FFCP PHASE1:Hg19::chr1:8484007..8484061,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=473 | |EntrezGene=473 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9965 | |HGNC=9965 | ||
|TSSclassifier=strong | |||
|UniProt=Q9P2R6 | |UniProt=Q9P2R6 | ||
|association_with_transcript=-260bp_to_NM_001042682,uc001apd.2_5end | |association_with_transcript=-260bp_to_NM_001042682,uc001apd.2_5end | ||
|cluster_id=chr1:8484007..8484061,- | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_13_at_RERE_5end | |description=CAGE_peak_13_at_RERE_5end | ||
|id=chr1:8484007..8484061,- | |id=chr1:8484007..8484061,- | ||
|ontology_enrichment_celltype=CL:0000766!1.58e-31!76;CL:0000738!1.75e-31!140;CL:0000557!2.99e-28!71;CL:0002009!1.85e-26!65;CL:0002087!1.88e-26!119;CL:0002031!5.95e-26!124;CL:0002194!3.04e-25!63;CL:0000576!3.04e-25!63;CL:0000040!3.04e-25!63;CL:0000559!3.04e-25!63;CL:0002057!1.47e-24!42;CL:0000839!1.63e-24!70;CL:0000037!3.11e-23!172;CL:0000566!3.11e-23!172;CL:0002032!8.64e-22!165;CL:0000837!8.64e-22!165;CL:0000988!1.44e-21!182;CL:0000860!5.63e-21!45;CL:0000763!8.53e-19!112;CL:0000049!8.53e-19!112;CL:0000134!4.15e-07!358 | |ontology_enrichment_celltype=CL:0000766!1.58e-31!76;CL:0000738!1.75e-31!140;CL:0000557!2.99e-28!71;CL:0002009!1.85e-26!65;CL:0002087!1.88e-26!119;CL:0002031!5.95e-26!124;CL:0002194!3.04e-25!63;CL:0000576!3.04e-25!63;CL:0000040!3.04e-25!63;CL:0000559!3.04e-25!63;CL:0002057!1.47e-24!42;CL:0000839!1.63e-24!70;CL:0000037!3.11e-23!172;CL:0000566!3.11e-23!172;CL:0002032!8.64e-22!165;CL:0000837!8.64e-22!165;CL:0000988!1.44e-21!182;CL:0000860!5.63e-21!45;CL:0000763!8.53e-19!112;CL:0000049!8.53e-19!112;CL:0000134!4.15e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.14e-27;33!CL:0002057;9.14e-27;33!CL:0000473;8.94e-26;39!CL:0000234;8.94e-26;39!CL:0000576;8.01e-24;48!CL:0000766;8.40e-21;69!CL:0002087;2.89e-11;104!CL:0000738;4.48e-11;136!CL:0000763;1.90e-10;100!CL:0000094;1.56e-09;8!CL:0000840;1.58e-07;5!CL:0000988;2.53e-07;177!CL:0000791;7.78e-07;18!CL:0000789;7.78e-07;18!CL:0002419;7.78e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.24e-52,72;CL:0000738,5.18e-49,136;CL:0000557,3.06e-47,67;CL:0002009,9.39e-44,61;CL:0000839,3.79e-42,66;CL:0002194,9.32e-42,59;CL:0000576,9.32e-42,59;CL:0000040,9.32e-42,59;CL:0000559,9.32e-42,59;CL:0000473,2.49e-40,48;CL:0000234,2.49e-40,48;CL:0000037,5.26e-40,168;CL:0002031,1.21e-39,120;CL:0002087,1.54e-38,115;CL:0002032,1.56e-37,161;CL:0000837,1.56e-37,161;CL:0000860,3.75e-37,42;CL:0002057,3.75e-37,42;CL:0000763,4.25e-37,108;CL:0000049,4.25e-37,108;CL:0000988,3.93e-36,177;CL:0000094,1.26e-09,8;CL:0002393,2.82e-09,9;CL:0002397,2.82e-09,9;CL:0000134,2.59e-08,354;CL:0002320,1.28e-07,361;CL:0000840,1.47e-07,5;CL:0001029,1.47e-07,5 | |||
|ontology_enrichment_development_v019=CL:0002057;1.40e-26;42!CL:0000049;4.54e-10;108!CL:0000790;7.78e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.95e-33!112;UBERON:0002390!7.33e-33!102;UBERON:0003061!7.33e-33!102;UBERON:0002371!3.14e-25!80;UBERON:0001474!3.16e-22!86;UBERON:0002405!3.07e-21!115;UBERON:0007023!7.44e-20!115;UBERON:0004765!7.96e-19!101;UBERON:0001434!7.96e-19!101;UBERON:0003081!1.57e-16!216;UBERON:0002204!2.62e-11!167;UBERON:0000178!8.97e-08!15;UBERON:0000179!8.97e-08!15;UBERON:0000463!8.97e-08!15 | |ontology_enrichment_uberon=UBERON:0002193!2.95e-33!112;UBERON:0002390!7.33e-33!102;UBERON:0003061!7.33e-33!102;UBERON:0002371!3.14e-25!80;UBERON:0001474!3.16e-22!86;UBERON:0002405!3.07e-21!115;UBERON:0007023!7.44e-20!115;UBERON:0004765!7.96e-19!101;UBERON:0001434!7.96e-19!101;UBERON:0003081!1.57e-16!216;UBERON:0002204!2.62e-11!167;UBERON:0000178!8.97e-08!15;UBERON:0000179!8.97e-08!15;UBERON:0000463!8.97e-08!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.53e-10;15!UBERON:0000179;1.53e-10;15!UBERON:0000463;1.53e-10;15!UBERON:0002390;8.46e-08;32!UBERON:0002193;8.95e-07;42 | |||
