FFCP PHASE1:Hg19::chr12:56915582..56915627,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:56915582..56915627,+ to FFCP PHASE1:Hg19::chr12:56915582..56915627,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5939 | |EntrezGene=5939 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9909 | |HGNC=9909 | ||
|TSSclassifier=strong | |||
|UniProt=Q15434 | |UniProt=Q15434 | ||
|association_with_transcript=0bp_to_NM_002898,uc001sln.2,uc009zou.2,uc010sqp.1,uc010sqq.1_5end | |||
|cluster_id=chr12:56915582..56915627,+ | |||
|description=CAGE_peak_1_at_RBMS2_5end | |||
|id=chr12:56915582..56915627,+ | |||
|ontology_enrichment_celltype=CL:0000115!6.62e-10!35;CL:0002078!8.18e-09!44;CL:0002139!1.73e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000115;7.15e-09;36!CL:0002139;1.88e-07;24!CL:0002078;9.89e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.88e-10,36;CL:0002078,2.62e-09,45;CL:0002139,1.73e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000467!3.47e-22!625;UBERON:0000468!5.07e-22!659;UBERON:0000480!8.17e-22!626;UBERON:0007023!3.64e-17!115;UBERON:0004111!4.88e-17!241;UBERON:0002050!2.23e-15!605;UBERON:0005423!2.23e-15!605;UBERON:0000062!2.30e-15!511;UBERON:0000923!5.64e-15!604;UBERON:0005291!5.64e-15!604;UBERON:0006598!5.64e-15!604;UBERON:0002532!5.64e-15!604;UBERON:0000922!2.50e-14!612;UBERON:0000025!2.89e-14!194;UBERON:0000119!7.58e-14!312;UBERON:0000477!1.00e-13!286;UBERON:0000483!6.36e-13!309;UBERON:0000475!7.31e-11!365;UBERON:0000481!4.83e-10!347;UBERON:0000064!1.84e-09!219;UBERON:0002346!2.05e-09!90;UBERON:0003075!4.69e-09!86;UBERON:0007284!4.69e-09!86;UBERON:0001049!2.55e-08!57;UBERON:0005068!2.55e-08!57;UBERON:0006241!2.55e-08!57;UBERON:0007135!2.55e-08!57;UBERON:0002049!6.59e-08!79;UBERON:0007798!6.59e-08!79;UBERON:0002616!1.28e-07!59;UBERON:0000055!2.05e-07!69;UBERON:0000464!3.42e-07!104 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.79e-17,114;UBERON:0004111,1.77e-16,240;UBERON:0000025,5.15e-14,192;UBERON:0005423,1.80e-13,581;UBERON:0000119,2.97e-13,309;UBERON:0000922,7.62e-13,592;UBERON:0002050,2.33e-12,564;UBERON:0000483,2.38e-12,306;UBERON:0000923,9.09e-12,560;UBERON:0010316,9.09e-12,560;UBERON:0005291,9.09e-12,560;UBERON:0006598,9.09e-12,560;UBERON:0010317,9.09e-12,560;UBERON:0002532,9.09e-12,560;UBERON:0010314,8.79e-09,132;UBERON:0002346,1.33e-08,86;UBERON:0003075,3.01e-08,82;UBERON:0007284,3.01e-08,82;UBERON:0010371,6.86e-08,104;UBERON:0001049,7.28e-08,56;UBERON:0005068,7.28e-08,56;UBERON:0006241,7.28e-08,56;UBERON:0007135,7.28e-08,56;UBERON:0002049,8.07e-08,78;UBERON:0007798,8.07e-08,78;UBERON:0000055,2.50e-07,68;UBERON:0000073,2.61e-07,53;UBERON:0002616,2.61e-07,53;UBERON:0003103,7.90e-07,68 | |||
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| ||
|short_description=p1@RBMS2 | |||
}} | }} |
Latest revision as of 11:19, 19 September 2015
Short description: | p1@RBMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RBMS2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_002898, uc001sln.2, uc009zou.2, uc010sqp.1, uc010sqq.1_5end |
EntrezGene: | RBMS2 |
HGNC: | 9909 |
UniProt: | Q15434 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.88e-10 | 36 |
meso-epithelial cell | 2.62e-09 | 45 |
endothelial cell of vascular tree | 1.73e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.79e-17 | 114 |
anatomical conduit | 1.77e-16 | 240 |
tube | 5.15e-14 | 192 |
developing anatomical structure | 1.80e-13 | 581 |
cell layer | 2.97e-13 | 309 |
embryo | 7.62e-13 | 592 |
embryonic structure | 2.33e-12 | 564 |
epithelium | 2.38e-12 | 306 |
germ layer | 9.09e-12 | 560 |
germ layer / neural crest | 9.09e-12 | 560 |
embryonic tissue | 9.09e-12 | 560 |
presumptive structure | 9.09e-12 | 560 |
germ layer / neural crest derived structure | 9.09e-12 | 560 |
epiblast (generic) | 9.09e-12 | 560 |
structure with developmental contribution from neural crest | 8.79e-09 | 132 |
neurectoderm | 1.33e-08 | 86 |
neural plate | 3.01e-08 | 82 |
presumptive neural plate | 3.01e-08 | 82 |
ecto-epithelium | 6.86e-08 | 104 |
neural tube | 7.28e-08 | 56 |
neural rod | 7.28e-08 | 56 |
future spinal cord | 7.28e-08 | 56 |
neural keel | 7.28e-08 | 56 |
vasculature | 8.07e-08 | 78 |
vascular system | 8.07e-08 | 78 |
vessel | 2.50e-07 | 68 |
regional part of nervous system | 2.61e-07 | 53 |
regional part of brain | 2.61e-07 | 53 |
compound organ | 7.90e-07 | 68 |