FFCP PHASE1:Hg19::chr1:18957333..18957375,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5081 | |EntrezGene=5081 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8621 | |HGNC=8621 | ||
|TSSclassifier=strong | |||
|UniProt=P23759,E9PFV9,Q2PJS5 | |UniProt=P23759,E9PFV9,Q2PJS5 | ||
|association_with_transcript=-124bp_to_ENST00000375375,NM_001135254,NM_002584,NM_013945,uc001bay.2,uc001baz.2,uc010oct.1_5end | |association_with_transcript=-124bp_to_ENST00000375375,NM_001135254,NM_002584,NM_013945,uc001bay.2,uc001baz.2,uc010oct.1_5end | ||
|cluster_id=chr1:18957333..18957375,+ | |||
|coexpression_cluster_id=C90 | |||
|description=CAGE_peak_1_at_PAX7_5end | |description=CAGE_peak_1_at_PAX7_5end | ||
|id=chr1:18957333..18957375,+ | |id=chr1:18957333..18957375,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.14e-19!5;CL:0000188!8.69e-11!9 | |ontology_enrichment_celltype=CL:0002322!1.14e-19!5;CL:0000188!8.69e-11!9 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0004874;1.39e-11;1 | |||
|ontology_enrichment_disease=DOID:171!8.69e-11!10;DOID:3095!2.02e-08!22;DOID:2994!2.02e-08!22 | |ontology_enrichment_disease=DOID:171!8.69e-11!10;DOID:3095!2.02e-08!22;DOID:2994!2.02e-08!22 | ||
|ontology_enrichment_disease_v019=DOID:171;7.11e-27;10!DOID:3095;3.44e-12;22!DOID:2994;3.44e-12;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,7.50e-27,10;DOID:3095,3.52e-12,22;DOID:2994,3.52e-12,22 | |||
|ontology_enrichment_uberon=UBERON:0000341!6.17e-09!2;UBERON:0002148!9.20e-09!2;UBERON:0009662!9.20e-09!2;UBERON:0003076!1.21e-08!15;UBERON:0003057!1.21e-08!15 | |ontology_enrichment_uberon=UBERON:0000341!6.17e-09!2;UBERON:0002148!9.20e-09!2;UBERON:0009662!9.20e-09!2;UBERON:0003076!1.21e-08!15;UBERON:0003057!1.21e-08!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;2.68e-43;4!UBERON:0000923;2.68e-43;4!UBERON:0010316;2.68e-43;4!UBERON:0005291;2.68e-43;4!UBERON:0002050;1.00e-34;5!UBERON:0005423;1.00e-34;5!UBERON:0001134;2.32e-16;16!UBERON:0002036;2.32e-16;16!UBERON:0001723;9.97e-15;3!UBERON:0001033;9.97e-15;3!UBERON:0002426;9.11e-12;1!UBERON:0003831;9.11e-12;1!UBERON:0003898;9.11e-12;1!UBERON:0004830;9.11e-12;1!UBERON:0003830;9.11e-12;1!UBERON:0005175;9.11e-12;1!UBERON:0001774;9.11e-12;1!UBERON:0001103;9.11e-12;1!UBERON:0000989;1.39e-11;1!UBERON:0008811;1.39e-11;1!UBERON:0002385;2.15e-08;31!UBERON:0001015;2.15e-08;31!UBERON:0000383;2.15e-08;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,1.07e-14,3;UBERON:0001033,1.07e-14,3;UBERON:0010056,1.07e-14,3;UBERON:0002426,8.64e-12,1;UBERON:0003831,8.64e-12,1;UBERON:0003898,8.64e-12,1;UBERON:0004830,8.64e-12,1;UBERON:0003830,8.64e-12,1;UBERON:0005175,8.64e-12,1;UBERON:0001774,8.64e-12,1;UBERON:0001103,8.64e-12,1;UBERON:0010084,8.64e-12,1;UBERON:0000989,1.19e-11,1;UBERON:0008811,1.19e-11,1;UBERON:0006258,1.19e-11,1;UBERON:0005876,1.19e-11,1;UBERON:0004874,1.19e-11,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0.348581828608555,0.621966330092223,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,4.64019447802185,0,0.15350367472613,0.137836572484531,0,0,0.0852266274161009,6.41030656656509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2076507472158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40773294189637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.6521831152186,44.6407332213534,14.0047413612672,13.9661229493311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48863353516788,4.04503862027127,0,0,0.336283722218824,0,0.91064876540519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.25889780289286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84793052341245,11.598144313382,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,4.89091842798872,0,0,0,0,0,0,0,0.109265571963696,0,0,0.26721740526556,0,0,0,0,0,0,1.0661699095049,0.23806443146374,0,0,0,0,0.404234377916439,1.30630048738177,2.05339980651169,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0.348581828608555,0.621966330092223,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0,0,4.64019447802185,0,0.15350367472613,0.137836572484531,0,0,0.0852266274161009,6.41030656656509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.2076507472158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40773294189637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.6521831152186,44.6407332213534,14.0047413612672,13.9661229493311,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48863353516788,4.04503862027127,0,0,0.336283722218824,0,0.91064876540519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.25889780289286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84793052341245,11.598144313382,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0,0,0,0,0,0,0,0,0,4.89091842798872,0,0,0,0,0,0,0,0.109265571963696,0,0,0.26721740526556,0,0,0,0,0,0,1.0661699095049,0.23806443146374,0,0,0,0,0.404234377916439,1.30630048738177,2.05339980651169,0,0,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p1@PAX7 | |short_description=p1@PAX7 | ||
}} | }} |
Latest revision as of 09:08, 19 September 2015
Short description: | p1@PAX7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PAX7_5end |
Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
Association with transcript: | -124bp_to_ENST00000375375, NM_001135254, NM_002584, NM_013945, uc001bay.2, uc001baz.2, uc010oct.1_5end |
EntrezGene: | PAX7 |
HGNC: | 8621 |
UniProt: | P23759E9PFV9Q2PJS5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
tongue | 1.07e-14 | 3 |
gustatory system | 1.07e-14 | 3 |
future tongue | 1.07e-14 | 3 |
chest muscle | 8.64e-12 | 1 |
respiratory system muscle | 8.64e-12 | 1 |
skeletal muscle of trunk | 8.64e-12 | 1 |
respiratory system skeletal muscle | 8.64e-12 | 1 |
thoracic segment muscle | 8.64e-12 | 1 |
chest organ | 8.64e-12 | 1 |
muscle of trunk | 8.64e-12 | 1 |
diaphragm | 8.64e-12 | 1 |
future diaphragm | 8.64e-12 | 1 |
penis | 1.19e-11 | 1 |
intromittent organ | 1.19e-11 | 1 |
lateral plate mesenchyme | 1.19e-11 | 1 |
undifferentiated genital tubercle | 1.19e-11 | 1 |
somatopleure | 1.19e-11 | 1 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 7.50e-27 | 10 |
germ cell and embryonal cancer | 3.52e-12 | 22 |
germ cell cancer | 3.52e-12 | 22 |