FFCP PHASE1:Hg19::chr4:90816021..90816032,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:90816021..90816032,+
|short_description=p3@MMRN1
|description=CAGE_peak_3_at_MMRN1_5end
|association_with_transcript=18bp_to_uc010iku.2_5end
|EntrezGene=2...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=22915 | |EntrezGene=22915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7178 | |HGNC=7178 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=18bp_to_uc010iku.2_5end | |||
|cluster_id=chr4:90816021..90816032,+ | |||
|coexpression_cluster_id=C328 | |||
|description=CAGE_peak_3_at_MMRN1_5end | |||
|id=chr4:90816021..90816032,+ | |||
|ontology_enrichment_celltype=CL:0002139!5.80e-30!24;CL:0000115!4.11e-25!35;CL:0000071!1.13e-22!18;CL:0002546!1.13e-22!18;CL:0002078!1.19e-17!44;CL:1000413!6.00e-12!9;CL:0000213!2.96e-11!57;CL:0000215!2.96e-11!57;CL:0002543!7.86e-09!6;CL:0005020!7.96e-09!6;CL:0002138!7.96e-09!6;CL:0005022!7.96e-09!6;CL:0002544!1.88e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.25e-49;24!CL:0000071;4.59e-37;18!CL:0000115;2.19e-27;36!CL:1000413;5.38e-19;9!CL:0002078;8.25e-17;45!CL:0002543;9.26e-14;6!CL:0002138;9.36e-14;6!CL:0002544;4.12e-13;6!CL:0000213;1.03e-11;58!CL:0000215;1.03e-11;58!CL:0002618;7.38e-08;3!CL:0002144;1.45e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.59e-49,24;CL:0000071,5.06e-37,18;CL:0002546,5.06e-37,18;CL:0000115,8.40e-33,36;CL:0002078,1.40e-24,45;CL:1000413,5.68e-19,9;CL:0000213,2.79e-17,58;CL:0000215,2.79e-17,58;CL:0002543,9.54e-14,6;CL:0005020,9.74e-14,6;CL:0002138,9.74e-14,6;CL:0005022,9.74e-14,6;CL:0002544,4.11e-13,6;CL:0002618,7.41e-08,3;CL:0002144,1.47e-07,3;CL:0000076,8.80e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;4.59e-37;18!CL:0005022;9.36e-14;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.49e-52!115;UBERON:0001986!1.13e-22!18;UBERON:0004638!1.13e-22!18;UBERON:0004852!1.13e-22!18;UBERON:0000487!3.22e-17!22;UBERON:0006914!2.62e-14!25;UBERON:0004111!4.03e-13!241;UBERON:0001009!5.32e-12!113;UBERON:0003915!6.00e-12!9;UBERON:0004700!6.00e-12!9;UBERON:0001917!6.00e-12!9;UBERON:0004535!1.94e-11!110;UBERON:0000025!4.67e-11!194;UBERON:0000477!6.94e-11!286;UBERON:0001049!1.05e-10!57;UBERON:0005068!1.05e-10!57;UBERON:0006241!1.05e-10!57;UBERON:0007135!1.05e-10!57;UBERON:0000055!3.17e-09!69;UBERON:0003080!1.02e-08!42;UBERON:0002780!4.32e-08!41;UBERON:0001890!4.32e-08!41;UBERON:0006240!4.32e-08!41;UBERON:0002616!9.14e-08!59;UBERON:0002465!9.38e-08!10;UBERON:0003075!1.73e-07!86;UBERON:0007284!1.73e-07!86;UBERON:0004872!2.49e-07!84;UBERON:0001638!4.69e-07!9;UBERON:0003920!4.69e-07!9;UBERON:0004582!4.69e-07!9;UBERON:0002049!6.92e-07!79;UBERON:0007798!6.92e-07!79;UBERON:0002346!9.77e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;4.59e-37;18!UBERON:0001986;4.59e-37;18!UBERON:0004852;4.59e-37;18!UBERON:0000487;3.05e-29;22!UBERON:0006914;4.97e-25;25!UBERON:0003915;5.38e-19;9!UBERON:0004700;5.38e-19;9!UBERON:0001917;5.38e-19;9!UBERON:0000490;3.17e-16;33!UBERON:0001638;2.09e-11;9!UBERON:0003920;2.09e-11;9!UBERON:0004582;2.09e-11;9!UBERON:0002465;2.73e-10;10!UBERON:0001473;4.76e-10;8!UBERON:0004536;4.76e-10;8!UBERON:0006558;4.76e-10;8!UBERON:0000055;1.26e-09;65!UBERON:0010523;1.45e-07;3!UBERON:0001915;1.45e-07;3!UBERON:0001982;1.45e-07;3!UBERON:0002193;3.16e-07;42!UBERON:0000178;5.25e-07;15!UBERON:0000179;5.25