt=O75487 | |UniProt=O75487 | ||
|association_with_transcript=0bp_to_ENST00000370828_5end | |association_with_transcript=0bp_to_ENST00000370828_5end | ||
|cluster_id=chrX:132549506..132549526,- | |||
|coexpression_cluster_id=C4850 | |||
|description=CAGE_peak_1_at_GPC4_5end | |description=CAGE_peak_1_at_GPC4_5end | ||
|id=chrX:132549506..132549526,- | |id=chrX:132549506..132549526,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.59e-15!659;UBERON:0007023!4.24e-14!115;UBERON:0005743!3.05e-13!86;UBERON:0001017!5.20e-13!82;UBERON:0000062!9.90e-13!511;UBERON:0004121!1.06e-12!169;UBERON:0000924!4.68e-12!173;UBERON:0006601!4.68e-12!173;UBERON:0000033!6.48e-12!123;UBERON:0000153!8.79e-12!129;UBERON:0007811!8.79e-12!129;UBERON:0000475!2.24e-11!365;UBERON:0000922!6.39e-11!612;UBERON:0000073!1.04e-10!94;UBERON:0001016!1.04e-10!94;UBERON:0000467!1.39e-10!625;UBERON:0001049!1.56e-10!57;UBERON:0005068!1.56e-10!57;UBERON:0006241!1.56e-10!57;UBERON:0007135!1.56e-10!57;UBERON:0000480!2.50e-10!626;UBERON:0003075!2.73e-10!86;UBERON:0007284!2.73e-10!86;UBERON:0002346!1.97e-09!90;UBERON:0002616!2.16e-09!59;UBERON:0000955!3.17e-09!69;UBERON:0006238!3.17e-09!69;UBERON:0000064!9.14e-09!219;UBERON:0002050!1.09e-08!605;UBERON:0005423!1.09e-08!605;UBERON:0000923!1.41e-08!604;UBERON:0005291!1.41e-08!604;UBERON:0006598!1.41e-08!604;UBERON:0002532!1.41e-08!604;UBERON:0003056!2.25e-07!61;UBERON:0003080!3.45e-07!42;UBERON:0002780!5.81e-07!41;UBERON:0001890!5.81e-07!41;UBERON:0006240!5.81e-07!41;UBERON:0002553!6.62e-07!70 | |ontology_enrichment_uberon=UBERON:0000468!1.59e-15!659;UBERON:0007023!4.24e-14!115;UBERON:0005743!3.05e-13!86;UBERON:0001017!5.20e-13!82;UBERON:0000062!9.90e-13!511;UBERON:0004121!1.06e-12!169;UBERON:0000924!4.68e-12!173;UBERON:0006601!4.68e-12!173;UBERON:0000033!6.48e-12!123;UBERON:0000153!8.79e-12!129;UBERON:0007811!8.79e-12!129;UBERON:0000475!2.24e-11!365;UBERON:0000922!6.39e-11!612;UBERON:0000073!1.04e-10!94;UBERON:0001016!1.04e-10!94;UBERON:0000467!1.39e-10!625;UBERON:0001049!1.56e-10!57;UBERON:0005068!1.56e-10!57;UBERON:0006241!1.56e-10!57;UBERON:0007135!1.56e-10!57;UBERON:0000480!2.50e-10!626;UBERON:0003075!2.73e-10!86;UBERON:0007284!2.73e-10!86;UBERON:0002346!1.97e-09!90;UBERON:0002616!2.16e-09!59;UBERON:0000955!3.17e-09!69;UBERON:0006238!3.17e-09!69;UBERON:0000064!9.14e-09!219;UBERON:0002050!1.09e-08!605;UBERON:0005423!1.09e-08!605;UBERON:0000923!1.41e-08!604;UBERON:0005291!1.41e-08!604;UBERON:0006598!1.41e-08!604;UBERON:0002532!1.41e-08!604;UBERON:0003056!2.25e-07!61;UBERON:0003080!3.45e-07!42;UBERON:0002780!5.81e-07!41;UBERON:0001890!5.81e-07!41;UBERON:0006240!5.81e-07!41;UBERON:0002553!6.62e-07!70 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.62e-14,114;UBERON:0001017,5.72e-13,81;UBERON:0004121,1.33e-12,171;UBERON:0000924,1.33e-12,171;UBERON:0006601,1.33e-12,171;UBERON:0003075,2.19e-11,82;UBERON:0007284,2.19e-11,82;UBERON:0001049,1.46e-10,56;UBERON:0005068,1.46e-10,56;UBERON:0006241,1.46e-10,56;UBERON:0007135,1.46e-10,56;UBERON:0002346,1.53e-10,86;UBERON:0001016,2.48e-10,89;UBERON:0000073,9.21e-10,53;UBERON:0002616,9.21e-10,53;UBERON:0010371,1.82e-09,104;UBERON:0000955,4.20e-09,68;UBERON:0006238,4.20e-09,68;UBERON:0011216,2.35e-08,223;UBERON:0000922,3.01e-08,592;UBERON:0010314,2.13e-07,132;UBERON:0003056,2.77e-07,61;UBERON:0002780,3.96e-07,41;UBERON:0001890,3.96e-07,41;UBERON:0003080,3.96e-07,41;UBERON:0006240,3.96e-07,41 | |||
