FFCP PHASE1:Hg19::chr1:8483878..8483907,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=473 | |EntrezGene=473 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9965 | |HGNC=9965 | ||
|TSSclassifier=strong | |||
|UniProt=Q9P2R6 | |UniProt=Q9P2R6 | ||
|association_with_transcript=-131bp_to_NM_001042682,uc001apd.2_5end | |association_with_transcript=-131bp_to_NM_001042682,uc001apd.2_5end | ||
|cluster_id=chr1:8483878..8483907,- | |||
|description=CAGE_peak_4_at_RERE_5end | |description=CAGE_peak_4_at_RERE_5end | ||
|id=chr1:8483878..8483907,- | |id=chr1:8483878..8483907,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.12e-19!115;UBERON:0000468!7.96e-12!659;UBERON:0000467!2.22e-10!625;UBERON:0000480!2.60e-10!626;UBERON:0001009!1.59e-09!113;UBERON:0000926!9.14e-09!448;UBERON:0004120!9.14e-09!448;UBERON:0006603!9.14e-09!448;UBERON:0004535!2.09e-08!110;UBERON:0000479!2.70e-08!787;UBERON:0004111!3.76e-08!241;UBERON:0007100!7.64e-08!27;UBERON:0000119!2.48e-07!312;UBERON:0000477!3.19e-07!286;UBERON:0003103!4.55e-07!69;UBERON:0005256!5.93e-07!143;UBERON:0000483!6.01e-07!309;UBERON:0002050!7.47e-07!605;UBERON:0005423!7.47e-07!605;UBERON:0000922!8.07e-07!612 | |ontology_enrichment_uberon=UBERON:0007023!2.12e-19!115;UBERON:0000468!7.96e-12!659;UBERON:0000467!2.22e-10!625;UBERON:0000480!2.60e-10!626;UBERON:0001009!1.59e-09!113;UBERON:0000926!9.14e-09!448;UBERON:0004120!9.14e-09!448;UBERON:0006603!9.14e-09!448;UBERON:0004535!2.09e-08!110;UBERON:0000479!2.70e-08!787;UBERON:0004111!3.76e-08!241;UBERON:0007100!7.64e-08!27;UBERON:0000119!2.48e-07!312;UBERON:0000477!3.19e-07!286;UBERON:0003103!4.55e-07!69;UBERON:0005256!5.93e-07!143;UBERON:0000483!6.01e-07!309;UBERON:0002050!7.47e-07!605;UBERON:0005423!7.47e-07!605;UBERON:0000922!8.07e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0007100;1.85e-08;25!UBERON:0000948;9.31e-07;22 | |ontology_enrichment_uberon_v019=UBERON:0007100;1.85e-08;25!UBERON:0000948;9.31e-07;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.02e-20,114;UBERON:0000926,2.49e-14,315;UBERON:0004120,2.49e-14,315;UBERON:0006603,2.49e-14,315;UBERON:0000479,2.06e-10,773;UBERON:0003104,1.38e-09,160;UBERON:0009142,1.38e-09,160;UBERON:0001009,2.66e-09,112;UBERON:0004535,3.48e-08,109;UBERON:0005256,4.10e-08,122;UBERON:0007100,6.27e-08,27;UBERON:0004111,9.33e-08,240;UBERON:0000923,9.42e-08,560;UBERON:0010316,9.42e-08,560;UBERON:0005291,9.42e-08,560;UBERON:0006598,9.42e-08,560;UBERON:0010317,9.42e-08,560;UBERON:0002532,9.42e-08,560;UBERON:0002050,2.08e-07,564;UBERON:0005423,3.75e-07,581;UBERON:0000922,9.70e-07,592 | |||
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| ||
|short_description=p4@RERE | |short_description=p4@RERE | ||
}} | }} |
Latest revision as of 11:49, 19 September 2015
Short description: | p4@RERE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RERE_5end |
Coexpression cluster: | NA |
Association with transcript: | -131bp_to_NM_001042682, uc001apd.2_5end |
EntrezGene: | RERE |
HGNC: | 9965 |
UniProt: | Q9P2R6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 9.02e-20 | 114 |
mesoderm | 2.49e-14 | 315 |
mesoderm-derived structure | 2.49e-14 | 315 |
presumptive mesoderm | 2.49e-14 | 315 |
tissue | 2.06e-10 | 773 |
mesenchyme | 1.38e-09 | 160 |
entire embryonic mesenchyme | 1.38e-09 | 160 |
circulatory system | 2.66e-09 | 112 |
cardiovascular system | 3.48e-08 | 109 |
trunk mesenchyme | 4.10e-08 | 122 |
primary circulatory organ | 6.27e-08 | 27 |
anatomical conduit | 9.33e-08 | 240 |
germ layer | 9.42e-08 | 560 |
germ layer / neural crest | 9.42e-08 | 560 |
embryonic tissue | 9.42e-08 | 560 |
presumptive structure | 9.42e-08 | 560 |
germ layer / neural crest derived structure | 9.42e-08 | 560 |
epiblast (generic) | 9.42e-08 | 560 |
embryonic structure | 2.08e-07 | 564 |
developing anatomical structure | 3.75e-07 | 581 |
embryo | 9.70e-07 | 592 |