e-07;15!UBERON:0000463;5.25e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,5.06e-37,18;UBERON:0001986,5.06e-37,18;UBERON:0004852,5.06e-37,18;UBERON:0000487,3.29e-29,22;UBERON:0006914,5.32e-25,25;UBERON:0003915,5.68e-19,9;UBERON:0004700,5.68e-19,9;UBERON:0001917,5.68e-19,9;UBERON:0004535,5.49e-16,109;UBERON:0000055,6.47e-16,68;UBERON:0007023,1.45e-15,114;UBERON:0001009,2.84e-15,112;UBERON:0002049,7.53e-13,78;UBERON:0007798,7.53e-13,78;UBERON:0001638,2.03e-11,9;UBERON:0003920,2.03e-11,9;UBERON:0004582,2.03e-11,9;UBERON:0007500,1.84e-10,59;UBERON:0001981,1.84e-10,59;UBERON:0004537,1.84e-10,59;UBERON:0006965,1.84e-10,59;UBERON:0002465,2.63e-10,10;UBERON:0001473,4.90e-10,8;UBERON:0004536,4.90e-10,8;UBERON:0006558,4.90e-10,8;UBERON:0004872,3.62e-08,83;UBERON:0010523,1.47e-07,3;UBERON:0001915,1.47e-07,3;UBERON:0001982,1.47e-07,3;UBERON:0000178,4.95e-07,15;UBERON:0000179,4.95e-07,15;UBERON:0000463,4.95e-07,15;UBERON:0003914,7.52e-07,117 | |||
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| ||
|short_description=p3@MMRN1 | |||
}} | }} |
Latest revision as of 08:56, 19 September 2015
Short description: | p3@MMRN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MMRN1_5end |
Coexpression cluster: | C328_Endothelial_Lymphatic_Renal_Hepatic_chronic_extraskeletal_adipose |
Association with transcript: | 18bp_to_uc010iku.2_5end |
EntrezGene: | MMRN1 |
HGNC: | 7178 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.59e-49 | 24 |
blood vessel endothelial cell | 5.06e-37 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.06e-37 | 18 |
endothelial cell | 8.40e-33 | 36 |
meso-epithelial cell | 1.40e-24 | 45 |
endothelial cell of artery | 5.68e-19 | 9 |
lining cell | 2.79e-17 | 58 |
barrier cell | 2.79e-17 | 58 |
vein endothelial cell | 9.54e-14 | 6 |
lymphangioblast | 9.74e-14 | 6 |
endothelial cell of lymphatic vessel | 9.74e-14 | 6 |
vascular lymphangioblast | 9.74e-14 | 6 |
aortic endothelial cell | 4.11e-13 | 6 |
endothelial cell of umbilical vein | 7.41e-08 | 3 |
capillary endothelial cell | 1.47e-07 | 3 |
squamous epithelial cell | 8.80e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 5.06e-37 | 18 |
endothelium | 5.06e-37 | 18 |
cardiovascular system endothelium | 5.06e-37 | 18 |
simple squamous epithelium | 3.29e-29 | 22 |
squamous epithelium | 5.32e-25 | 25 |
endothelial tube | 5.68e-19 | 9 |
arterial system endothelium | 5.68e-19 | 9 |
endothelium of artery | 5.68e-19 | 9 |
cardiovascular system | 5.49e-16 | 109 |
vessel | 6.47e-16 | 68 |
adult organism | 1.45e-15 | 114 |
circulatory system | 2.84e-15 | 112 |
vasculature | 7.53e-13 | 78 |
vascular system | 7.53e-13 | 78 |
vein | 2.03e-11 | 9 |
venous blood vessel | 2.03e-11 | 9 |
venous system | 2.03e-11 | 9 |
epithelial tube open at both ends | 1.84e-10 | 59 |
blood vessel | 1.84e-10 | 59 |
blood vasculature | 1.84e-10 | 59 |
vascular cord | 1.84e-10 | 59 |
lymphoid system | 2.63e-10 | 10 |
lymphatic vessel | 4.90e-10 | 8 |
lymph vasculature | 4.90e-10 | 8 |
lymphatic part of lymphoid system | 4.90e-10 | 8 |
splanchnic layer of lateral plate mesoderm | 3.62e-08 | 83 |
microcirculatory vessel | 1.47e-07 | 3 |
endothelium of capillary | 1.47e-07 | 3 |
capillary | 1.47e-07 | 3 |
blood | 4.95e-07 | 15 |
haemolymphatic fluid | 4.95e-07 | 15 |
organism substance | 4.95e-07 | 15 |
epithelial tube | 7.52e-07 | 117 |