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|phase1_expression=0.54503513781167,0,0.140954404095971,1.0007329835313,1.34088328328186,0.872338524100369,0,0,1.04474251279935,0.982935746006035,2.79120467188971,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0.369363174230364,0.204000691244253,0.313454721478088,0.286235987131057,0,0.125542639594803,1.91033514369878,1.14940825229924,2.36132343941038,1.57345710739562,3.0706351847777,4.95411594611443,1.83884244895785,0.6024118375565,0,0.232401601740905,0.426507697462265,0.293600439334847,5.53995408531877,7.2196001089251,8.68043482863407,5.82180233023803,3.2389366601898,4.89393578504954,8.43309784921475,3.77875943688809,5.82201746850759,3.95129362739664,2.46700732813095,3.40677007984614,12.0830804775303,15.6258030982751,6.14853797710322,2.06847408441971,3.22742341791913,4.06279459783025,3.01187743268168,1.09162460023138,0.898893937780338,4.59125838556354,2.56743221660875,3.19668562899521,25.0686988141904,17.5528018707036,18.7538890234385,4.06292934080018,1.70215567407342,2.4912889959823,16.0799145764316,13.5585558789252,6.95004303056373,4.84319602106695,2.94622108790052,1.89877432464531,2.74631872205524,1.91343869968539,2.30624510059213,8.19999007369414,5.25619124945272,8.83990726833941,3.70516566863623,3.18266683518544,2.55729815270488,0,1.09227722252426,0,1.28019066769952,0.400395987036012,0,1.98313461835459,0,1.70763890732835,2.34894875748376,0.382273228125229,1.32171328579026,0,0.263384084775077,3.540775862049,3.14408610199332,2.05601498999509,1.33749196312542,2.60737813306872,1.4203434172042,1.94826728407911,1.11410456885174,0.589211814949674,0.664601683750863,0.541607727530031,1.28091319725675,0.390178042679635,2.63100647365882,1.10540007114339,1.44901542867526,2.52087157375503,2.40786745280742,2.09071047609954,1.0197840842781,2.29932296161153,0.68725489096526,1.26509846009751,1.91139248594458,1.30216690771284,0.950452044448374,1.80690142893327,1.27986611154418,1.24930726552346,2.36777252044017,0.821127996921047,1.00803371612366,1.06976078313403,1.30341963494519,2.43806866313962,1.34140171940727,0.511450247374121,0.722878304769133,0.50133791063589,0.144846518960824,0,0,0,0.221729397462564,0.351339142772504,1.11332214173056,0,0,16.5519170763889,18.8060116283209,12.7639642098111,2.8618874916641,1.14398982156026,1.11437250398869,0.198762407366705,0.860234595106124,0.347140501607594,0,0.419499436209906,0,0.626984899610432,0.258416759169329,0,1.33888245105868,0,0,0.976248230192678,0.735326160691737,0,0.714397826272638,0,0.337834441449967,0,0,0.732806975721629,39.534125230819,62.0448422637321,0,0,0.25326102332916,0.132409180813219,0,0,0,1.06748995729705,0.98667019366864,0.622422070799533,0.269421344139376,0.163461903113459,0,0,0.70296429550139,0,0,0.448346041655403,0.469737994575059,0.161872944368132,0.140450806702248,0.204154171254893,0.122834317311768,0.309977343527296,0,0.247266929278557,2.73048408581408,0,0.336672227908132,0.500474079487857,1.10825646193673,0.877955241761676,0,0.150238058906597,0.453728732640084,0.358779271377724,0.640672166455702,0.423863802319124,0,0.412210116953756,0.257640540045629,0.558350568994769,0,0.389748020644795,0,0.276149695926898,0,0,0.10075209822764,0.339121184620975,0,0,0.573609190778008,0,0,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.4115740113314,0,0,0,0.590789906681404,0,0,0.171567810298526,0,1.1240175325762,0,0.0925884451585296,0,0,0,0.115930404975077,0.234817388471643,0.577465791044295,0.925971025153221,1.14152491340759,0,0,2.95460407304877,3.04205544681009,4.31030370637312,0,0,0.141775097242386,0,0