FFCP PHASE1:Hg19::chr2:200325452..200325462,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23314 | |EntrezGene=23314 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=21637 | |HGNC=21637 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-197bp_to_uc002uuz.1_5end | |association_with_transcript=-197bp_to_uc002uuz.1_5end | ||
|cluster_id=chr2:200325452..200325462,- | |||
|coexpression_cluster_id=C150 | |||
|description=CAGE_peak_33_at_SATB2_5end | |description=CAGE_peak_33_at_SATB2_5end | ||
|id=chr2:200325452..200325462,- | |id=chr2:200325452..200325462,- | ||
|ontology_enrichment_celltype=CL:0000242!3.00e-12!2 | |ontology_enrichment_celltype=CL:0000242!3.00e-12!2 | ||
|ontology_enrichment_celltype_v019=CL:0000123;1.04e-66;2!CL:0000242;1.04e-66;2!CL:0000312;1.82e-27;5!CL:0000240;4.34e-23;6!CL:0000311;4.34e-23;6!CL:0000079;4.34e-23;6!CL:0000237;4.34e-23;6!CL:0000362;9.04e-16;9!CL:0002159;1.64e-10;14!CL:0000095;5.35e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.04e-66,2;CL:0000312,1.82e-27,5;CL:0000240,4.34e-23,6;CL:0000311,4.34e-23,6;CL:0000079,4.34e-23,6;CL:0000237,4.34e-23,6;CL:0000036,4.34e-23,6;CL:0000357,4.34e-23,6;CL:0000114,4.34e-23,6;CL:0000362,9.04e-16,9;CL:0002159,1.64e-10,14;CL:0000095,5.35e-08,17;CL:0000123,5.35e-08,17 | |||
|ontology_enrichment_development_v019=UBERON:0005425;7.06e-34;1!CL:0000357;4.34e-23;6!CL:0000114;4.34e-23;6!UBERON:0003056;2.89e-12;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001950!3.47e-08!20;UBERON:0002619!2.01e-07!22;UBERON:0000941!6.96e-07!1;UBERON:0004904!6.96e-07!1;UBERON:0002464!6.96e-07!1;UBERON:0001021!6.96e-07!1;UBERON:0001785!6.96e-07!1;UBERON:0001154!7.77e-07!1;UBERON:0001153!7.77e-07!1 | |ontology_enrichment_uberon=UBERON:0001950!3.47e-08!20;UBERON:0002619!2.01e-07!22;UBERON:0000941!6.96e-07!1;UBERON:0004904!6.96e-07!1;UBERON:0002464!6.96e-07!1;UBERON:0001021!6.96e-07!1;UBERON:0001785!6.96e-07!1;UBERON:0001154!7.77e-07!1;UBERON:0001153!7.77e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;7.06e-34;1!UBERON:0001785;7.06e-34;1!UBERON:0002464;7.06e-34;1!UBERON:0004904;7.06e-34;1!UBERON:0001021;7.06e-34;1!UBERON:0003714;1.07e-17;2!UBERON:0005162;1.07e-17;2!UBERON:0000122;1.07e-17;2!UBERON:0001155;1.13e-15;9!UBERON:0000059;5.10e-13;11!UBERON:0001003;7.09e-10;15!UBERON:0007376;7.09e-10;15!UBERON:0000160;2.42e-08;17!UBERON:0005409;9.95e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,7.06e-34,1;UBERON:0001785,7.06e-34,1;UBERON:0002464,7.06e-34,1;UBERON:0004904,7.06e-34,1;UBERON:0001021,7.06e-34,1;UBERON:0003902,7.06e-34,1;UBERON:0005425,7.06e-34,1;UBERON:0003714,1.07e-17,2;UBERON:0005162,1.07e-17,2;UBERON:0000122,1.07e-17,2;UBERON:0001155,1.05e-15,9;UBERON:0000059,4.80e-13,11;UBERON:0001003,7.09e-10,15;UBERON:0007376,7.09e-10,15;UBERON:0007383,7.09e-10,15;UBERON:0001781,1.57e-09,4;UBERON:0000160,2.33e-08,17;UBERON:0000966,8.97e-07,6;UBERON:0005388,8.97e-07,6;UBERON:0001802,8.97e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.457847324091717,0.577566499444116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828851746593443,0,0,0,0,0,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0,0,6.96683351754953,1.68069372556344,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,1.20116498503375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.492137407573744,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.8217500077647,2.75349954360568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.504143392443436,0,0,1.42769420259154,0,0,0,0,0,0,0.397832444232549,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0.118193840883968,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365753774946808,0,0,0,0,0,0,0.118920090777569,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.457847324091717,0.577566499444116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828851746593443,0,0,0,0,0,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0,0,6.96683351754953,1.68069372556344,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,1.20116498503375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.492137407573744,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.8217500077647,2.75349954360568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.504143392443436,0,0,1.42769420259154,0,0,0,0,0,0,0.397832444232549,0,0,0,0,0,0,0,0,0,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0.118193840883968,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365753774946808,0,0,0,0,0,0,0.118920090777569,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p33@SATB2 | |short_description=p33@SATB2 | ||
}} | }} |
Latest revision as of 09:29, 19 September 2015
Short description: | p33@SATB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_33_at_SATB2_5end |
Coexpression cluster: | C150_merkel_carcinoid_nonsmall_gastrointestinal_argyrophil_pineal_small |
Association with transcript: | -197bp_to_uc002uuz.1_5end |
EntrezGene: | SATB2 |
HGNC: | 21637 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.04e-66 | 2 |
keratinocyte | 1.82e-27 | 5 |
stratified squamous epithelial cell | 4.34e-23 | 6 |
keratin accumulating cell | 4.34e-23 | 6 |
stratified epithelial cell | 4.34e-23 | 6 |
keratinizing barrier epithelial cell | 4.34e-23 | 6 |
epithelial fate stem cell | 4.34e-23 | 6 |
stratified epithelial stem cell | 4.34e-23 | 6 |
surface ectodermal cell | 4.34e-23 | 6 |
epidermal cell | 9.04e-16 | 9 |
general ecto-epithelial cell | 1.64e-10 | 14 |
neuron associated cell | 5.35e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.35e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 7.06e-34 | 1 |
cranial nerve | 7.06e-34 | 1 |
nerve trunk | 7.06e-34 | 1 |
nerve connecting eye with brain | 7.06e-34 | 1 |
nerve | 7.06e-34 | 1 |
retinal neural layer | 7.06e-34 | 1 |
presumptive neural retina | 7.06e-34 | 1 |
neural tissue | 1.07e-17 | 2 |
multi cell component structure | 1.07e-17 | 2 |
neuron projection bundle | 1.07e-17 | 2 |
colon | 1.05e-15 | 9 |
large intestine | 4.80e-13 | 11 |
skin epidermis | 7.09e-10 | 15 |
outer epithelium | 7.09e-10 | 15 |
enveloping layer of ectoderm | 7.09e-10 | 15 |
layer of retina | 1.57e-09 | 4 |
intestine | 2.33e-08 | 17 |
retina | 8.97e-07 | 6 |
photoreceptor array | 8.97e-07 | 6 |
posterior segment of eyeball | 8.97e-07 | 6 |