FFCP PHASE1:Hg19::chr6:57087042..57087128,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:57087042..57087128,-
|short_description=p1@RAB23
|description=CAGE_peak_1_at_RAB23_5end
|association_with_transcript=0bp_to_ENST00000317483,ENST00000344445...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51715 | |EntrezGene=51715 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14263 | |HGNC=14263 | ||
|TSSclassifier=strong | |||
|UniProt=Q9ULC3 | |UniProt=Q9ULC3 | ||
|association_with_transcript=0bp_to_ENST00000317483,ENST00000344445,NM_016277,uc003pdt.2,uc010kac.2,uc010kad.2_5end | |||
|cluster_id=chr6:57087042..57087128,- | |||
|description=CAGE_peak_1_at_RAB23_5end | |||
|id=chr6:57087042..57087128,- | |||
|ontology_enrichment_celltype=CL:0000055!3.94e-24!180;CL:0000057!8.96e-16!75;CL:0002620!6.83e-09!23;CL:0000680!1.68e-07!57;CL:0000056!1.68e-07!57;CL:0000355!1.68e-07!57;CL:0000393!6.16e-07!60;CL:0000211!6.16e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0002620;5.74e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.26e-16,76;CL:0002620,6.59e-09,23;CL:0000680,6.47e-08,58;CL:0000056,6.47e-08,58;CL:0000355,6.47e-08,58;CL:0000393,2.49e-07,61;CL:0000211,2.49e-07,61;CL:0000187,5.35e-07,55 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!2.58e-16!365;UBERON:0000481!3.90e-14!347;UBERON:0000914!6.24e-12!83;UBERON:0002329!6.24e-12!83;UBERON:0003077!6.24e-12!83;UBERON:0003059!6.24e-12!83;UBERON:0007282!6.24e-12!83;UBERON:0009618!6.24e-12!83;UBERON:0007285!6.24e-12!83;UBERON:0003102!1.25e-10!95;UBERON:0000468!2.08e-10!659;UBERON:0005256!5.38e-09!143;UBERON:0004290!1.07e-08!70;UBERON:0000486!4.99e-08!82;UBERON:0005156!6.34e-08!59;UBERON:0000990!6.34e-08!59;UBERON:0000119!8.51e-08!312;UBERON:0002385!9.63e-08!63;UBERON:0001015!9.63e-08!63;UBERON:0000383!9.63e-08!63;UBERON:0000483!1.20e-07!309;UBERON:0002100!2.33e-07!216;UBERON:0002199!3.12e-07!45;UBERON:0002416!3.12e-07!45;UBERON:0001134!3.31e-07!61;UBERON:0002036!3.31e-07!61;UBERON:0003082!3.31e-07!61 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,4.64e-11,132;UBERON:0003102,9.92e-11,99;UBERON:0007524,1.02e-09,73;UBERON:0003104,2.29e-09,160;UBERON:0009142,2.29e-09,160;UBERON:0003077,2.70e-09,72;UBERON:0007285,2.70e-09,72;UBERON:0002329,4.07e-09,71;UBERON:0003059,4.07e-09,71;UBERON:0007282,4.07e-09,71;UBERON:0004290,4.07e-09,71;UBERON:0009618,4.07e-09,71;UBERON:0000486,2.21e-08,83;UBERON:0002385,3.76e-08,64;UBERON:0001015,3.76e-08,64;UBERON:0000383,3.76e-08,64;UBERON:0000119,3.83e-08,309;UBERON:0005256,4.31e-08,122;UBERON:0000483,5.44e-08,306;UBERON:0005156,6.14e-08,59;UBERON:0000990,6.14e-08,59;UBERON:0002199,1.32e-07,46;UBERON:0002416,1.32e-07,46;UBERON:0001134,1.32e-07,62;UBERON:0002036,1.32e-07,62;UBERON:0003082,1.32e-07,62;UBERON:0007503,3.47e-07,78;UBERON:0011216,4.71e-07,223;UBERON:0004121,8.44e-07,171;UBERON:0000924,8.44e-07,171;UBERON:0006601,8.44e-07,171 | |||
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| ||
|short_description=p1@RAB23 | |||
}} | }} |
Latest revision as of 10:44, 19 September 2015
Short description: | p1@RAB23 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAB23_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000317483, ENST00000344445, NM_016277, uc003pdt.2, uc010kac.2, uc010kad.2_5end |
EntrezGene: | RAB23 |
HGNC: | 14263 |
UniProt: | Q9ULC3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.26e-16 | 76 |
skin fibroblast | 6.59e-09 | 23 |
muscle precursor cell | 6.47e-08 | 58 |
myoblast | 6.47e-08 | 58 |
multi-potent skeletal muscle stem cell | 6.47e-08 | 58 |
electrically responsive cell | 2.49e-07 | 61 |
electrically active cell | 2.49e-07 | 61 |
muscle cell | 5.35e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 4.64e-11 | 132 |
surface structure | 9.92e-11 | 99 |
dense mesenchyme tissue | 1.02e-09 | 73 |
mesenchyme | 2.29e-09 | 160 |
entire embryonic mesenchyme | 2.29e-09 | 160 |
paraxial mesoderm | 2.70e-09 | 72 |
presumptive paraxial mesoderm | 2.70e-09 | 72 |
somite | 4.07e-09 | 71 |
presomitic mesoderm | 4.07e-09 | 71 |
presumptive segmental plate | 4.07e-09 | 71 |
dermomyotome | 4.07e-09 | 71 |
trunk paraxial mesoderm | 4.07e-09 | 71 |
multilaminar epithelium | 2.21e-08 | 83 |
muscle tissue | 3.76e-08 | 64 |
musculature | 3.76e-08 | 64 |
musculature of body | 3.76e-08 | 64 |
cell layer | 3.83e-08 | 309 |
trunk mesenchyme | 4.31e-08 | 122 |
epithelium | 5.44e-08 | 306 |
reproductive structure | 6.14e-08 | 59 |
reproductive system | 6.14e-08 | 59 |
integument | 1.32e-07 | 46 |
integumental system | 1.32e-07 | 46 |
skeletal muscle tissue | 1.32e-07 | 62 |
striated muscle tissue | 1.32e-07 | 62 |
myotome | 1.32e-07 | 62 |
epithelial vesicle | 3.47e-07 | 78 |
organ system subdivision | 4.71e-07 | 223 |
ectoderm-derived structure | 8.44e-07 | 171 |
ectoderm | 8.44e-07 | 171 |
presumptive ectoderm | 8.44e-07 | 171 |