.581267877027924,0,0,1.32072651019839,4.76854665743776,4.75595846275973,4.4184851699233,0.126995788584338,0.381988425558278,0,0,0.205654985406647,0,0.285826432630578,0.224262168690721,0,0.1466765716419,0.646358578788889,0,0,0,0,1.54324424557285,1.41849132023278,1.0656887160644,0.428933980974443,0.542621605391443,0,0.325736184293735,0,0,0.602878754119172,0.871533458600294,0.799783929456456,4.86495122564762,2.00902836572851,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0.112085143993527,0.591092280605782,1.2937654491571,1.79680250791648,0,0,0,0,0,40.4463792931478,50.8574480646842,44.3424599376558,0.24538298343828,0.500170521059677,0.271265023699736,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0.184369168541703,0.347534457872331,0,0,3.92859249633486,4.96142661882819,5.33637789017222,0,0,0.30239029332968,0.248107807818777,0.460385919864187,0.561320188866147,0.768834895534206,0,0.965123526861645,0,0,0.355123450626254,0.328508624055237,0,0.232420756919918,0,0.601519410909855,0.184161977871793,0.803701137152247,1.45672934405374,0.393373244878272,0.451199612907412,0.0770153371044148,0,0,0.105551628892876,0,1.19065593693561,0.647747748306418,0,0.270946437543853,0.501689773854853,0.254876273045038,1.66215201785745,0,0,0,0,0,0.325378394664303,1.64865618636356,0,0,0,0,1.6068392984416,0.096670718292122,0.154048617114644,0.15350367472613,0,0.214840489736547,0.145016693914229,0.17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| ||
|short_description=p13@RERE | |short_description=p13@RERE | ||
}} | }} |
Latest revision as of 11:49, 19 September 2015
Short description: | p13@RERE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_RERE_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -260bp_to_NM_001042682, uc001apd.2_5end |
EntrezGene: | RERE |
HGNC: | 9965 |
UniProt: | Q9P2R6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.24e-52 | 72 |
leukocyte | 5.18e-49 | 136 |
granulocyte monocyte progenitor cell | 3.06e-47 | 67 |
macrophage dendritic cell progenitor | 9.39e-44 | 61 |
myeloid lineage restricted progenitor cell | 3.79e-42 | 66 |
monopoietic cell | 9.32e-42 | 59 |
monocyte | 9.32e-42 | 59 |
monoblast | 9.32e-42 | 59 |
promonocyte | 9.32e-42 | 59 |
defensive cell | 2.49e-40 | 48 |
phagocyte | 2.49e-40 | 48 |
hematopoietic stem cell | 5.26e-40 | 168 |
hematopoietic lineage restricted progenitor cell | 1.21e-39 | 120 |
nongranular leukocyte | 1.54e-38 | 115 |
hematopoietic oligopotent progenitor cell | 1.56e-37 | 161 |
hematopoietic multipotent progenitor cell | 1.56e-37 | 161 |
classical monocyte | 3.75e-37 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.75e-37 | 42 |
myeloid cell | 4.25e-37 | 108 |
common myeloid progenitor | 4.25e-37 | 108 |
hematopoietic cell | 3.93e-36 | 177 |
granulocyte | 1.26e-09 | 8 |
intermediate monocyte | 2.82e-09 | 9 |
CD14-positive, CD16-positive monocyte | 2.82e-09 | 9 |
mesenchymal cell | 2.59e-08 | 354 |
connective tissue cell | 1.28e-07 | 361 |
immature conventional dendritic cell | 1.47e-07 | 5 |
common dendritic progenitor | 1.47e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.08e-53 | 98 |
blood island | 1.08e-53 | 98 |
hemolymphoid system | 5.15e-53 | 108 |
bone marrow | 6.10e-43 | 76 |
immune system | 8.78e-43 | 93 |
bone element | 5.30e-38 | 82 |
skeletal element | 1.76e-32 | 90 |
skeletal system | 1.01e-28 | 100 |
lateral plate mesoderm | 1.71e-22 | 203 |
musculoskeletal system | 1.83e-14 | 167 |
adult organism | 3.82e-14 | 114 |
mesoderm | 4.83e-11 | 315 |
mesoderm-derived structure | 4.83e-11 | 315 |
presumptive mesoderm | 4.83e-11 | 315 |
blood | 1.50e-10 | 15 |
haemolymphatic fluid | 1.50e-10 | 15 |
organism substance | 1.50e-10 | 15 |
connective tissue | 4.61e-07 | 371 |