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|phase1_expression=134.623679039482,107.264362469383,50.8845398786456,121.088691007288,50.9535647647108,42.7445876809181,48.126976851979,94.7579810140247,56.4160956911651,23.3447239676433,6.97801167972428,212.325013710527,188.857156411573,1.73272894144065,4.63956326019082,4.70627602516243,0,0,0,57.7437762380135,35.7001209677443,112.843699732112,162.009568716178,167.808045139356,289.752412184805,7.94699419778693,7.38905305049512,8.7368967258184,0,1.15148819429164,15.9460607015558,1.83884244895785,1.8072355126695,0.369754010166788,0,0,0,3.32397245119126,8.82395568868623,8.02940221648652,0,0.32389366601898,0.257575567634187,4.36194716338694,1.13362783106643,2.91100873425379,3.95129362739664,2.46700732813095,1.54853185447552,1.1507695692886,2.30544635876191,1.18241114944293,3.44745680736619,3.22742341791913,1.35426486594342,2.25890807451126,1.09162460023138,0.224723484445085,4.28517449319264,2.24650318953266,1.27867425159808,2.30895910130701,2.39356389145958,0.852449501065388,8.41606792022894,5.6738522469114,2.4912889959823,1.00499466102697,1.0429658368404,0.65156653411535,26.0321786132349,1.10483290796269,1.89877432464531,0,0.212604299965044,0.209658645508376,0.112328631146495,0.901061357049038,0.48217676009124,0,0,0,0,0.546138611262131,0,0.853460445133014,0,1.14950487990897,0.661044872784862,0,1.1384259382189,0,1.52909291250092,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0.144824403882799,2.43806866313962,0.670700859703636,8.56679164351653,0,8.02140657017423,3.76600949298142,23.858578411533,13.1391414981712,57.8553081044095,52.7715965960902,72.6393677682152,36.019245761871,1.82147644146271,0.741568885568859,2.27183175558278,2.96020553408754,12.2321323677356,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,1.00416183829401,1.20848795132744,0,5.6134273236079,0,0,0,0,0,0,0,1.09921046358244,0,0,2.18047026071267,6.95760732373446,5.82500353657067,0.926864265692532,15.7760141411848,7.80270440836386,10.6528744027038,8.5399196583764,7.64669400093196,5.29058760179603,0.808264032418128,0.817309515567294,26.0334775549282,8.06646294271999,0.937285727335186,13.7350433805341,2.2818872861778,12.7031378469031,4.93224894303812,1.94247533241758,1.26405726032024,2.44985005505872,5.65037859634133,13.8456546775526,3.56400857184616,6.67620709052104,2.73048408581408,0,8.24846958374924,8.88341491090946,1.38532057742091,4.82875382968922,3.98434134538726,10.9673783001816,8.6208459201616,11.660326319776,13.6676728843883,16.5306882904458,0.300091096084402,0.206105058476878,10.3056216018252,6.70020682793723,22.4472521880884,23.9695032696549,4.54380793639406,7.82424138459544,1.61646056818812,41.8911319169605,11.1834829032681,2.20428770003634,6.1843473012255,15.0010366324959,2.86804595389004,370.312171809452,616.661011999871,252.373243912594,150.308529772287,270.235631287798,488.704683802536,1.56449532329816,18.0107462694008,0,1.85747171212792,0.721879481669586,0,0,0,0,0,0,0,0,0,0,1.40241773803446,2.4694440679884,8.82052268313252,0,0,3.54473944008842,0,1.35287282397425,18.3577557019422,18.1087970924232,0,0.201057944823262,6.20342582562148,2.28065813717227,0,30.3095818253074,33.7357478477474,108.720450862371,7.21