FFCP PHASE1:Hg19::chr5:98109322..98109350,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=285704 | |EntrezGene=285704 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26896 | |HGNC=26896 | ||
|TSSclassifier=strong | |||
|UniProt=Q6NW40 | |UniProt=Q6NW40 | ||
|association_with_transcript=0bp_to_ENST00000513185_5end | |association_with_transcript=0bp_to_ENST00000513185_5end | ||
|cluster_id=chr5:98109322..98109350,+ | |||
|description=CAGE_peak_4_at_RGMB_5end | |description=CAGE_peak_4_at_RGMB_5end | ||
|id=chr5:98109322..98109350,+ | |id=chr5:98109322..98109350,+ | ||
|ontology_enrichment_celltype=CL:0000066!1.03e-08!254;CL:0000223!4.21e-08!59;CL:0002076!5.58e-07!43 | |ontology_enrichment_celltype=CL:0000066!1.03e-08!254;CL:0000223!4.21e-08!59;CL:0002076!5.58e-07!43 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,1.00e-07,58;CL:0000066,2.91e-07,253;CL:0002076,8.17e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.92e-15!115;UBERON:0000064!5.97e-14!219;UBERON:0000481!1.03e-12!347;UBERON:0000475!2.11e-12!365;UBERON:0004111!5.61e-12!241;UBERON:0004119!1.50e-10!169;UBERON:0000925!1.50e-10!169;UBERON:0006595!1.50e-10!169;UBERON:0000477!2.37e-10!286;UBERON:0004121!2.45e-10!169;UBERON:0000924!9.10e-10!173;UBERON:0006601!9.10e-10!173;UBERON:0001007!3.56e-09!155;UBERON:0001555!3.56e-09!155;UBERON:0007026!3.56e-09!155;UBERON:0000464!3.76e-09!104;UBERON:0000466!1.01e-08!126;UBERON:0000033!4.54e-08!123;UBERON:0000483!4.95e-08!309;UBERON:0004921!6.05e-08!129;UBERON:0004185!6.05e-08!129;UBERON:0000468!1.68e-07!659;UBERON:0000119!1.68e-07!312;UBERON:0001950!2.54e-07!20;UBERON:0000025!2.55e-07!194;UBERON:0002619!3.05e-07!22;UBERON:0001049!3.15e-07!57;UBERON:0005068!3.15e-07!57;UBERON:0006241!3.15e-07!57;UBERON:0007135!3.15e-07!57;UBERON:0000153!4.11e-07!129;UBERON:0007811!4.11e-07!129;UBERON:0000480!7.24e-07!626;UBERON:0001017!7.34e-07!82;UBERON:0001869!9.01e-07!32;UBERON:0005743!9.21e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.32e-07;20!UBERON:0002619;1.84e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.52e-15,114;UBERON:0011216,8.16e-11,223;UBERON:0004111,3.82e-10,240;UBERON:0004119,8.98e-09,160;UBERON:0000925,8.98e-09,160;UBERON:0006595,8.98e-09,160;UBERON:0004121,2.33e-08,171;UBERON:0000924,2.33e-08,171;UBERON:0006601,2.33e-08,171;UBERON:0001007,1.17e-07,145;UBERON:0001555,1.17e-07,145;UBERON:0007026,1.17e-07,145;UBERON:0001950,1.45e-07,20;UBERON:0002619,1.75e-07,22;UBERON:0000073,7.05e-07,53;UBERON:0002616,7.05e-07,53;UBERON:0001049,9.14e-07,56;UBERON:0005068,9.14e-07,56;UBERON:0006241,9.14e-07,56;UBERON:0007135,9.14e-07,56 | |||
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| ||
|short_description=p4@RGMB | |short_description=p4@RGMB | ||
}} | }} |
Latest revision as of 10:37, 19 September 2015
Short description: | p4@RGMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RGMB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000513185_5end |
EntrezGene: | RGMB |
HGNC: | 26896 |
UniProt: | Q6NW40 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 1.00e-07 | 58 |
epithelial cell | 2.91e-07 | 253 |
endo-epithelial cell | 8.17e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.52e-15 | 114 |
organ system subdivision | 8.16e-11 | 223 |
anatomical conduit | 3.82e-10 | 240 |
endoderm-derived structure | 8.98e-09 | 160 |
endoderm | 8.98e-09 | 160 |
presumptive endoderm | 8.98e-09 | 160 |
ectoderm-derived structure | 2.33e-08 | 171 |
ectoderm | 2.33e-08 | 171 |
presumptive ectoderm | 2.33e-08 | 171 |
digestive system | 1.17e-07 | 145 |
digestive tract | 1.17e-07 | 145 |
primitive gut | 1.17e-07 | 145 |
neocortex | 1.45e-07 | 20 |
regional part of cerebral cortex | 1.75e-07 | 22 |
regional part of nervous system | 7.05e-07 | 53 |
regional part of brain | 7.05e-07 | 53 |
neural tube | 9.14e-07 | 56 |
neural rod | 9.14e-07 | 56 |
future spinal cord | 9.14e-07 | 56 |
neural keel | 9.14e-07 | 56 |