832238805369,1.85194205030644,0,10.2726571734706,6.00940313466411,14.7730203652438,187.437416376529,139.564661389116,7.49870671894216,59.9696197669929,22.6840155587818,2.05984602216551,1.74380363108377,3.4504441124869,0,0.088048434013226,0.414656231081544,0.144119953416961,0.12624243342638,0.444485260045183,1.14596527667483,0,23.9501424431787,0.411309970813294,0,0.571652865261156,8.40983132590205,15.6945624779981,5.5737097223922,3.49033632546,17.8828222925941,4.22651376278,19.1475443941107,9.36066932202295,3.34369586540785,2.83698264046557,2.1313774321288,1.28680194292333,4.88359444852299,1.64648067356154,1.62868092146868,0.710783897485092,0,1.80863626235752,3.48613383440118,1.49959486773086,41.3520854180048,10.5473989200747,63.2501818449095,1.91699884393266,3.44585807502342,92.7139882764669,9.98991016006297,19.5202506422864,18.9804621034289,0,0.197030760201927,0,0,22.1062323073543,27.3293693101006,23.1986643833309,24.6248910041493,22.9657950595139,0,0,0.414415513436035,7.60687248658667,3.50119364741774,2.98391526069709,0.415941723061614,0.713715955188647,0,0.117141414992713,32.5021787705936,50.0296508923167,23.7988063972761,6.64225598535437,4.97796755062599,0.260650843404249,5.87403472388222,10.2943027143257,0.620304078368662,0.431428401637234,0.426910231213777,11.5188477149579,198.058173017492,77.7143053857278,129.016060065764,326.567079156997,174.851238831805,56.8937822695312,333.633126391491,74.3145115683467,28.1994326245483,1.85051632563187,8.5229628150301,2.29956036838666,0,7.32125384297743,0.241718899183244,106.669442201348,1.65745780084613,0,0,0.262248829918848,45.1199612907412,51.5232605228535,36.0800893821353,17.5367069583913,37.6819315147566,1.13733384070897,0.340187410553031,10.3639639729027,15.4227252690289,11.3797503768418,28.0946273358718,31.3497815845397,24.1012042589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| ||
|short_description=p1@GPC4 | |short_description=p1@GPC4 | ||
}} | }} |
Latest revision as of 12:03, 19 September 2015
Short description: | p1@GPC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPC4_5end |
Coexpression cluster: | C4850_H9_HES3GFP_teratocarcinoma_testicular_Preadipocyte_anaplastic_iPS |
Association with transcript: | 0bp_to_ENST00000370828_5end |
EntrezGene: | GPC4 |
HGNC: | 4452 |
UniProt: | O75487 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.62e-14 | 114 |
central nervous system | 5.72e-13 | 81 |
ectoderm-derived structure | 1.33e-12 | 171 |
ectoderm | 1.33e-12 | 171 |
presumptive ectoderm | 1.33e-12 | 171 |
neural plate | 2.19e-11 | 82 |
presumptive neural plate | 2.19e-11 | 82 |
neural tube | 1.46e-10 | 56 |
neural rod | 1.46e-10 | 56 |
future spinal cord | 1.46e-10 | 56 |
neural keel | 1.46e-10 | 56 |
neurectoderm | 1.53e-10 | 86 |
nervous system | 2.48e-10 | 89 |
regional part of nervous system | 9.21e-10 | 53 |
regional part of brain | 9.21e-10 | 53 |
ecto-epithelium | 1.82e-09 | 104 |
brain | 4.20e-09 | 68 |
future brain | 4.20e-09 | 68 |
organ system subdivision | 2.35e-08 | 223 |
embryo | 3.01e-08 | 592 |
structure with developmental contribution from neural crest | 2.13e-07 | 132 |
pre-chordal neural plate | 2.77e-07 | 61 |
regional part of forebrain | 3.96e-07 | 41 |
forebrain | 3.96e-07 | 41 |
anterior neural tube | 3.96e-07 | 41 |
future forebrain | 3.96e-07 | 41 |